BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G41761.1

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493809 jgi|Araly1|493809|fgenesh2_kg.7__3242__AT5G41761.1         584    2e-166


> Ahg493809 jgi|Araly1|493809|fgenesh2_kg.7__3242__AT5G41761.1
Length=510

 Score =  584 bits (316),  Expect = 2e-166
 Identities = 404/446 (91%), Gaps = 8/446 (2%)
 Strand=Plus/Plus

Query  1    ATGGGAATCAAATTCAGCCAAGGTCCTTCGAATACAACCATTCACAACAGAAGTCATCAA  60
            |||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||
Sbjct  1    ATGGGAATCAAATTCAGCCATGTTCCTTCGAATACAACCATTCACTACATAAGTCATCAA  60

Query  61   GATGGTGAGGATCAAAGGAACGAGACGGCGACGAAGATCAATCATGACAAGCCTCAAAAT  120
            |||||||| |||||||||| | ||||| | |||||| |  |||| |||||| ||||||||
Sbjct  61   GATGGTGAAGATCAAAGGAGCAAGACGACCACGAAGGTTGATCAAGACAAGTCTCAAAAT  120

Query  121  CAATCAAGTAGCTTTCAGATTCCACTTCATTATCCAAAGTATACAAAGAGTGATTATGAG  180
            | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGATCAAGCAGCTTTCAGATTCCACTTCATTATCCAAAGTATACAAAGAGTGATTATGAG  180

Query  181  AAAATGCCAGAGTGGCAATTGGATCGGCTTCTGAGAGAGTACGGCTTGCCGGTTATCGGA  240
            ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct  181  AAAATGCCAGAGTGGCAATTGGATCAGCTTCTGAGAGAGTATGGCTTGCCGGTTATCGGA  240

Query  241  GATTCTTACGAGAAGAGGAAATTTGCCATCGGAGCATTTCTCTGGTCGTCGGAGAACGAG  300
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  241  GATTCTTACGAGAAGAGGAAATTTGCCATCGGAGCTTTTCTCTGGTCGTCGGAGAACGAG  300

Query  301  CACTAGATCATATGTTATCGTAATAGACGTCATCGTTTCATATGGTACTGTTTGAATAAA  360
            |||||||| |  | | ||||||     |||| |||||||||||||| || ||| ||||||
Sbjct  301  CACTAGAT-AG-TCTCATCGTA-----CGTCGTCGTTTCATATGGTGCTATTTAAATAAA  353

Query  361  GATAAGTTGGTGAAAGCGTGGAAAAGAAACATGTTTGCATGTAGATATTATCCTGGACat  420
             ||||||||||||||  | | ||||||| |||||||||||||| |||||||| |||||||
Sbjct  354  AATAAGTTGGTGAAATTGAGTAAAAGAA-CATGTTTGCATGTATATATTATCTTGGACAT  412

Query  421  gtatgttttatataatatatatatat  446
            |||||||||||| |||||||||||||
Sbjct  413  GTATGTTTTATAAAATATATATATAT  438


 Score = 97.1 bits (52),  Expect = 1e-19
 Identities = 66/72 (92%), Gaps = 3/72 (4%)
 Strand=Plus/Plus

Query  473  TGTTTCTCTACTCTCCATGTA---TGTTACCTCATGGGCACGACATTTGTAATAACTATA  529
            |||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||
Sbjct  439  TGTTTCTCTACTCTCCATGTATGTTGTTACCTCATGGGCACGACATTTGTAATAGCTATA  498

Query  530  CTAAGCTTAATA  541
            |||| ||| |||
Sbjct  499  CTAAACTTTATA  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21786841319


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5