BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41680.1
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493820 jgi|Araly1|493820|fgenesh2_kg.7__3253__AT5G41680.1 2121 0.0
> Ahg493820 jgi|Araly1|493820|fgenesh2_kg.7__3253__AT5G41680.1
Length=1605
Score = 2121 bits (1148), Expect = 0.0
Identities = 1483/1635 (91%), Gaps = 61/1635 (4%)
Strand=Plus/Plus
Query 2 TTTGCTTGACTTCTT--G-A-GAAGATTCAGAGTTTCTCCG-TTCTCTATATGC-TCTCC 55
|||| |||||||||| | | ||||| ||||||||||| || |||| | | | | ||||
Sbjct 1 TTTGTTTGACTTCTTGAGAAGGAAGAATCAGAGTTTCT-CGATTCTTTGT-TTCTTCTCT 58
Query 56 ATCGGAAAGTCAATATAACCGGCTCTCGGGCCCATTGGAAAGAGCATCATCCTAAGCTCT 115
| ||||||||||| |||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 59 ACCGGAAAGTCAACATAACCGGCTCTTGGTCCCATTGGAGAGAGCATCATCCTAAGCTCT 118
Query 116 CTACCAGGTTTGACCAAGCTTATAGCCTTGGAGAACATTTGATTTCGATCTTGACGCTTT 175
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 119 CTACCAGGTTTGACCAAGCTTATAGCCTTGGAGAACTTTTGATTTCGATCTTGACGCTTT 178
Query 176 AAATTACCTCTACAAGTGTTTGCTTTCCTGTTGAACATTCTGGGTGCAATCGAGCG-GAG 234
||||||||||||| | || ||||| ||||||||||||| || || ||| |||
Sbjct 179 AAATTACCTCTAC-A---------TT-CTGTTCAACATTCTGGGTG-AAACGTGCGAGAG 226
Query 235 ATGATGGCTTGTTGCTTGCGAAATAAACGGCGCATGAAAGGTAAACTCTCATGGAAGTCA 294
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 227 ATGATGGCTTGTTGCTTGCGAAAGAAAAGGCGCATGAAAGGTAAACTCTCATGGAAGTCA 286
Query 295 AAGAAGAGAGATTTGTCTCATTCAGGAAACTGGGCACCAGAAGATGACAATGATGAAGGG 354
||||||||||||||||||| | | || |||||||| ||||||||||| ||| |||||||
Sbjct 287 AAGAAGAGAGATTTGTCTCCTGCCGGTAACTGGGCGCCAGAAGATGATGATGTTGAAGGG 346
Query 355 AAAATCGTTTTCTTTGGAGGAAGTAACTATACCTTTGATTTGGATGATTTGTTAGCTGCA 414
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AAAATCGTATTCTTTGGAGGAAGTAACTATACCTTTGATTTGGATGATTTGTTAGCTGCC 406
Query 415 TCTGCAGAAATTTTGGGGAAAGGCGCTCATGTTACAACCTACAAAGTAGCTGTGGAAGAC 474
||||||||||||||||||||||| ||| |||| |||||||||||||||| |||||| |||
Sbjct 407 TCTGCAGAAATTTTGGGGAAAGGTGCTTATGTCACAACCTACAAAGTAGTTGTGGAGGAC 466
Query 475 ACAGCCACGGTAGTAGTGAAGAGATTGGAGGAGGTGGTTGTTGGGAGAAGAGAGTTTGAG 534
|| || ||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 467 ACGGCAACGGTAGTAGTGAAGAGATTGGAGGAGGTGGTTGTCGGAAGACGAGAGTTTGAG 526
Query 535 CAACAAATGGAGATCGTTGGTAGAATCAGGCATGATAATGTAGCCGAGCTTAAAGCCTAC 594
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 527 CAACAAATGGAGATCGTTGGTAGAATAAGGCATGATAATGTAGCTGAGCTTAAAGCCTAC 586
Query 595 TACTATTCCAAGATCGATAAGCTCGCTGTTTACAGTTATTACAGTCAAGGAAACCTATTT 654
||||||||||| | ||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 587 TACTATTCCAAAAACGATAAGCTTGCTGTTTATAGCTATTACAGTCAAGGAAACCTATTC 646
Query 655 GAGATGCTGCACGGTAAGCTATCTTTCTGTATTCCGTT-GTCTATGCTTCTTTGGTATGC 713
||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |||
Sbjct 647 GAGATGCTGCACGGTAAGCTATCTTTCTGTATTCC-TTGGTCTATACTTCTTTGGTCTGC 705
Query 714 AGTATCGAAAACCAATAACTCAACTTTTGCA-G-G----A-GAGAG--CCAAGTACCTTT 764
| | |||| ||| ||||||||||||||| | | | ||||| || |||||||||
Sbjct 706 -CT-T-AAAAAGCAAGAACTCAACTTTTGCAGGAGATAAAGGAGAGAACCGAGTACCTTT 762
