BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41730.1
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493812 jgi|Araly1|493812|fgenesh2_kg.7__3245__AT5G41730.1 3402 0.0
Ahg474922 jgi|Araly1|474922|fgenesh2_kg.2__52__AT1G64300.2 1962 0.0
> Ahg493812 jgi|Araly1|493812|fgenesh2_kg.7__3245__AT5G41730.1
Length=2148
Score = 3402 bits (1842), Expect = 0.0
Identities = 2053/2153 (95%), Gaps = 22/2153 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCAATTCAGACAAATCGGAGAAGTTCTTGGAAGTCTAAATGCACTAATGGTATTA 60
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGCAATTCAGACAAATCGGCGAAGTTCTTGGAAGTCTTAATGCACTAATGGTATTA 60
Query 61 CAAGATGATATCTTGATCAACCAAAGACAATGTTGTTTGTTGTTAGAACTCTTCAGCTTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CAAGATGATATCTTGATCAACCAAAGACAATGTTGTTTGTTGTTAGAACTCTTCAGTTTA 120
Query 121 GCTTTCAACACGGTCGCAGAAGAGATCAGACAGAATCTAAAGCTTGAAGAGAAGCATACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTTCAACACGGTCGCAGAAGAGATCAGACAGAATCTAAAGCTTGAAGAGAAGCATACT 180
Query 181 AAATGGAGAGCTCTTGAACAACCTTTAAGGGAGCTTTATAGAGTTTTTAAAGAAGGAGAG 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 AAATGGAGAGCTCTTGAACAACCTTTAAGGGAGCTTTATAGAGTGTTTAAAGAAGGAGAG 240
Query 241 TTATATGTTAAGCATTGTATGGATAATAGTGATTGGTGGGGTAAAGTAATCAATCTTCAT 300
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 241 TTATATGTTAAGCATTGTATGGACAATAGTGATTGGTGGGGTAAAGTTATCAATCTTCAT 300
Query 301 CAGAACAAAGATTGTGTTGAGTTTCATATACACAACTTGTTCTGTTATTTCTCTGCGGTT 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGAATAAAGATTGTGTTGAGTTTCATATACACAACTTGTTCTGTTATTTCTCTGCGGTT 360
Query 361 GTTGAAGCCATCGAGGCTGCTGGTGAGATTTCGGGTCTTGACCCTTCTGAGATGGAGAGA 420
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTTGAAGCGATCGAGGCTGCTGGTGAGATTTCGGGTCTTGACCCTTCGGAGATGGAGAGA 420
Query 421 AGGAGAGTTGTGTTTTCAAGAAAGTATGATAGAGAGTGGAATGATCCTAAGATGTTTCAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 AGGAGAGTTGTGTTTTCAAGAAAGTATGATAGAGAGTGGAATGATCCTAAGCTGTTTCAA 480
Query 481 TGGAGGTTTGGGAAACAGTATTTGCTCTCGAGAGATATTTGCAGCCGGTTTGAGCATTCT 540
|||||||||||||||||||||||| | ||| | |||||||||| ||||| |||||||||
Sbjct 481 TGGAGGTTTGGGAAACAGTATTTGGTATCGCGGGATATTTGCATTCGGTTCGAGCATTCT 540
Query 541 TGGAGAGAAGATAGATGGAATCTAGTGGAGGCATTGCAAGAGAAGAGGAAATCGGATAGC 600
|||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 541 TGGAGAGAAGATAGGTGGAATCTAGTGGAGGCATTACAAGAAAAGCGGAAATCGGATAGC 600
Query 601 GATGATATTGGTAAAACCGAGAAGCGTTTAGCTGATTTGCTGTTGAAGAAGTTAACCGGT 660
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 GATGATATTGGTAAAACCGAGAAGCGTTTAGCGGATTTGCTGTTGAAGAAGTTAACCGGT 660
