BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41810.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947531 jgi|Araly1|947531|scaffold_703760.1 1386 0.0
> Ahg947531 jgi|Araly1|947531|scaffold_703760.1
Length=917
Score = 1386 bits (750), Expect = 0.0
Identities = 865/919 (94%), Gaps = 13/919 (1%)
Strand=Plus/Plus
Query 216 TTTGGTACGAAAATACAAAGATGGAGATCAAAGTCAAAGCAAAAGATGTAGAGTCGACAA 275
||||||||||||||| |||||||||||||||||||||| |||||| |||||||| || |
Sbjct 1 TTTGGTACGAAAATATAAAGATGGAGATCAAAGTCAAACCAAAAGCCGTAGAGTCTACGA 60
Query 276 TGATGTCAACTAAAGAGGAGGATGAGATCAAGAAGATGAAAGAGTGTGTGGTGA-T--TC 332
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 61 TGATGGCAACTAAAGAGGAGGATGAGATCAAGAAGATGAAAGAGTGTGTGGTGATTGGTC 120
Query 333 AGAAGGCAGATGAGGAGGTTACTAAAGGACAAGAAACTATGAAGATTTTGGATGGTTCAA 392
| ||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||
Sbjct 121 AAAAGGCAGATGAGGAGGTTAGTAGAGGACAAGAAACTATGAAGATCTTGGAGGGTTCAC 180
Query 393 GACAAAACCAAGATGAAACAAGACAAGCTGATTCTAAGAATATTGACTCACCA---TCAT 449
||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||| ||||
Sbjct 181 GACAAAACCAAAATGAAACAAAACAAGATGATTTTAAGAATATTGACTCACCATCGTCAT 240
Query 450 CATCATCACTTGAGATGAAGAAGAAGTTGGAAATTGACCaaaaatttacgagtcaaaacg 509
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 241 CATCATCACTTGAGATGAAGAAGAAGGTGGAAATTGACAAAAAATTTACGAGTCATAACG 300
Query 510 aagaaaacaccaaaaaggaagaggagaagaagaaagagaC-CA--ACAATAACAATCTTT 566
|||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 301 AAGAAAACACCAAAAAGGAAGAGGAGAAGAAGAAAGAGACTAATTACAATAATAATCTTT 360
Query 567 CTAACATGAAGCATAAGAAGACGAGTTCACACGTATGGGACTGTGGGAGCACTCTCTACG 626
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 361 CTAACATGAAGCATAAGAAGACAAGTCCACACGTATGGGACTGTGGGAGCACTCTCTACG 420
Query 627 ACTCGTTCGAGCTCAACTCGTTCAAACGTCAACTCGACTCAGCCATCTCTGCTTCCTCCG 686
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 ACTCGTTCGAGCTAAACTCGTTCAAACGTCAACTCGACTCAGCCATCTCTGCTTCTTCCG 480
Query 687 CCAGAACTATGTCCATGTCTCACCTCCCTGACCGCCGTATCCCTTCTCTCAGCTCACTTT 746
|||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 481 CCAGAACTATGTCCATGTCTCACCTCCCCGACCGCCGTGTACCTTCTCTCAGCTCACTTT 540
Query 747 CGCCGGAGTActctcctcctcttcctcctccaccgacaacttcttcttcctcctcctccG 806
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 CGCCGGAGTATTCTCCCCCTCTTCCTCCTCCACCGACAACTTCTTCTTCCTCCTCCGCCG 600
Query 807 GTGGAAAGAAACACTCGAACAAGATCTCTCGTTCTCTACAGAGATTCTTGAAGTCAATGT 866
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 GTGGCAAGAAACACTCGAACAAGATCTCTCGTTCTCTACAGAGATTCTTGAAGTCAGTGT 660
Query 867 TCAAACCTAAACAGCACCAAAGCTTAACCACTCCTTCTTCGCCGGTCTACAAGGCGGTGG 926
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 TCAAACCTAAACAACACCAAAGCTTAAGCACTCCTTCTTCGCCGGTCTACAAGGCGGTGG 720
Query 927 GTCACGGCGGTGGCGATAAAGATCGATACTACGTCGTTTACGACAA-ATCGGGTTCGTTG 985
||||||||||||||||||||||| |||||||||| ||||| ||||| | |||||||||||
Sbjct 721 GTCACGGCGGTGGCGATAAAGATAGATACTACGTTGTTTATGACAAGA-CGGGTTCGTTG 779
Query 986 ACAACTATTCCAGAGTCAACGGAGAAAGAAGTGAGCCCCGAGATCAACTCTCTTGTTAGG 1045
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 ACAACTATTCCAGAGTCAACGGAGAAGGAAGTGAGCCCCGAGATCAACTCTCTTGTTAGG 839
Query 1046 AAGACCGTGTCCGAGAGATTCCCGGCGAGTAGAGTCGTTGGTATTTCATGTGCATGATTA 1105
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 AAGACCGTGTCCGAGAGATTCCCGGCGAGTCGAGTCGTTGGTATTTCATGTGCATGATTA 899
Query 1106 TAATATTA-ATCTAAGTCG 1123
|||||| | ||||||||||
Sbjct 900 TAATAT-ACATCTAAGTCG 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5