BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41670.1
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493822 jgi|Araly1|493822|fgenesh2_kg.7__3255__AT5G41670.1 2748 0.0
Ahg924525 jgi|Araly1|924525|scaffold_200086.1 1762 0.0
> Ahg493822 jgi|Araly1|493822|fgenesh2_kg.7__3255__AT5G41670.1
Length=1735
Score = 2748 bits (1488), Expect = 0.0
Identities = 1622/1687 (96%), Gaps = 8/1687 (0%)
Strand=Plus/Plus
Query 1 ACCACCAACCTCCGTCAAAACCCTAAAC-CACTAtctctctctctctct-TC-ATATCGC 57
||||||||||||||||||||| |||| | | || ||||||||||||||| || || || |
Sbjct 1 ACCACCAACCTCCGTCAAAACGCTAACCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTC 60
Query 58 AACAATGGAGTCCGTCGCTCTATCTCGCATAGGTCTCGCCGGTCTCGCAGTCATGGGACA 117
|| ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 61 AAAAATGGAGTCCGCCGCTCTATCTCGCATCGGTCTCGCCGGTCTTGCAGTCATGGGACA 120
Query 118 AAACCTCGCCTTAAACATCGCCGATAAAGGATTCCCAATCTCCGTCTACAATCGAACCAC 177
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 AAACCTCGCTTTAAACATCGCCGAGAAAGGATTCCCAATCTCCGTCTACAATCGAACCAC 180
Query 178 TTCCAAAGTCGACGAAACCTTAGATCGTGCCTCCAACGAAGGAAAACTCCCAGTCGCTGG 237
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 181 TTCCAAAGTCGACGAAACCCTAGATCGTGCCTCCGACGAAGGAAAACTCCCAGTCGCTGG 240
Query 238 TCAATACTCGCCTCGCGATTTCGTTCTCTCGATCCAACGGCCTAGATCCGTTATCATCCT 297
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TCAATACTCTCCTCGCGATTTCGTTCTCTCCATCCAACGGCCTAGATCCGTTATCATCCT 300
Query 298 TGTCAAAGCCGGTGCTCCCGTTGACCAAACCATCTCTGCTCTCTCTGAATACATGGAGCC 357
|||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 301 TGTCAAAGCCGGTGCTCCCGTTGACCAAACAATCTCCGCACTCTCCGAATACATGGAGCC 360
Query 358 TGGTGATTGTATCATCGACGGTGGAAATGAGTGGTATCAGAACACAGAGCGACGAATCGT 417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TGGTGATTGTATCATCGACGGTGGAAATGAGTGGTATCAGAACACAGAACGACGAATCGT 420
Query 418 TGAAGCTGAGAAGAAAGGATTGCTTTATTTAGGTATGGGAGTCTCCGGTGGTGAAGAAGG 477
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 TGAAGCTGAGAAGAAAGGATTGCTTTATTTAGGTATGGGAGTCTCTGGTGGTGAAGAAGG 480
Query 478 AGCTCGTAATGGTCCTTCTCTTATGCCTGGTGGATCTTTCACTGCGTATAACAATGTTAA 537
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AGCTCGTAATGGTCCTTCGCTTATGCCTGGTGGATCTTTCACTGCGTATAATAATGTTAA 540
Query 538 AGATATTCTTGAGAAAGTTGCTGCTCAAGTCGAAGATGGTCCTTGTGTTACATACATTGG 597
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 541 AGATATTCTTGAGAAAGTTGCTGCTCAAGTTGAAGATGGTCCTTGTGTTACTTACATTGG 600
Query 598 AGAAGGTGGATCTGGGAATTTTGTGAAAATGGTTCATAATGGGATTGAATATGGTGATAT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAAGGTGGATCTGGGAATTTTGTGAAAATGGTTCATAATGGGATTGAATATGGTGATAT 660
Query 658 GCAGCTGATTTCGGAGGCGTATGACGTGTTGAAGAACGTTGGTGGATTGAGTAATGATGA 717
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 GCAGCTGATTTCGGAGGCGTATGATGTGTTGAAGAACGTTGGTGGATTGAGTAATGATGA 720
Query 718 ATTGGCTGAGATCTTCACGGAGTGGAATCGAGGTGAGCTTGAGAGTTTCTTGGTTGAGAT 777