Query 661 TTGGAGCAGTTTAACGGTAAACTGTTTCCTAGTTCGATACTTCTTGGTTCAAAGGATTAC 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 TTGGAGCAGTTTAACGGTAAACTGTTTCCGAGTTCGATACTTCTTGGTTCAAAGGATTAC 720
Query 721 CAGGTGAAGAA-ACGGTTAGATGCAGATGGACAATACAAGGAGATTCAATGGTTAGGTGA 779
| |||||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 721 CTGGTGAA-AAGACGGTTAGATGCGGATGGACAATACAAGGAGATTCAATGGTTAGGTGA 779
Query 780 TAGTTTTGCACTAAGGCACTTTTTCAGCGATCTTGAGCCGCTAAGTTCTGAAATCTCGTC 839
||| ||||| | ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 780 TAGCTTTGCGGTGAGGCACTTTTTCAGCGATCTTGAGCCGCTAAGTTCTGAAATTTCTTC 839
Query 840 TCTTTTAGCGCTTTGTCATTCGAATATACTTCAGTACCTTTGTGGATTCTATGATGAAGA 899
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTGTTATCGCTTTGTCATTCGAATATACTTCAGTACCTTTGTGGATTCTATGATGAAGA 899
Query 900 AAGGAAAGAATGTTTTTTGGTTATGGAGTTGATGCACAAAGATTTGCAGAGCTACATGAA 959
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 AAGGAAAGAATGCTTTTTGGTTATGGAGTTAATGCACAAAGATTTGCAGAGCTACATGAA 959
Query 960 GGAGAATTGTGGACCAAGAAGAAGATATTTGTTCTCGAT-CCCTGTGGTGATTGATATCA 1018
|||||||||||||||||||||||||||| |||||||||| ||| || ||||| |||||||
Sbjct 960 GGAGAATTGTGGACCAAGAAGAAGATATCTGTTCTCGATTCCC-GTCGTGATCGATATCA 1018
Query 1019 TGTTGCAAATTGCAAGGGGGATGGAGTATCTTCATGGAAATGATATCTTCCATGGAGATT 1078
|| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 TGCTGCAAATTGCAAGGGGAATGGAATATCTTCATGGAAATGATATCTTCCATGGAGATT 1078
Query 1079 TAAACCCAATGAACATTCATCTGAAAGAGAGGAGTCACACCGAAGGTTACTTCCATGCGA 1138
||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 1079 TAAACCCCATGAACATTCATTTGAAAGAGAGGAGTCACACCGAAGGTTATTTCCACGCGA 1138
Query 1139 AGATTT-GTGGATTCGGTTTATCTTCAGTCGTTAAAGCGCAGTCTTC-C--TC------G 1188
| || | | ||||||||||| |||||||||||||||||||||||||| | || |
Sbjct 1139 AAATATCG-GGATTCGGTTTGTCTTCAGTCGTTAAAGCGCAGTCTTCTCGGTCTTCCTCG 1197
Query 1189 AAACCAGGCACTCCTGATCCTGTAATATGGTATGCACCTGAAGTTCTAGCAGAGATGGAA 1248
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1198 AAACCAGGCACTCCTGATCCTGTAATCTGGTATGCACCTGAAGTTCTAGCAGAGATGGAA 1257
Query 1249 CAAGACCTGAATGGTAAAACTCCGAAATCTAAGTTGACGCATAAAGCTGATGTGTATAGC 1308
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1258 CAAGACCTGAATGGTAAAACTCCGAAATCAAAGTTGACGCATAAAGCTGATGTGTATAGC 1317
Query 1309 TTTGCAATGGTGTGTTTTGAGCTTATAACAGGTAAAGTTCCATTTGAAGATAGTCATCTT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTTGCAATGGTGTGTTTTGAGCTTATAACAGGTAAAGTTCCATTTGAAGATAGTCATCTT 1377
Query 1369 CAAGGTGAACCAATGACTATCAATATTAGAATGGGAGAGAGACCTCTTTTCCCTTTCCCT 1428
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1378 CAAGGTGAACCAATGGCTATCAACATTAGAATGGGAGAGAGACCTCTTTTCCCTTTCCCT 1437
