BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G41660.1

Length=1551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947235 jgi|Araly1|947235|scaffold_703464.1                        230    3e-59


> Ahg947235 jgi|Araly1|947235|scaffold_703464.1
Length=498

 Score =  230 bits (124),  Expect = 3e-59
 Identities = 339/437 (78%), Gaps = 38/437 (9%)
 Strand=Plus/Plus

Query  1130  AACTTTTG-AATCATCCTCTTTTATAGAGAGAACTTTTGATTGGTCTCTGACCTTAAGTT  1188
             ||| |||| || |||||||||  |||||||||||| ||| | |  ||| |||| |   ||
Sbjct  79    AACCTTTGCAACCATCCTCTTCAATAGAGAGAACTATTGCTAGACCTCCGACC-T--CTT  135

Query  1189  TGC--A-AAACCAT-TTGGATACCTTAACCACCTTTGTAGAAGCCTCGTG-TTTCGAGCC  1243
             |||  | ||||||| |||| | || ||| |  |||| |||||||  ||||  || ||| |
Sbjct  136   TGCGGAGAAACCATGTTGGTTTCC-TAATCTTCTTTTTAGAAGCGACGTGCATT-GAGTC  193

Query  1244  GGTGAT-ATCCAAGGTTAAAGACTTTTTCTCAACGTCACTATG-TCTTGTTTGG-ACCGT  1300
             | | || | ||||||| || || ||||| |||||||||||| |  ||| | ||| |  ||
Sbjct  194   GAT-ATCACCCAAGGTCAAGGAATTTTTATCAACGTCACTA-GCCCTT-TATGGAAATGT  250

Query  1301  GACCATTCAACAATCTCCCGAAGTATTCGTGGAATTGTCTTCGACTCACCATTCTCTCGC  1360
             |||||||||||||| ||||||| |  ||||||||||||||||||||||||||||| ||| 
Sbjct  251   GACCATTCAACAATGTCCCGAAATCCTCGTGGAATTGTCTTCGACTCACCATTCTATCGT  310

Query  1361  TTGTGGCAAGTTACTATCTTGTTCTTGTCTCCGATGTATGGATCTA-CGGTCGATTTA-T  1418
             |||||||||| |||||| ||||||||||||||||||| |||| ||  || |||| ||| |
Sbjct  311   TTGTGGCAAGCTACTATATTGTTCTTGTCTCCGATGTTTGGACCTTTCG-TCGAATTACT  369

Query  1419  CCTATCCT-T-TTCCTTTTCCATTCTCTTGTGAGAGAGCTAGTA-TTGTTATTT--GATG  1473
             | |||| | | ||  | | ||| || ||| | | |||| || || ||| |||||  | ||
Sbjct  370   C-TATC-TATGTTA-TCTACCAATCGCTTTT-A-AGAG-TATTAGTTGCTATTTTTGTTG  423

Query  1474  TTTCCAACAATGAGGTTGATGTTTG-TGTAA-ACTTTGTACTACCTATGGGTTGAGTTTG  1531
             | |||||| |||||||||||||||  | ||| | ||||||||  |||||| |||| |  |
Sbjct  424   TATCCAACGATGAGGTTGATGTTTACT-TAACA-TTTGTACTTGCTATGGCTTGAAT--G  479

Query  1532  AATGAAAGTATGCTTTG  1548
             ||||||| |||| ||||
Sbjct  480   AATGAAA-TATGTTTTG  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 58087623625


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5