Query 765 AGATTGGGAGTCCCGTTTAAGAATCGCCATTGGTGCAGCAAGAGGGTTGGCTATAATCCA 824
||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 763 AGATTGGGAGTCCCGGTTAAGAATCGCCATTGGTGCAGCAAGAGGGCTGGCTATTATCCA 822
Query 825 CGAAGCAGACGACGGGAAGTTTGTCCACGGTAACATCAAATCCTCCAATATCTTCACGAA 884
||||||||||||||||||||||||||| || || |||||||||||||||||||||| |||
Sbjct 823 CGAAGCAGACGACGGGAAGTTTGTCCATGGCAATATCAAATCCTCCAATATCTTCATGAA 882
Query 885 CTCGA-AATGCTACGGCTGCATCTGCGATCTCGGCTTAACACACATCACGAAATCTCTCC 943
||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 883 CTC-ACAATGCTATGGCTGCATCTGCGATCTCGGCTTAACACACATCACGAAATCTCTAC 941
Query 944 CGCAGACTACCTTACGTTCTTCGGGTTACCACGCACCTGAGATAACAGATACAAGAAAGT 1003
| ||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct 942 CTCAGACTACCTTACGTTCATCAGGTTACCACGCACCTGAGATAACAGACACGAGAAAGT 1001
Query 1004 CCACACAGTTCTCTGATGTATACAGCTTCGGGGTGGTGTTACTCGAGCTTCTAACAGGGA 1063
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1002 CCACACAGTTCTCTGATGTATACAGCTTCGGAGTGGTATTACTCGAGCTTCTAACAGGGA 1061
Query 1064 AATCACCCGCGAGTCCGCTATC-ACTAGACGAAAACATGGACTTGGCGAGCTGGATAAGG 1122
|||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1062 AATCTCCCGCGAGTTTGCTATCAAC-AGACGAAAACATGGACTTGGCGAGCTGGATAAGG 1120
Query 1123 TCAGTGGTGTCGAAAGAGTGGACAGGAGAAGTATTCGATAAT-GAGCTAATGATGCAAAT 1181
|| ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 1121 TCGGTGGTGTCGAAAGAGTGGACAGGAGAAGTATTCGA-CATCGAGCTAATGAGGCAAAT 1179
Query 1182 GGGTATAGAAGAAGAGTTGGTTGAGATGTTGCAAATAGGTTTGGCTTGTGTTGCCTTAAA 1241
|| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1180 GGATATAGAAGAAGAGATGGTTGAGTTGTTGCAAATAGGTTTGGCTTGTGTTGCCTTGAA 1239
Query 1242 ACCTCAAGATCGACCTCATATAACACACATTGTAAAATTGATACAAGACATTCCAACAAA 1301
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1240 ACCTCAAGATCGACCTCATATAACACATATTGTAAAAATGATACAAGACATTCCAACAAA 1299
Query 1302 CTTCAATCTTTAAAGCA-ATTCCCAGATTTTCAAAACATAAAATTCGATTTCACATT-A- 1358
||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |
Sbjct 1300 CTTCAATCTTTAAAGCATTTTCTCAGATTATCAAAACATAAAATTCGATTTCACATTAAT 1359
Query 1359 T-AT--CATAAGCTAAAGTTATTCAATACAGTACCATAGAGAAAGTA-TTCAAAAACTAG 1414
| || ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||
Sbjct 1360 TAATAGCATAAGCTAAAGTTATTGAATACAGAACCATAGAGAAAGTATTTC-AAAACTAG 1418
Query 1415 CTAATG-AAAAAAGCATAAAAGAAGATTCGGCGAATCTAAGAACACGCGTA-A-AGATAT 1471
|||||| |||||||||| ||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 1419 CTAATGAAAAAAAGCAT-AAAGAAGATTCGGCGAATCTAAGAACATGCGTAGAGAGATAT 1477
Query 1472 GAAGAAGCCAAACCAGAGGAAGACCGATTCGATT-GATTTAGGTTGATGATGAAATTGGA 1530
||||||||||||||| ||| ||| || |||||| || || | | |||||||||||||
Sbjct 1478 GAAGAAGCCAAACCACAGG-AGA-AGA-TCGATTCGA-TT-CGAT--TGATGAAATTGGA 1530
Query 1531 TGGATCAGACAGGGCTAAGGAGCTGGAAGAGATGAGGTTTGGGATCGGAGTTCATGCCGA 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 TGGATCAGACAGGGCTAAGGAGCTGGAAGAGATGAGGTTTGGGATCGGAGTTCATGCCGA 1590
Query 1591 CGAAGATGACCAGAG 1605
||||||||||||||
Sbjct 1591 TGAAGATGACCAGAG 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60144496855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5