Query 1429 TCACCAAAATACCTCGTTAGTCTGATCAAACGATGTTGGCACTCAGAACCGAGTCAGCGT 1488
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1438 TCACCAAAATACCTCGTTAGTCTGATTAAACGGTGTTGGCACTCAGAACCGAGTCAGCGT 1497
Query 1489 CCTAACTTCTCTTCGATATGTCGGATACTACGCTACATCAAGAAGTTCCTAGTTGTGAAT 1548
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1498 CCTAACTTCTCTTCGATATGTCGGATACTTCGCTACATCAAGAAGTTCCTAGTTGTGAAT 1557
Query 1549 CCAGATCATGGTCATCCTCAAATGCAAACTCCACTT-GTTGATTGTTGGGACTTAGAAGC 1607
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1558 CCAGATCATGGTCATCCTCAAATGCAAACTCCA-TTAGTTGATTGTTGGGACTTAGAAGC 1616
Query 1608 AAGGTTCTTGAGAAAGTTTCCAGGTGATGCAGGGTCTCACACCGCGTCAGTGAATCAAAT 1667
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1617 AAGGTTCTTGAGAAAGTTTCCAGGAGATGCAGGGTCTCACACCGCGTCCGTGAATCAAAT 1676
Query 1668 ACCGTTCCAACTATACTCATACCGGGTTTTGGAAAAAGAGAAGATGAATCCAAACTCAAA 1727
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1677 CCCGTTCCAACTATACTCATACCGGGTTTCGGAAAGAGAGAAGATGAATCCAAACTCAAA 1736
Query 1728 AGAAAGCTCAGA-GACTAGTGA--A-TCTGAAAGCGTTTCAGTGGTTGAAGATCCACCTA 1783
|||||||||||| | | ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1737 AGAAAGCTCAGAAG-CAAGTGATCAATCTGAAAGCGTTTCAGTGGTTGAAGATCCACCTA 1795
Query 1784 ATGCCATGATTACAAGAGATACAAAGTCATTGTGTCTTGATACAATATCTGAATACTCAG 1843
||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1796 ATGCCATTATTGCAAGAGATACAAAATCATTGTGTCTAGATACAATATCTGAATACTCAG 1855
Query 1844 ATACAAGATCAGTCTACTCGGAAGCTCCCATGAAAAAGGTCTCAGCTCTAAAGAAAAGCG 1903
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1856 ATACAAGATCAGTCTACTCAGAAGCTCCCATCAAAAAGGTCTCAGCTTTAAAGAAAAGCG 1915
Query 1904 GCGAAATGGCAAAGCTCAGAAGAAGTCCAAGCTTAGGTTCAGAAAAGTTGAGATCGGCAG 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1916 GCGAAATGGCAAAGCTCAGAAGAAGTCCAAGCTTAGGTTCAGAAAAGTTGAGATCAACAG 1975
Query 1964 GAACTTCAACGGTAAAAGCAAGATCATCGCCAAAAGTATCACCACTGAGTCCATTTGGAA 2023
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1976 GAACTTCACCGGTAAAAGCAAGATCATCGCCAAAAGTATCAGCATTGAGTCCATTTGGAA 2035
Query 2024 GAAGCATTAAAGCAAGGAAGGATAATCGATTGCCTTTGAGTCCAATGAGTCCTTTAACCC 2083
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2036 GAAGTATTAAAGCAAGGAAAGATAATCGATTGCCTTTGAGTCCAATGAGTCCTTTAAGCC 2095
Query 2084 CTGGAATACGTAGACAACAGACTGGTCATGCTTCAGACTCTGAGCTTACTTAG 2136
| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2096 CAGGAATACGTAGACAACATACTGGTCATGCTTCAGACTCTGAGCTTACTTAG 2148
> Ahg474922 jgi|Araly1|474922|fgenesh2_kg.2__52__AT1G64300.2
Length=2609
Score = 1962 bits (1062), Expect = 0.0
Identities = 1831/2191 (84%), Gaps = 98/2191 (4%)
Strand=Plus/Plus