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTGGCTGAGATCTTTACGGAGTGGAATCGAGGTGAGCTTGAGAGTTTCTTGGTTGAGAT 780
Query 778 TACTTCGGATATATTTAGGGTTAAGGATGATTATGGTGATGGAGAGTTAGTGGATAAGAT 837
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TACATCGGATATTTTTAGGGTTAAGGATGATTATGGTGATGGAGAGTTAGTGGATAAGAT 840
Query 838 TTTGGATAAGACTGGTATGAAAGGTACAGGGAAATGGACGGTTCAGCAGGCGGCTGAGCT 897
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 TTTGGATAAGACTGGTATGAAAGGTACCGGGAAATGGACGGTTCAGCAGGCGGCTGAGCT 900
Query 898 TTCTGTTGCGGCGCCTACGATTGCTGCGTCGTTGGATTGTAGATACTTGAGTGGATTGAA 957
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 TTCTGTTGCGGCGCCTACTATTGCTGCGTCTTTGGATTGTAGATACTTGAGTGGATTGAA 960
Query 958 GGATGAGAGGGAGAATGCTGCTAAAGTTTTGGAAGAAGCTGGATTGAAGGAGGATATCGG 1017
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 961 GGATGAGAGAGAGAATGCTGCTAAAGTGTTGGAAGAAGCTGGTTTGAAGGAGGATATTGG 1020
Query 1018 TTCTGCGTCTCGTGGTGTTGATAAGAAGAGGTTGATTGATGATGTGAGGCAAGCTTTGTA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCTGCGTCTCGTGGTGTTGATAAGAAGAGGTTGATTGATGATGTGAGGCAAGCTTTGTA 1080
Query 1078 TGCTTCTAAGATCTGTAGTTATGCTCAAGGGATGAATTTGCTTAGGGCTAAGAGTTTAGA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGCTTCTAAGATCTGTAGTTATGCTCAAGGGATGAATTTGCTTAGGGCTAAGAGTTTAGA 1140
Query 1138 GAAAGGTTGGGACTTGAATTTGGGTGAAATGGCTAGGATTTGGAAAGGTGGGTGTATTAT 1197
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 GAAAGGGTGGGATTTGAATTTGGGTGAAATGGCTAGGATTTGGAAAGGCGGGTGTATTAT 1200
Query 1198 CAGGGCGGTTTTCTTGGACAGGATCAAGAAAGCTTACCAGAGAAACCCGAATTTGGCGAG 1257
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1201 CAGGGCGGTATTCTTGGACAGGATCAAGAAAGCTTATCAGAGAAACCCGAATTTGGCAAA 1260
Query 1258 CTTAGTGGTTGATCCTGATTTTGCTAAAGAGATGGTTCAGAGGCAAGCTGCATGGAGGAG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1261 CTTAGTGGTTGATCCTGATTTTGCTAAAGAGATGGTTCAGAGGCAAGCTGCGTGGAGGAG 1320
Query 1318 AGTGGTGGGTCTTGCTATATCTGCTGGGATTAGCACACCAGGAATGTGCGCAAGTTTAGC 1377
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1321 AGTGGTGGGTCTTGCTATCTCTGCTGGGATAAGCACACCAGGAATGTGCGCAAGTTTAGC 1380
Query 1378 GTATTTCGACACTTACAGGCGTGCTAGATTACCTGCGAATCTGGTTCAGGCGCAGAGAGA 1437
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1381 GTATTTCGACACTTACAGGCGTGCCAGATTACCTGCGAATCTGGTTCAGGCGCAGAGAGA 1440
Query 1438 TCTCTTTGGAGCTCATACATATGAGAGAACCGATCGTCCTGGTGCATACCACACTGAATG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TCTCTTTGGAGCTCATACATATGAGAGAACCGATCGTCCTGGTGCATACCACACTGAATG 1500
Query 1498 GACTAAGCTTGCAAGGAAGAGTCAGTAAAGCATGGACACAGTCCCTTGATTTGAGGGCT- 1556
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 1501 GACTAAGCTTGCAAGGAAGAGTCAGTAAAGCATCGACACAGTCCCTTGATT-GAGGT-TA 1558
Query 1557 TTATTT-CATCATAGAACACGAAAACAAATTGTTTCAGCTTATTTTTGTTGAGTTATAAT 1615
|| | | | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1559 TTCTCTGCGGCATAGAACACGAAAACAAATTGTTTCAGCGTATTTTTGTTGAGTTATAAT 1618
