BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41650.1 Length=629 Score E Sequences producing significant alignments: (Bits) Value Ahg493824 jgi|Araly1|493824|fgenesh2_kg.7__3257__AT5G41650.1 878 0.0 Ahg315015 jgi|Araly1|315015|fgenesh1_pm.C_scaffold_2000048 313 1e-84 > Ahg493824 jgi|Araly1|493824|fgenesh2_kg.7__3257__AT5G41650.1 Length=632 Score = 878 bits (475), Expect = 0.0 Identities = 584/634 (92%), Gaps = 18/634 (3%) Strand=Plus/Plus Query 10 TATTTTACACTCGTTCGTCTTCGTCTAGAGAGAGATGGCGACGGCGTCGTTTAGGTGGAT 69 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 TATTTCACACTCGTTCGTCTTCGTCTAGAGAGAGATGGCAACGGCGTCGTTTAGGTGGAT 60 Query 70 TCTGCAGCTTCACAGAGACGTACCAAAAGCTGCTCGATTCTATGCTCAAGGTCTCGACTT 129 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 TCTGCAGCTTCACAGAGACGTACCAAAAGCTGCTCGATTCTATGCGCAAGGTCTCGACTT 120 Query 130 TTCCGTCAATGTCGTCACTTTACGCTGGGCTGAGCTCCATTCTGGTCCTATCAAGCTAGC 189 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 121 CTCCGTCAATGTCGTCACTTTACGCTGGGCTGAGCTCCATTCTGGTCCTCTCAAGCTAGC 180 Query 190 TCTTATGCAATCTCCTAGCAATCATGTTGCTGAGAAGGGATACTCATCGCTTCTATCGTT 249 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTTATGCAATCTCCTAGCGATCATGTTGCTGAGAAGGGATACTCATCGCTTCTATCGTT 240 Query 250 --CAC---AGTC-ACTGACATTAATACAACAGTGACTAAACTTATGGCTTTAGGAGCTGA 303 ||| || | | |||||||||||||||||||| |||||||||||||| ||||| || Sbjct 241 CACACAAGAGGCTGCAGACATTAATACAACAGTGACCAAACTTATGGCTTTGGGAGCAGA 300 Query 304 ATTAGATGGCACTATCAAGTATGAGATACATGGAAAGGTTGCGGCTATGAAATGCCCTGA 363 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 301 ATTAGATGGCACTATCAAGTATGAGATACATGGAAAGGTTGCGGCTATGAGATGCCCTGA 360 Query 364 TGGTTACATGTTAGGCCTTTATGAGGCTGCATGAGCA-A---AT-G-AATAGAATTGAAG 417 ||||||||||||||| |||||||||||||||| |||| | || | ||||||||||||| Sbjct 361 TGGTTACATGTTAGGGCTTTATGAGGCTGCATAAGCATATGGATAGAAATAGAATTGAAG 420 Query 418 CCTGAAAGGAAGCCAATTATGCATAGAGTA-GATTTG-TTT-AGAGATCATATCCATAAT 474 |||||||| || |||||| |||||||| || | |||| ||| ||| ||||||| ||||| Sbjct 421 CCTGAAAGAAAACCAATTCTGCATAGAATAGGTTTTGTTTTAAGAAATCATATTCATAAG 480 Query 475 CTCTTTGAAGCTATTGTATACTTCTTAGAAACCTAAGCCACTATTATACTTT-ATATTGG 533 |||||||||||| |||| ||||||| ||||||| |||||||||||| ||||| | ||||| Sbjct 481 CTCTTTGAAGCTTTTGTTTACTTCTAAGAAACCAAAGCCACTATTAGACTTTGAAATTGG 540 Query 534 TTCATGTTTAACTTGCTCTTCACATTGTTTCTCTAGTAAGCTTTTCTCAAGTCAAttttt 593 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTCATGTTCAAGTTGCTCTTCACATTGTTTCTCTAGTAAGCTTTTCTCAAGTCAATTTTG 600 Query 594 ttCCATTCATTATATATAATATCCTGAAAGTGAC 627 | || ||||||||||||||||||||||||||||| Sbjct 601 T-CC-TTCATTATATATAATATCCTGAAAGTGAC 632 > Ahg315015 jgi|Araly1|315015|fgenesh1_pm.C_scaffold_2000048 Length=357 Score = 313 bits (169), Expect = 1e-84 Identities = 279/331 (84%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 44 ATGGCGACGGCGTCGTTTAGGTGGATTC-TGCAGCTTCACAGAGACGTACCAAAAGCTGC 102 ||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| || Sbjct 1 ATGGCGACGGCGTCGTTTAGGTGGA-TCTTGCAGCTACACAGAGACGTACCAAAAGCGGC 59 Query 103 TCGATTCTATGCTCAAGGTCTCGACTTT-TCCGTCAATGTCGTCACTTTACGCTGGGCTG 161 ||||||||| | |||||||||| ||| ||||||||||| ||||| ||||| ||||||| Sbjct 60 TCGATTCTACGAGAAAGGTCTCGA-TTTCTCCGTCAATGTGGTCACCTTACGTTGGGCTG 118 Query 162 AGCTCCATTCTGGTCCTATCAAGCTAGCTCTTATGCAATCTCCTAGCAATCATGTTGC-- 219 | || || ||||||||| ||||||||||||||||||||||||||||| | ||| | || Sbjct 119 AACTTCACTCTGGTCCTCTCAAGCTAGCTCTTATGCAATCTCCTAGCGAGCATAT-GCCG 177 Query 220 --TGAGAAGGGATACTCATCGCTTCTATCGTTCACAGTCACTGACATTAATACAACAGTG 277 ||||||||||||||| || || ||||||||||| || || ||||| ||||||||| | Sbjct 178 AGTGAGAAGGGATACTCTTCACTACTATCGTTCACTGTGACGGACATCAATACAACAATC 237 Query 278 ACTAAACTTATGGCTTTAGGAGCTGAA-TTAGATGGCACTATCAAGTATGAGATACATGG 336 |||||||||||| |||||||| ||| || |||||| ||||||| || ||| | ||||| Sbjct 238 TCTAAACTTATGGAATTAGGAGCAGAACTT-GATGGCTCTATCAAATACGAGGTCCATGG 296 Query 337 AAAGGTTGCGGCTATGAAATGCCCTGATGGT 367 |||||||| || ||| ||| | ||||||| Sbjct 297 CAAGGTTGCATCTGTGAGATGTCTTGATGGT 327 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23026241868 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5