Query 1 ATGGAGCAATTCAGACAAATCGGAGAAGTTCTTGGAAGTCTAAATGCACTAATGGTATTA 60
|||||||||||||| ||||||||||| |||||||||||| |||| || ||||||||||||
Sbjct 276 ATGGAGCAATTCAGGCAAATCGGAGAGGTTCTTGGAAGTTTAAACGCGCTAATGGTATTA 335
Query 61 CAAGATGATATCTTGATCAACCAAAGACAATGTTGTTTGTTGTTAGA-ACTCTTCAGCTT 119
||||| |||||||| |||||||||||||||||||||||||||||||| | | ||||| ||
Sbjct 336 CAAGACGATATCTTAATCAACCAAAGACAATGTTGTTTGTTGTTAGATA-TTTTCAGTTT 394
Query 120 AGCTTTCAACACGGTCGCAGAAGAGATCAGACA-GAATCTAAAGCTTGAAGAGAAGCATA 178
||||||||||| || || |||||||||||||| | | | |||||||||||||||||||
Sbjct 395 GGCTTTCAACACCGTAGCCGAAGAGATCAGACACCACT-TGAAGCTTGAAGAGAAGCATA 453
Query 179 CTAAATGGAGAGCTCTTGAACAACCTTTAAGGGAGCTTTATAGAGTTTTTAAAGAAGGAG 238
|||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||| |
Sbjct 454 CTAAATGGAGAGCTCTTGAACAGCCTTTGAGAGAGCTTTATCGAGTTTTTAAAGAAGGCG 513
Query 239 AGTTATATGTTAAGCATTGTATGGATAATAGTGATTGGTGGGGTAAAGTAATCAATC-TT 297
| | |||||| | |||||||| ||||| ||||||||||||||||| ||||| | ||
Sbjct 514 AAATGTATGTTCGGAATTGTATGTCTAATAAAGATTGGTGGGGTAAAGTTATCAA-CTTT 572
Query 298 CATCAGAACAAAGATTGTGTTGAGTTTCATATACACAACTTG-TTCTGTTATTTCTCTGC 356
||||||||||||||||||||||||||||| || ||||| ||| || ||||| ||||| ||
Sbjct 573 CATCAGAACAAAGATTGTGTTGAGTTTCACATTCACAATTTGCTT-TGTTACTTCTCGGC 631
Query 357 GGTTG-TTGAAGCCATCGAGGCTGCTGGTGAGATTTCGGGTCTTGACCCTTCTGAGATGG 415
| || | |||||||||||| | || ||||||||||||||||| |||||| |||||||||
Sbjct 632 TG-TGATCGAAGCCATCGAGACAGCGGGTGAGATTTCGGGTCTCGACCCTGCTGAGATGG 690
Query 416 AGAGAAGGAGAGTTGTGTTTTCAAGAAAGTATGATAGAGAGTGGAATGATCCTAAGATGT 475
|||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 691 AGAGGAGGAGAGTTGTGTTTTCAAGAAAGTATGATAGGGAGTGGAATGATCCCAAGCTGT 750
Query 476 TTCAATGGAGGTTTGGGAAACAGTATTTGCT-CTCGAGAGATATTTGCAGCCGGTTTGAG 534
|||| ||||||| |||||||||||||||| | | |||| |||||||||| ||||| |||
Sbjct 751 TTCAGTGGAGGTATGGGAAACAGTATTTGGTAC-CGAGGGATATTTGCATTCGGTTCGAG 809
Query 535 CATTCTTGGAGAGAAGATAGATGGAATCTAGTGGAGGCATTGCAAGAGAAGAGGAAATCG 594
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 810 CATTCTTGGAGAGAAGATAGGTGGAATCTAGTGGAGGCATTGCAAGAGAAGAGGAAGTCC 869
Query 595 GATAGCGATGATATTGGTAAAACCGAGAAGCGTTTAGCTGATTTGCTGTTGAAGAAGTTA 654
| |||||||| ||||| || || |||||||||||||||||||| ||||||||||| ||
Sbjct 870 AAGAGCGATGAGATTGGGAAGACTGAGAAGCGTTTAGCTGATTTTCTGTTGAAGAAACTA 929
Query 655 ACCGGTTTGGAGCAGTTTAACGGTAAACTGTTTCCTAGTTCGATACTTCTTGGTTCAAAG 714
|| || ||||| |||||||||||||| || || || |||||||||||| ||||||| |||
Sbjct 930 ACTGGATTGGAACAGTTTAACGGTAAGCTCTTCCCGAGTTCGATACTTGTTGGTTCTAAG 989
Query 715 GATTACCAGGTGAAG-AAACGGTTAGATGCAGATGGACAATACAAGGAGATTCAATGGTT 773
|||||||| |||| | | | |||| || | ||| || ||||||||||||||||||||
