BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41800.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493805 jgi|Araly1|493805|fgenesh2_kg.7__3238__AT5G41800.1 2453 0.0
> Ahg493805 jgi|Araly1|493805|fgenesh2_kg.7__3238__AT5G41800.1
Length=1528
Score = 2453 bits (1328), Expect = 0.0
Identities = 1466/1532 (96%), Gaps = 12/1532 (1%)
Strand=Plus/Plus
Query 2 TCATCATCATTCCATATATAAATCATTCACTTGTAGAATCTTCTTCTCTTTCACACTAAA 61
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1 TCATCATCATTCCATATATAAATCATTCACTTGCAGAATCTTCTTCTCTTTCACACT-AA 59
Query 62 ATTCATCGATGACGGATCCTCCCAGACCCGACCCGTTTCCTGTTACCCGACTCGATTCCG 121
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 A-TCATCAATGACGGATCCTCCTAGACCCGACCCGTTTCCTGTTACCCGACTCGATTCCG 118
Query 122 ACGCCGGTGCTCTCTTCGTCCTCCAATCAAAAGGCGAGTGGTGGCACGCCGGATTTCATC 181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACGCCGGAGCTCTCTTCGTCCTCCAATCAAAAGGCGAGTGGTGGCACGCCGGATTTCATC 178
Query 182 TAACGACGGCGATTGTTGGTCCGACGATATTGACATTACCATATGCGTTTAGAGGATTAG 241
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 179 TAACGACGGCGATTGTTGGTCCAACGATATTGACATTACCGTATGCGTTCAGAGGATTAG 238
Query 242 GATGGTGGTTAGGGTTTGTTTGTTTAACGACGATGGGACTCGTTACTTTCTACGCTTATT 301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 GATGGTGGTTAGGGTTTGTTTGTTTAACGACGATGGGTCTCGTTACTTTCTACGCTTATT 298
Query 302 ACCTCATGTCTAAGGTTCTTGATCACTGTGAAAAATCCGGCCGCCGTCACATCCGTTTCC 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 ACCTCATGTCTAAAGTTCTTGATCACTGTGAAAAATCCGGCCGCCGTCACATCCGGTTCC 358
Query 362 GGGAACTCGCCGCCGATGTTCTTGGATCTGGATTGATGTTTTATGTAGTGATCTTTATTC 421
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 GGGAACTCGCCGCCGATGTTCTTGGATCTGGATGGATGTTTTATGTAGTGATCTTTATTC 418
Query 422 AAACAGCTATCAACACTGGAATTGGTATTGGCGCCATTCTACTTGCAGGTCAATGTCTTG 481
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 AAACAGCTATCAACACTGGAATTGGTATTGGCGCTATTCTACTTGCAGGTCAATGTCTTG 478
Query 482 ATATAATGTATTCGAGTCTTTTCCCGCAAGGAACGTTGAAGCTTTACGAGTTCATTGCTA 541
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATATAATGTACTCGAGTCTTTACCCGCAAGGAACGTTGAAGCTTTACGAGTTCATTGCTA 538
Query 542 TGGTGACTGTTGTGATGATGGTTCTCTCACAGCTTCCAAGTTTTCACTCTCTTAGACACA 601
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 TGGTGACTGCTGTGATGATGGTTCTCTCACAGCTCCCAAGTTTTCACTCTCTTAGACACA 598
Query 602 TTAACTGTGCGTCTCTGCTTCTCAGCTTAGGATATACTTTCCTCGTCGTTGGGGCTTGTA 661
| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TAAACTTTGCGTCTCTGATTCTCAGCTTAGGATATACTTTCCTCGTCGTTGGGGCTTGTA 658
Query 662 TCAACCTAGGTTTGTCGAAAAACGCTCCTAAACGTGAGTATTCTCTAGAGCATTCGGATT 721
| |||||||||||||| ||||||||||||||||| || |||||| | |||||||||||||
Sbjct 659 TTAACCTAGGTTTGTCTAAAAACGCTCCTAAACGCGACTATTCTTTGGAGCATTCGGATT 718
