BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41720.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493813 jgi|Araly1|493813|fgenesh2_kg.7__3246__AT5G41720.1 924 0.0
> Ahg493813 jgi|Araly1|493813|fgenesh2_kg.7__3246__AT5G41720.1
Length=722
Score = 924 bits (500), Expect = 0.0
Identities = 614/669 (92%), Gaps = 8/669 (1%)
Strand=Plus/Plus
Query 11 AATCCTCTCTTTCACTTTTCTCTGGCGATGATGATGAATTCTCCGTTGGATTACGATGTG 70
||||||||||| ||||||||| ||||||||||| ||||||||| || | ||||||||
Sbjct 1 AATCCTCTCTTAAACTTTTCTCCGGCGATGATGAGGAATTCTCCCATGAACGACGATGTG 60
Query 71 TTGCTAGAGATCATGTCTTATTGTCCTGCAACGGAGATGGCAAAATTCCGTCTACTAAGC 130
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 61 ATGCTAGAGATCATGTCTTATTGTCCTGCAACGGAGATGGCAAAATTTCGTCTACTAAAC 120
Query 131 AAAGAATGCAACAAACGAAGTTATGAGATGAGTTTTATCAATCGTCATCTCCATAGAACC 190
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AAAGAATGCAACAAACGAAGTTATGAGATGAGTTTTCTCAATCGTCATCTCCATAGAACC 180
Query 191 AACTCTTTCCTCGGCTATATATTTTATTACAAAGATAACAAGTGGTTTAGGAATCACTCA 250
|||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 181 AACTCTTTTCTCGGCTATATCTTTTATTACAAAGATAACCATTGGTTTAGGAATCACTCC 240
Query 251 TGTTTTGTCTCCGGCGTCGATGAGAAAGATAAAA-ACCGAATCAATCTTGCCTTTCTTCC 309
||||||||||||||||||||||||||||| || | |||||||||||||||| | ||||||
Sbjct 241 TGTTTTGTCTCCGGCGTCGATGAGAAAGA-AATATACCGAATCAATCTTGCATATCTTCC 299
Query 310 TCCCCTTTGTAATGTATCCATCGAAGCTTGTGATACACATCATGGGATTTTGCTCTGTGT 369
||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 TCCTCGTTGTAATCCATCCATCGAAGCTTGTGATACATATCATGGGATTTTGCTCTGTGT 359
Query 370 CGATGTTGTGTTTAAAGGTAGGCAAAAG-ATACCAGATTACATCGTCTGCAAACCGGCTA 428
||||| ||||| |||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 360 CGATGATGTGTATAAAGGTAGG-AAAAGGATACCGGATTACATCGTTTGCAAACCGGCTA 418
Query 429 CAAAACAGTACCGGATCATACCAAACCCAAAGACCAGGTTTGGCACTGTCGCAACCGGTT 488
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 419 CAAAACAGTACCGAATCATACCAAACCCGAAGACCAGGTTTGGCACTGTTGCAACCGGTT 478
Query 489 TAATGGTGATTTCGTCGAACCCGTTTCGGTATAAGATCATTAGGGTTTCTGATACATGGG 548
||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 479 TAATGGTGATTTCGTATAACCCGTTTCGGTACAAGATCATTAGGGTTTCTGATACAGGGG 538
Query 549 CAAGAGTGGGTAGGGATGGTGTCTATAATCTACGAGAGAGTTTGTTTGAATAAAGATGAC 608
||| |||| |||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 539 CAACAGTGAGTAGAGATGGTGTCTATAATCTACGAGAGAGTTTGTTTCAATAAAAATGAT 598
Query 609 GTTgaaggaaaagataggagcgag-gaaggaagaagagatgggactatatagaggagaag 667
|||||||||||||| ||||||||| || |||| |||||| ||||||||| ||| |||||
Sbjct 599 GTTGAAGGAAAAGAAAGGAGCGAGAGA-GGAACAAGAGACGGGACTATAGAGA--AGAAG 655
Query 668 aaggaatat 676
|||||||||
Sbjct 656 AAGGAATAT 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5