Sbjct 990 GATTACCAAGTGAGGCGGA-GATTAGGTGGTGGTGGTCAGTACAAGGAGATTCAATGGTT 1048
Query 774 AGGTGATAGTTTTGCACTAAGGCACTTTTTCAGCGATCTTGAGCCGCT-AAGTTCTGAAA 832
||| |||||||||| | || || |||||| | |||||||||||| | || | | || |
Sbjct 1049 AGGGGATAGTTTTGTGTTGAGACATTTTTTCGGGGATCTTGAGCCGTTGAA-TGCAGAGA 1107
Query 833 TCTCGTCTCTTTTAGCGCTTTGTCATTCGAATATACTTCAGTACCTTTGTGGATTCTATG 892
| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TTTCTTCTCTGTTATCGCTTTGTCATTCGAATATACTTCAGTACCTTTGTGGATTCTATG 1167
Query 893 ATGAAGAAAGGAAAGAATGTTTTTTGGTTATGGAGTTGATGCACAAAGATTTGCAGAGCT 952
||||||||||||||||||||| | ||||||||||||| ||||||||||||||| | ||||
Sbjct 1168 ATGAAGAAAGGAAAGAATGTTCTCTGGTTATGGAGTTAATGCACAAAGATTTGAAAAGCT 1227
Query 953 ACATGAAGGAGAATTGTGGACCAAGAAGAAGATAT-TTGTTCTC-GATCCCTGTGGTGAT 1010
|||||||||||||||||||||| |||||||| ||| || ||||| | |||| || |||||
Sbjct 1228 ACATGAAGGAGAATTGTGGACCTAGAAGAAGGTATCTT-TTCTCTGTTCCC-GTTGTGAT 1285
Query 1011 TGATATCATG-TTGCAAATTGCAAGGGGGATGGAGTATCTTCATGGAAATGATATCTTCC 1069
||||| ||| || ||||| || || |||||||| ||||||||| ||||| || ||||
Sbjct 1286 CGATATAATGCTT-CAAATCGCGAGAGGGATGGAATATCTTCATTCTAATGAGATTTTCC 1344
Query 1070 ATGGAGATTTAAA-CCCAATGAACATTCATCTGAAAGAGAGGAGTCACACCGAAGGTTAC 1128
|||||||||| || |||| ||||||||| | |||||||||| |||||||||||||||||
Sbjct 1345 ATGGAGATTTGAATCCCA-TGAACATTCTTTTGAAAGAGAGAAGTCACACCGAAGGTTAT 1403
Query 1129 TTCCATGCGAAGATTTGTGGATTCGGTTT-A--TC--TTCAG--TC-GTTAAAG-CGCAG 1179
||||| ||||| || | || ||||| || | || || | || || | | | |
Sbjct 1404 TTCCACGCGAAAATCTCAGGTTTCGGCTTGACCTCAGTTAAAAATCAGTCATTTTCTCGG 1463
Query 1180 TCTTCCTCGAAACCAGGCACTCCTGATCCTGTAATATGGTATGCACCTGAAGTTCTAGCA 1239
||||||| | |||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1464 GCTTCCTCTAGACCAACCACACCCGATCCTGTAATATGGTATGCACCTGAAGTTCTAGCA 1523
Query 1240 GAGATGGAACAAGACCTGAATGGTAAAACTCCGAAATCTAAGTTGACGCATAAAGCTGAT 1299
|||||||||||||| || || |||| |||||||| ||| ||||| || ||||||||||||
Sbjct 1524 GAGATGGAACAAGATCTCAAAGGTACAACTCCGAGATCGAAGTTTACACATAAAGCTGAT 1583
Query 1300 GTGTATAGCTTTGCAATGGTGTGTTTTGAGCTTATAACAGGTAAAGTTCCATTTGAAGAT 1359
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1584 GTTTATAGCTTTGCTATGGTGTGTTTCGAGCTTATAACCGGTAAAGTTCCATTTGAAGAT 1643
Query 1360 AGTC-ATCTTCAAGGTGA-ACCAATGACTATCAATATTAGAATGGGAGAGAGACCTCTTT 1417
| | |||||||||| || | |||| ||| || || |||| ||||||||||||||| |
Sbjct 1644 -GACCATCTTCAAGGCGAGAA-AATGGCTAAGAACATAAGAACGGGAGAGAGACCTCTCT 1701
Query 1418 TCCCTTTCCCTTCACCAAAATACCTCGTTAGTCTGATCAAACGATGTTGGCACTCAGAAC 1477
|||| |||||||| |||||||||||||||||||| || ||||| |||||||| |||||||
Sbjct 1702 TCCCATTCCCTTCGCCAAAATACCTCGTTAGTCTAATTAAACGGTGTTGGCATTCAGAAC 1761
