BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41650.1
Length=629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493824 jgi|Araly1|493824|fgenesh2_kg.7__3257__AT5G41650.1 878 0.0
Ahg315015 jgi|Araly1|315015|fgenesh1_pm.C_scaffold_2000048 313 1e-84
> Ahg493824 jgi|Araly1|493824|fgenesh2_kg.7__3257__AT5G41650.1
Length=632
Score = 878 bits (475), Expect = 0.0
Identities = 584/634 (92%), Gaps = 18/634 (3%)
Strand=Plus/Plus
Query 10 TATTTTACACTCGTTCGTCTTCGTCTAGAGAGAGATGGCGACGGCGTCGTTTAGGTGGAT 69
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TATTTCACACTCGTTCGTCTTCGTCTAGAGAGAGATGGCAACGGCGTCGTTTAGGTGGAT 60
Query 70 TCTGCAGCTTCACAGAGACGTACCAAAAGCTGCTCGATTCTATGCTCAAGGTCTCGACTT 129
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TCTGCAGCTTCACAGAGACGTACCAAAAGCTGCTCGATTCTATGCGCAAGGTCTCGACTT 120
Query 130 TTCCGTCAATGTCGTCACTTTACGCTGGGCTGAGCTCCATTCTGGTCCTATCAAGCTAGC 189
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CTCCGTCAATGTCGTCACTTTACGCTGGGCTGAGCTCCATTCTGGTCCTCTCAAGCTAGC 180
Query 190 TCTTATGCAATCTCCTAGCAATCATGTTGCTGAGAAGGGATACTCATCGCTTCTATCGTT 249
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTATGCAATCTCCTAGCGATCATGTTGCTGAGAAGGGATACTCATCGCTTCTATCGTT 240
Query 250 --CAC---AGTC-ACTGACATTAATACAACAGTGACTAAACTTATGGCTTTAGGAGCTGA 303
||| || | | |||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 241 CACACAAGAGGCTGCAGACATTAATACAACAGTGACCAAACTTATGGCTTTGGGAGCAGA 300
Query 304 ATTAGATGGCACTATCAAGTATGAGATACATGGAAAGGTTGCGGCTATGAAATGCCCTGA 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ATTAGATGGCACTATCAAGTATGAGATACATGGAAAGGTTGCGGCTATGAGATGCCCTGA 360
Query 364 TGGTTACATGTTAGGCCTTTATGAGGCTGCATGAGCA-A---AT-G-AATAGAATTGAAG 417
||||||||||||||| |||||||||||||||| |||| | || | |||||||||||||
Sbjct 361 TGGTTACATGTTAGGGCTTTATGAGGCTGCATAAGCATATGGATAGAAATAGAATTGAAG 420
Query 418 CCTGAAAGGAAGCCAATTATGCATAGAGTA-GATTTG-TTT-AGAGATCATATCCATAAT 474
|||||||| || |||||| |||||||| || | |||| ||| ||| ||||||| |||||
Sbjct 421 CCTGAAAGAAAACCAATTCTGCATAGAATAGGTTTTGTTTTAAGAAATCATATTCATAAG 480
Query 475 CTCTTTGAAGCTATTGTATACTTCTTAGAAACCTAAGCCACTATTATACTTT-ATATTGG 533
|||||||||||| |||| ||||||| ||||||| |||||||||||| ||||| | |||||
Sbjct 481 CTCTTTGAAGCTTTTGTTTACTTCTAAGAAACCAAAGCCACTATTAGACTTTGAAATTGG 540
Query 534 TTCATGTTTAACTTGCTCTTCACATTGTTTCTCTAGTAAGCTTTTCTCAAGTCAAttttt 593
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCATGTTCAAGTTGCTCTTCACATTGTTTCTCTAGTAAGCTTTTCTCAAGTCAATTTTG 600
Query 594 ttCCATTCATTATATATAATATCCTGAAAGTGAC 627
| || |||||||||||||||||||||||||||||
Sbjct 601 T-CC-TTCATTATATATAATATCCTGAAAGTGAC 632
> Ahg315015 jgi|Araly1|315015|fgenesh1_pm.C_scaffold_2000048
Length=357
Score = 313 bits (169), Expect = 1e-84
Identities = 279/331 (84%), Gaps = 11/331 (3%)
Strand=Plus/Plus
Query 44 ATGGCGACGGCGTCGTTTAGGTGGATTC-TGCAGCTTCACAGAGACGTACCAAAAGCTGC 102
||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||
Sbjct 1 ATGGCGACGGCGTCGTTTAGGTGGA-TCTTGCAGCTACACAGAGACGTACCAAAAGCGGC 59
Query 103 TCGATTCTATGCTCAAGGTCTCGACTTT-TCCGTCAATGTCGTCACTTTACGCTGGGCTG 161
||||||||| | |||||||||| ||| ||||||||||| ||||| ||||| |||||||
Sbjct 60 TCGATTCTACGAGAAAGGTCTCGA-TTTCTCCGTCAATGTGGTCACCTTACGTTGGGCTG 118
Query 162 AGCTCCATTCTGGTCCTATCAAGCTAGCTCTTATGCAATCTCCTAGCAATCATGTTGC-- 219
| || || ||||||||| ||||||||||||||||||||||||||||| | ||| | ||
Sbjct 119 AACTTCACTCTGGTCCTCTCAAGCTAGCTCTTATGCAATCTCCTAGCGAGCATAT-GCCG 177
Query 220 --TGAGAAGGGATACTCATCGCTTCTATCGTTCACAGTCACTGACATTAATACAACAGTG 277
||||||||||||||| || || ||||||||||| || || ||||| ||||||||| |
Sbjct 178 AGTGAGAAGGGATACTCTTCACTACTATCGTTCACTGTGACGGACATCAATACAACAATC 237
Query 278 ACTAAACTTATGGCTTTAGGAGCTGAA-TTAGATGGCACTATCAAGTATGAGATACATGG 336
|||||||||||| |||||||| ||| || |||||| ||||||| || ||| | |||||
Sbjct 238 TCTAAACTTATGGAATTAGGAGCAGAACTT-GATGGCTCTATCAAATACGAGGTCCATGG 296
Query 337 AAAGGTTGCGGCTATGAAATGCCCTGATGGT 367
|||||||| || ||| ||| | |||||||
Sbjct 297 CAAGGTTGCATCTGTGAGATGTCTTGATGGT 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23026241868
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5