BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41760.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947541 jgi|Araly1|947541|scaffold_703770.1 1714 0.0
> Ahg947541 jgi|Araly1|947541|scaffold_703770.1
Length=1065
Score = 1714 bits (928), Expect = 0.0
Identities = 1011/1052 (96%), Gaps = 2/1052 (0%)
Strand=Plus/Plus
Query 91 GAACATTAATGGCGGCTACTCCGTGGTACTTTGTCGCAGTACTTCTCACCATTCTTACCA 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 15 GAACATTAATGGCGGCTACTCCGTGGTACTTTGTCGCAGTACTTCTCACCATTCTCACCA 74
Query 151 GCTCTCAGGGGATTCTAACAACTCTTTCTCAAAGTGATGGAGGTTATAAGTATGATTATG 210
| |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 75 GTTCTCAGGGGATTTTAACAACTCTTTCTCAAAGCAATGGAGGTTACAAGTATGATTATG 134
Query 211 CTACTGTTCCCTTTCTTGCTGAAGTTTTTAAGCTGATCA-TTTCTGGTTTATTTCTCTGG 269
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 135 CTACTGTTCCCTTTCTTGCTGAAGTTTTTAAGCTGAT-AGTCTCTGGTTTATTTCTCTGG 193
Query 270 AGAGAGATGCGGACATCTTCCTCAACAACTTCAAGGATTACTACGGATTGGAAGAGTGTG 329
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 194 AGAGAGATGCGGACATCTTCCTCAACAACTTCGAGGATTACTACGGATTGGAAGAGTGTG 253
Query 330 CGATTATTTGTTATTCCGTCTCTTATTTATCTGATACATAACAATGTGCAGTTTGCTACA 389
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 254 CGATTATTTGTTATTCCTTCTCTTATATACCTGATACATAACAATGTGCAGTTTGCTACA 313
Query 390 TTGACTTATGTGGATACGTCCACTTATCAGATAATGGGTAATTTGAAGATTGTGACCACT 449
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TTGACTTATGTAGACACATCCACTTATCAGATAATGGGTAATTTGAAGATTGTGACCACT 373
Query 450 GGCATACTGTTTAGGTTATTTTTGAAAAGGAAACTATCTAAACTTCAGTGGATGGCAATT 509
|| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GGTATACTCTTCAGGTTGTTTTTGAAAAGGAAACTATCTAAACTTCAGTGGATGGCAATT 433
Query 510 GGTCTTTTAGCTGTTGGAACAACTACCAGCCAGGTTAAGGGTTGTGGAGAAGCTTCTTGT 569
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 434 GGTCTTTTAGCTGTTGGAACAACTACCAGCCAGGTTAAGGGTTGCGGAGAAGCTTCATGT 493
Query 570 GATTCTTTATTCACGGCACCAATACAAGGTTATTTGCTGGGCATCCTCTCAGCTGGTTTG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GATTCTTTATTCACGGCACCAATACAAGGTTATTTGCTGGGCATCCTCTCAGCTGGTTTG 553
Query 630 TCCGCGCTAGCTGGAATCTACACAGAGTTTCTGATGAAGAGAAACAATGACACCTTATAC 689
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 554 TCTGCGCTAGCCGGAATCTACACAGAGTTTCTGATGAAGAGAAACAACGACACCTTATAC 613
Query 690 TGGCAAAACTTGCAGTTATATACGTTTGGTTCACTTTTCAACGTAGCTCGACTTATAGCA 749
|||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct 614 TGGCAAAACTTGCAATTGTATACGTTTGGTTCACTTTTCAACGTTGCCCGACTTATAGCA 673
Query 750 GATGATTTCAGACACGGGTTTGAAAAGGGTCCTTGGTGGCAACGTATCTTTGATGGGTAC 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GATGATTTCAGACACGGGTTTGAAAAGGGTCCTTGGTGGCAACGTATCTTTGATGGGTAC 733
Query 810 AGCATCACCACTTGGCTGGTAGTTCTGAATCTCGGATCCACTGGCTTACTGGTCTCGTGG 869
||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 734 AGCATCACCACTTGGATGGTAGTTCTGAATCTCGGATCCACCGGCTTACTGGTGTCGTGG 793
Query 870 TTAATGAAGTATGCAGACAACATCGTCAAGGTTTATTCTACATCAATGGCGATGCTACTT 929
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 794 TTAATGAAGTATGCAGACAATATCGTGAAGGTTTATTCTACATCAATGGCAATGCTACTT 853
Query 930 ACTATGGTTGCATCCATATACCTTTTTAGCTTCAAACCGACACTGCAGCTTTTCTTGGGT 989
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 854 ACTATGGTTGCATCCATATACCTCTTCAGCTTCAAACCAACACTGCAGCTTTTCTTGGGT 913
Query 990 ATTGTCATATGCATCATGTCACTCCATATGTACTTTGCTCCTCCACACACGCTCGTGGAC 1049
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 914 ATTGTCATATGCATCATGTCACTTCATATGTACTTTGCTCCTCCACACACGCTCGTGGAC 973
Query 1050 TTGCCCGTGACAAACGAAGCACATGCCAAGACCTTAAAGCAAGTTGTCGTAGAAGAAAAG 1109
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TTGCCAGTGACAAACGAAGCACATGCCAAGACCTTAAAGCAAGTTGTCGTAGAAGAAAAG 1033
Query 1110 ACAGATTCTTGAATTAAATTGGACGAAAAGGT 1141
|||||||||||||| |||||||||||||||||
Sbjct 1034 ACAGATTCTTGAATCAAATTGGACGAAAAGGT 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5