Query 722 CAGGGAAAGTTTTTAGTGCCTTCACATCAATTTCGATCATAGCTGCTATTTTCGGAAATG 781
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 CAGGGAAAGTTTTTAGTGCCTTCACATCGATTTCGATCATAGCTGCTATTTTCGGAAATG 778
Query 782 GAATCTTACCCGAAATACAGGCAACTCTTGCTCCACCAGCCACAGGGAAGATGTTGAAAG 841
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 GAATCCTACCCGAAATACAGGCAACTCTTGCTCCACCAGCAACAGGGAAGATGTTGAAAG 838
Query 842 GACTATTGTTGTGTTATAGTGTGATCTTCTTCACGTTTTACTCTG-CTGCAATTTCGGGA 900
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 839 GACTATTGTTGTGTTATAGTGTGATCTTCTTCACGTTTTACTC-GACTGCAATTTCGGGA 897
Query 901 TATTGGGTTTTTGGTAACAATTCGAGCTCTAATATCCTCAAGAACTTAATGCCTGATGAA 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 TATTGGGTTTTTGGTAACAATTCGAGCTCTAATATTCTCAAGAACTTAATGCCTGATGAA 957
Query 961 GGACCGACTCTGGCTCCTATCGTGGTGATTGGCTTAGCTGTCATCTTTGTCCTTCTTCAG 1020
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 GGACCGACTTTGGCTCCTATCGTGGTGATTGGCTTAGCGGTCATCTTTGTCCTTCTTCAG 1017
Query 1021 CTTTTCGCCATTGGCCTTGTGTATTCTCAAGTTGCGTATGAAATAATGGAGAAGAAATCA 1080
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1018 CTTTTCGCCATTGGCCTCGTGTATTCTCAAGTTGCATATGAGATAATGGAGAAGAAATCA 1077
Query 1081 GCGGATACAACAAAAGGGATATTCTCAAAACGCAACCTTGTGCCGCGTTTGATACTAAGA 1140
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1078 GCGGATACAACAAAAGGGATATTCTCAAGACGCAACCTTGTGCCCCGTTTGATACTAAGA 1137
Query 1141 ACACTATATATGGCGTTTTGCGGGTTCATGGCAGCGATGCTACCGTTCTTTGGGGATATA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 ACACTATATATGGCGTTTTGCGGGTTCATGGCAGCGATGCTACCGTTCTTTGGTGATATA 1197
Query 1201 AACGCGGTGGTAGGAGCGTTTGGGTTTATCCCACTCGATTTCGTGCTGCCAATGCTTCTA 1260
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AACGCTGTGGTAGGAGCGTTTGGGTTTATCCCACTCGATTTCGTGCTGCCAATGCTTCTT 1257
Query 1261 TACAACATGACCTATAAGCCAACCAGACGGAGCTTCACGTATTGGATAAACATGACGATA 1320
||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 1258 TACAACATGACCTATAAGCCAACGAAACGGAGCTTCACATATTGGATAAACATGACGATA 1317
Query 1321 ATGGTTGTGTTCACTTGTGCAGGACTCATGGGAGCTTTCTCCTCCATTAGGAAACTTGTT 1380
|||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||||
Sbjct 1318 ATGGTTGTGTTCACTTGTACGGGAGTCCTGGGAGCTTTCTCCTCCATTAGGAAACTTGTT 1377
Query 1381 CTTGATGCTAATAAGTTCAAGTTGTTTAGCAGTGAAGTTGTTGATTAGATGGTTTTGATA 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1378 CTTGATGCTAATAAGTTCAAGTTGTTTAGCAGTGAAGTTGTTGATTAGATGGTTATGATA 1437
Query 1441 GTGTGATAAAAACATAAACAATACTTGTTTTGTGG-TT------ACACTTGTACATGAAT 1493
|| || ||||| |||| |||| ||||||||||||| || ||||||||||||||||
Sbjct 1438 GTATGGTAAAA-CATAGACAACACTTGTTTTGTGGGTTTTTTTTACACTTGTACATGAAT 1496
Query 1494 TTCTCGAGTTGATTCATTATCACACAAAATGC 1525
|| | |||| ||||||||||||||||||||||
Sbjct 1497 TTTTTGAGTCGATTCATTATCACACAAAATGC 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5