BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41640.1 Length=594 Score E Sequences producing significant alignments: (Bits) Value Ahg947508 jgi|Araly1|947508|scaffold_703737.1 180 1e-44 > Ahg947508 jgi|Araly1|947508|scaffold_703737.1 Length=776 Score = 180 bits (97), Expect = 1e-44 Identities = 166/196 (85%), Gaps = 17/196 (9%) Strand=Plus/Plus Query 47 AGGGGTTCGATACTACAGAAGCGAG-TGATGGTCCTGAACTTCAAAAATCCATCTGTGAT 105 |||| |||||||| || || ||||| | |||||||||||||||||||||||||||||||| Sbjct 146 AGGGATTCGATACCACTGACGCGAGAT-ATGGTCCTGAACTTCAAAAATCCATCTGTGAT 204 Query 106 AAAAGGTGGTCACCTTGTTGTACCTTAGTCCGCCTTTATGCTAGGATGGGTCTTCATCGT 165 ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| Sbjct 205 GAAAGGTGGTCACCATGTTGTACCTTAGTTATCCTTTATGCTAGGATGGGCCTTCATCGT 264 Query 166 TACAATTTG-TT--G---AAGC-TT-A--G-TCG-T-G--TAAAGAAATACAATATGAGT 210 ||||||||| || | ||| || | | || | | |||||||||||||||||||| Sbjct 265 TACAATTTGCTTCAGGGTAAGAATTTACAGCTCAATCGCGTAAAGAAATACAATATGAGT 324 Query 211 ACGCATTATGCTGCTT 226 ||||||| |||||||| Sbjct 325 ACGCATTCTGCTGCTT 340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21748685730 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5