BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G41640.1

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947508 jgi|Araly1|947508|scaffold_703737.1                        180    1e-44


> Ahg947508 jgi|Araly1|947508|scaffold_703737.1
Length=776

 Score =  180 bits (97),  Expect = 1e-44
 Identities = 166/196 (85%), Gaps = 17/196 (9%)
 Strand=Plus/Plus

Query  47   AGGGGTTCGATACTACAGAAGCGAG-TGATGGTCCTGAACTTCAAAAATCCATCTGTGAT  105
            |||| |||||||| || || ||||| | ||||||||||||||||||||||||||||||||
Sbjct  146  AGGGATTCGATACCACTGACGCGAGAT-ATGGTCCTGAACTTCAAAAATCCATCTGTGAT  204

Query  106  AAAAGGTGGTCACCTTGTTGTACCTTAGTCCGCCTTTATGCTAGGATGGGTCTTCATCGT  165
             ||||||||||||| ||||||||||||||   |||||||||||||||||| |||||||||
Sbjct  205  GAAAGGTGGTCACCATGTTGTACCTTAGTTATCCTTTATGCTAGGATGGGCCTTCATCGT  264

Query  166  TACAATTTG-TT--G---AAGC-TT-A--G-TCG-T-G--TAAAGAAATACAATATGAGT  210
            ||||||||| ||  |   |||  || |  | ||  | |  ||||||||||||||||||||
Sbjct  265  TACAATTTGCTTCAGGGTAAGAATTTACAGCTCAATCGCGTAAAGAAATACAATATGAGT  324

Query  211  ACGCATTATGCTGCTT  226
            ||||||| ||||||||
Sbjct  325  ACGCATTCTGCTGCTT  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21748685730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5