BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41830.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891476 jgi|Araly1|891476|Al_scaffold_0007_3462 894 0.0
Ahg891475 jgi|Araly1|891475|Al_scaffold_0007_3461 398 7e-110
> Ahg891476 jgi|Araly1|891476|Al_scaffold_0007_3462
Length=1167
Score = 894 bits (484), Expect = 0.0
Identities = 678/770 (88%), Gaps = 19/770 (2%)
Strand=Plus/Plus
Query 63 GAGAAAGGGTTCTGAAAGTTTTATGCTTTTCGTGGGTAGTGTATTGACTTTGCAAGCGGA 122
||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 3 GAGAAAGGGTTCTGAAAGTTTTATGCTTTTCGTGGATGGTGTATTGGCTTTGCAAGCGGA 62
Query 123 AGCGAATGCTACGTTGAACAGATT-CTACGTTAAGTGTGAAGGTGTTGATCAAAACTCGG 181
|| ||||||| ||||||||||||| | ||||||||||| ||| |||||||||||||| ||
Sbjct 63 AGAGAATGCTCCGTTGAACAGATTTC-ACGTTAAGTGTCAAGATGTTGATCAAAACTGGG 121
Query 182 TGCTTGAATGGATACCTAAAGTGTTGAAACGTGGTGTGTTAGATATTGATCTACATATCC 241
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 122 TGCTTGAATGGATACCCAAAGTATTGAAACGTGGTGTGTTAGATATTGATCTACACATGC 181
Query 242 CGTCAT-C---TCGCGGTTTTGGTTCCAA-CTCGACTTTTTATCCTCTGCCTTCAGAGAT 296
| | || | |||| |||| || |||| |||| ||||||||||||||||||||||||
Sbjct 182 CAT-ATTCGCCTCGCCATTTTCGT-CCAAACTCGGTTTTTTATCCTCTGCCTTCAGAGAT 239
Query 297 CTTTGTGAGCAAGACATTGGTTAGGCTGAAGATACAGTTTCAGGATGGTGTCAACG-TTA 355
|||| |||||||| ||||||||||||||||||||| ||| |||||| |||||| | ||
Sbjct 240 CTTTACGAGCAAGAAATTGGTTAGGCTGAAGATACACTTTGAGGATGCTGTCAA-GATTG 298
Query 356 ATGTGGAATGTGATGTTTCTCTTCC-AATGCTTAAGACTCTCCATCTTGATTATGTTAAG 414
|||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 299 ATGTGGAAGGTGATGTTTCTCTTCCGAA-GCTTAAGACTCTCCATCTTGATTATGTTAAG 357
Query 415 ATGGATACTAGAATGTTTCAGAAACTTCTTTCTGGCTGTCACATGCTCAAAGAATTATTG 474
| ||||| ||||||||||| || ||||||||||| |||||| |||| |||||||||||
Sbjct 358 CTAGATACCAGAATGTTTCACAAGCTTCTTTCTGGTTGTCACGCGCTCGAAGAATTATTG 417
Query 475 CTGATGAATTTGATATGGGAGGAGTCTTCAGAACCTGAACCTTGCT-ACGTAACCGTGTC 533
||| | |||||||||||||| ||||||||| ||||||||||||||| | || ||||||||
Sbjct 418 CTGTTTAATTTGATATGGGAAGAGTCTTCAAAACCTGAACCTTGCTTA-GTGACCGTGTC 476
Query 534 TGTCCCAACTCTGAAGATACTAAAATTTTCTCGTTTTGAAAATTTT-GTGAAGGCTAAAG 592
||||||||| || |||||||| || ||||||||||||||||||||| || |||| || ||
Sbjct 477 TGTCCCAACACTCAAGATACTCAAGTTTTCTCGTTTTGAAAATTTTAGT-AAGGTTACAG 535
Query 593 ATTTTAAACCGATCGTGTTATGGTCATTTGATATTCCAAATCTAGTCTACCTAGAGTACT 652
|||| ||||||||||| |||| |||||||||| |||| || || ||||||||||||||||
Sbjct 536 ATTTCAAACCGATCGTCTTATTGTCATTTGATTTTCCGAAGCTGGTCTACCTAGAGTACT 595