Query 1478 CGAGTCAGCGTCCTAAC-TTCTCTTCGATATGTCGGATACTACGCTACATCAAGAAGTTC 1536
||||||||||||| ||| |||||||||||||| ||||| || |||||||||||||| |||
Sbjct 1762 CGAGTCAGCGTCC-AACATTCTCTTCGATATGCCGGATCCTCCGCTACATCAAGAAATTC 1820
Query 1537 CTAGTTGTGAATCCAGATCATGGTCATCCTC-AAATGCAAA-CTCCACTTGTTGATTGTT 1594
|||||||||||||| ||||| || || |||| |||| |||| | |||||||||||||| |
Sbjct 1821 CTAGTTGTGAATCCGGATCACGGCCA-CCTCCAAATCCAAAAC-CCACTTGTTGATTGCT 1878
Query 1595 GGGACTTAGAAGCAAGGTTCTTGAGAAAGTT-TCCA-GGTGATGCAGGGTCTCACACCGC 1652
|||||||||||||||| ||||||| |||||| || | || | | |||| |||||| | |
Sbjct 1879 GGGACTTAGAAGCAAGATTCTTGAAAAAGTTCTCAATGGAG-T-CAGGTTCTCACGCAG- 1935
Query 1653 G-TCAGTGA-ATCAAATACCGTTCCAACTATACTCATACCGGGTTTTGGAAAAAGAGAAG 1710
| || |||| | |||||||| ||||| || ||||||||| || || || |||||||||
Sbjct 1936 GATCCGTGACA-CAAATACCATTCCAGCTCTACTCATACAGGATTGCAGAGAAAGAGAAG 1994
Query 1711 ATGAATCCAAACTC-AA-AA-GAA-AGC-T-CAGAGACTAGTG-AATCTGA-----AAGC 1758
|||| |||||||| || || ||| || | |||| || || | |||||| |||
Sbjct 1995 ATGAGTCCAAACTTTAACAAAGAAGAGAATTCAGAAAC-AGGGGAATCTGTTTCTGAAGG 2053
Query 1759 -GTTTCAGTGGTTGAAGATCCACCTAATGCCATGATTACAA-GAGATACAAAGTCATTGT 1816
||||||||||||||||||||||| || | ||| ||| | |||||||||||||||
Sbjct 2054 TGTTTCAGTGGTTGAAGATCCACC-AA--CAATGC---CAATGT-ATACAAAGTCATTGT 2106
Query 1817 GTCTT-GATACAATATCTGAATACTCAGATACAAGATCAGTCTACTCGGAAGCTCCCATG 1875
| ||| ||| ||||||||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct 2107 G-CTTAGATGCAATATCTGAATACTCAGATATAAGATCAGTTTACTCAGAAGCTCCAATC 2165
Query 1876 AAAAAGGTC-TCAGCTCTAAAGAAAAGCGGCGAAATGGCAAAGCTCAGAAGAAG-TCCAA 1933
|||||| | |||||| |||||||||| || || | ||| |||||||| || ||
Sbjct 2166 AAAAAGA-CATCAGCTTTAAAGAAAAGTGGTGACACCATAAAAAACAGAAGAAACTC-AA 2223
Query 1934 GCTTAGGTTCA-GAAAAGTTGAGATCGGCAGGAACTTCAACGGTAAAAGCAAGATCATCG 1992
|| ||||| | | || || ||||| | || | ||||| | |||||| |
Sbjct 2224 TCTCAGGTTTACG----GTC----TC--CAGGATCATCGCCTATAAAACCGAGATCAACA 2273
Query 1993 CCAAAAGT---ATCACCACTGAGTCCATTTGGAAGAAGCATTA--AA-GCAAGGAAGGAT 2046
|| ||||| ||||||||| ||||||||||||||||||| | || ||||||||||||
Sbjct 2274 CCGAAAGTGTCATCACCACTAAGTCCATTTGGAAGAAGCAGCAGCAAAGCAAGGAAGGAT 2333
Query 2047 A-ATCGATTGCCTTTGAGTCCAATGAGTCCTTTAACCCCTGGAATACGTAGACAACAGAC 2105
| | |||||||||||||||| ||||||||||| | || ||||| ||||||||||| ||
Sbjct 2334 ACAA-GATTGCCTTTGAGTCCTATGAGTCCTTTGAGCCATGGAAGACGTAGACAACTCAC 2392
Query 2106 TGGTCATGCTTCAGACTCTGAGCTTACTTAG 2136
||||| ||||||||||||||||||||| |||
Sbjct 2393 TGGTCCTGCTTCAGACTCTGAGCTTACATAG 2423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80370416950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5