Query 1616 AAGAAATGCAATGCCCCTTGACTCTCTGTATCTGTCTGTTGATGATATCTGGAGAGTTTC 1675
|||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1619 AAGAAATGCAATGCCC-TGGACTCTCTGTATCTGTCTGTTGTTGATATCTGGAGAGTTTC 1677
Query 1676 CTTTATT 1682
|||||||
Sbjct 1678 CTTTATT 1684
> Ahg924525 jgi|Araly1|924525|scaffold_200086.1
Length=1504
Score = 1762 bits (954), Expect = 0.0
Identities = 1304/1472 (89%), Gaps = 28/1472 (2%)
Strand=Plus/Plus
Query 60 CAATGGAGTCCGTCGCTCTATCTCGCATAGGTCTCGCCGGTCTCGCAGTCATGGGACAAA 119
|||||||||||| ||| ||||| || || ||||| ||||| ||||| || ||||| || |
Sbjct 19 CAATGGAGTCCGCCGCACTATCCCGAATTGGTCTTGCCGGACTCGCCGTAATGGGCCAGA 78
Query 120 ACCTCGCCTTAAACATCGCCGATAAAGGATTCCCAATCTCCGTCTACAATCGAACCACTT 179
|||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 79 ACCTGGCCTTAAACATCGCCGAGAAAGGTTTCCCAATCTCAGTCTACAATCGAACCACTT 138
Query 180 CCAAAGTCGACGAAACCTTAGATCGTGCCTCCAACGAAGGAAAACTCCCAGTCGCTGGTC 239
||||||||||||||||| ||||||| ||| || ||||||||| ||||||||| | || |
Sbjct 139 CCAAAGTCGACGAAACCCTAGATCGAGCCGCCGTCGAAGGAAACCTCCCAGTCTCCGGCC 198
Query 240 AATACTCGCCTCGCGATTTCGTTCTCTCGATCCAACGGCCTAGATC-CGTTATCATCCTT 298
||||||| |||||||||||||| ||||||||||||||||||||||| | | ||||||||
Sbjct 199 AATACTCCCCTCGCGATTTCGTCCTCTCGATCCAACGGCCTAGATCTC-TCATCATCCTC 257
Query 299 GTCAAAGCCGGTGCTCCCGTTGACCAAACCATC-TCTGC-TCTCTCTGAATACATGGAGC 356
|||||||| || ||||||||||||||||| ||| | || | |||| || ||||||||||
Sbjct 258 GTCAAAGCTGGAGCTCCCGTTGACCAAACAATCGAC-GCGT-TCTCCGAGTACATGGAGC 315
Query 357 CTGGTGATTGTATCATCGACGGTGGAAATGAGTGGTATCAGAACACAGAGCGACGAATCG 416
| || ||||| ||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 316 CCGGAGATTGCATCATCGACGGTGGAAACGAATGGTATCAGAACACAGAGCGACGGATC- 374
Query 417 T-TGAAGCTGAG-AAGAAAGGATTGCTTTATTTAGGTATGGGAGTCTCCGGTGGTGAAGA 474
| ||||| ||| || ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 375 TCCGAAGCAGAGCAA-AAAGGATTGCTCTATTTAGGTATGGGAGTCTCCGGCGGCGAAGA 433
Query 475 AGGAGCTCGTAATGGTCCTTCTCTT-ATGCCTGGTGGATC-TTTCACTGCGTATAACAAT 532
||| |||||||| |||||||| || |||||||||||||| ||||| || ||| | ||
Sbjct 434 AGGTGCTCGTAACGGTCCTTC-GTTAATGCCTGGTGGATCATTTCA-AGCTTATGATAAC 491
Query 533 GTTAAAGATATTCTT-GAGAAAGTTGCTGCTCAAGTCGAAGATGGTCCTTGTGTTACATA 591
||||||||| |||| | |||||| || |||||||| |||||||| ||||||||||||||
Sbjct 492 ATTAAAGATA-TCTTGGGGAAAGTCGCAGCTCAAGTTGAAGATGGACCTTGTGTTACATA 550
Query 592 CATTGGAGAAGGTGGATCTGGGAATTTTGTGAAAATGGTTCATAATGGGATTGAATATGG 651
||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct 551 CATCGGAGAAGGTGGATCTGGAAATTTCGTGAAGATGGTTCATAATGGGATTGAGTATGG 610
Query 652 TGATATGCAGCTGATTTCGGAGGCGTATGACGTGTTGAAGAACGTTGGTGGATTGAGTAA 711
|||||||| |||| || || |||||||| |||||||||||||||||||| ||||| ||
Sbjct 611 AGATATGCAATTGATCTCTGAAGCGTATGATGTGTTGAAGAACGTTGGTGGTTTGAGCAA 670
Query 712 TGATGA-ATTGGCTGAGATCTTCACGGAGTGGAATCGAGGTGAGCTTGAGAGTTTCTTGG 770
||| || || || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TGAAGAGCTT-GCGGAGATTTTCACGGAGTGGAATCGAGGTGAGCTTGAGAGTTTCTTGG 729
Query 771 TTGAGATTACTTCGGATATATTTAGGGTTAAGGATGA-TTATGGTGATGGAGAGTTAGTG 829
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 730 TTGAGATTACTTCGGATATATTTAGGGTTAAGGATGAGTT-TGGTGATGGAGAGTTAGTT 788
Query 830 GATAAGATTTTGGATAAGACTGGTATGAAAGGTACAGGGAAATGGACGGTTCAGCAGGCG 889
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 789 GATAAGATTTTGGATAAGACTGGTATGAAAGGTACCGGGAAATGGACGGTGCAGCAAGCG 848
Query 890 GCTGAGCTTTCTGTTGCGGCGCCTACGATTGCTGCGTCGTTGGATTGTAGATACTTGAGT 949
|| ||||| ||||| ||||| || ||||||||||| |||||||||||||| || ||||||
Sbjct 849 GCGGAGCTGTCTGTGGCGGCTCCGACGATTGCTGCTTCGTTGGATTGTAGGTATTTGAGT 908
Query 950 GGATTGAAGGATGAGAGGGAGAATGCTGCTAAAGTTTTGGAAG-AAGCTGGATTGAAGGA 1008
|||||||| |||||||||||||||||||| ||||| ||| | | ||||||| ||||| ||
Sbjct 909 GGATTGAAAGATGAGAGGGAGAATGCTGCCAAAGTGTTG-AGGGAAGCTGGTTTGAAAGA 967
Query 1009 GGATATCGGTTCTGCGTCTCGTGGTGTTGATAAGAAGAGGTTGATTGATGATGTGAGGCA 1068
|| || |||||||||||| | || | ||||||||||| ||| |||||||||| |||||
Sbjct 968 AGAGATTGGTTCTGCGTCTAGCGGAATCGATAAGAAGAGATTGGTTGATGATGTTAGGCA 1027
Query 1069 AGCTTTGTATGCTTCTAAGATCTGTAGTTATGCTCAAGGGATGAATTTGCTTAGGGCTAA 1128
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1028 AGCTTTGTATGCTTCGAAGATTTGTAGTTATGCTCAAGGGATGAATTTGCTTAGAGCTAA 1087
Query 1129 GAGTTTAGAGAAAGGTTGGGACTTGAATTTGGGTGAAATGGCTAGGATTTGGAAAGGTGG 1188
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 1088 GAGTTTAGAGAAAGGTTGGAACTTGAATTTCGGTGAATTGGCTAGGATTTGGAAAGGTGG 1147
Query 1189 GTGTATTATCAGGGCGGTTTTCTTGGACAGGATCAAGAAAGCTTACCAGAGAAACCCGAA 1248
||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct 1148 GTGTATTATAAGAGCGGTTTTCTTGGATAGGATCAAGAAAGCTTACCAGAGGAACCCGGA 1207
Query 1249 TTTGGCGAG-CTTAGTGGTTGATCCTGATTTTGCTAAAGAGATGGTTCAGAGGCAAGCTG 1307
||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1208 TTTGGCGAGTCTT-GTGGTTGATCCTGAGTTTGCTAAAGAGATGGTTCAGAGACAAGCTG 1266
Query 1308 CATGGAGGAGAGTGGTGGGTCTTG-CTATATCTGCTGGGATTAGCACACCAGGAATGTGC 1366
| ||||| ||||||||||| |||| || | ||||| ||||||||||| ||||||||||||
Sbjct 1267 CTTGGAGAAGAGTGGTGGG-CTTGGCTGTTTCTGCAGGGATTAGCACGCCAGGAATGTGC 1325
Query 1367 GCAAGT-TTAGCGTATTTCGACACTTACAGGCGTGCTAGATTACCTGCGAATCTGGTTCA 1425
|| ||| || ||||||||||| ||||| || || |||||||| || || |||||||||||
Sbjct 1326 GCGAGTCTT-GCGTATTTCGATACTTATAGACGCGCTAGATTGCCGGCAAATCTGGTTCA 1384
Query 1426 GGCGCAGAGAGATCTCTTTGGAGCTCATACATATGAGAGAACCGATCGTCCTGGTGCATA 1485
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 1385 GGCGCAGAGAGATCTCTTTGGAGCTCATACTTACGAGAGGACCGATCGTCCTGGTGCGTA 1444
Query 1486 CCACACTGAATGGACTAAGCTTGCAAGGAAGA 1517
|||||| |||||||| |||||||| |||||||
Sbjct 1445 CCACACCGAATGGACCAAGCTTGCTAGGAAGA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68067267815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5