Query 653 TGGATACAATTGCGGACAAGTATCAACATGTGAGGTTTGACTCGCTTGTTGAAGCTCGTC 712
|||||||||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |
Sbjct 596 TGGATACAATTGCGGACATGTATCAACAAGTGAGTTTTGACTCACTTGTCGAAGCTAAAC 655
Query 713 TTGGTCTTTGTAAGA-CCTCTAAACAGATTAAAAATGACAATAATAATGTAACAAAGCTT 771
| ||||||||||||| || |||||||||||||| ||||||| |||||||||| ||||||
Sbjct 656 TCGGTCTTTGTAAGAACC-CTAAACAGATTAAAGATGACAAGAATAATGTAAGAAAGCTG 714
Query 772 TTCATGGGAATATGTAATGTCAAGATTCTCTACTTGACTGAAGATGCTCT 821
|||||||| ||||| |||||||| | |||| ||||||||| ||||| |||
Sbjct 715 TTCATGGGTATATGCAATGTCAAAACTCTCCACTTGACTGCAGATGGTCT 764
Score = 265 bits (143), Expect = 8e-70
Identities = 177/194 (91%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 1183 GAAGATGTAGCGGATCACATAAAGCAGGTCAAGCAATTCCTAGAGACAATGCCGGATCTT 1242
||| |||| |||||| | |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 949 GAAAATGTGGCGGATAAGATAATGCAGGTCAAGCAATTCCTAGAGACAATGCCGGAGCTC 1008
Query 1243 GAACAAGTGACATTGTACTACAATACACCACAGGATGAAGATGTGATGAAAGTGTTCAAG 1302
|||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct 1009 GAACAAGTGATGTTGTACTACAATACACCAGAGGTTGAAGATGTGATGAAAGTATTCAAG 1068
Query 1303 AAACTTAAGAAGCTTCGTAGAGTAGCTTCAGCCAAGTGTGAGGTCCAAATAATCTCTGAT 1362
||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1069 GAACTTCAGAAGCTTCCTAGAGTAGCTTCAGCCAAGTGTGAGATCCAAATAATCTCTGAT 1128
Query 1363 AACCTCAACTTATC 1376
||||||||| ||||
Sbjct 1129 AACCTCAACCTATC 1142
Score = 174 bits (94), Expect = 1e-42
Identities = 148/172 (86%), Gaps = 11/172 (6%)
Strand=Plus/Plus
Query 958 GTCTTCGAGGGACTGAATCATATATATAGG--AA-A-A-GA-AGAT-CTTGCGGGGACGA 1010
||||| | ||||||| |||||| ||||||| || | | || |||| ||| |||||||||
Sbjct 761 GTCTTAG-GGGACTGCATCATAGATATAGGAAAAGATATGAGAGATACTT-CGGGGACGA 818
Query 1011 GAATAGGCCGTGCATG-TGCAAAAATCTGGATAATATGAGGGTGAAGAAGGATATTGATG 1069
||| ||| ||||||| || ||| | |||||||||||||||||||||||||||||||||
Sbjct 819 GAACGGGCGGTGCATGTTG-AAACGTATGGATAATATGAGGGTGAAGAAGGATATTGATG 877
Query 1070 CTTGCCTATCATCAAGTTCGGTAAAGGTTATAAAGATATTGAACTTTGGTGA 1121
|||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 878 TTTGCCTATCATCAAGTCCGGTGAAGGTTATAAAGATATTGAATTTTGGTGA 929
> Ahg891475 jgi|Araly1|891475|Al_scaffold_0007_3461
Length=1074
Score = 398 bits (215), Expect = 7e-110
Identities = 393/478 (82%), Gaps = 15/478 (3%)
Strand=Plus/Plus
Query 120 GGAAGCGAATGCTACGTTGAACAGATTCTACGTTAAGTGTGAAG--G-TGTTGATCAAAA 176
|||||| || || ||||||| || ||| |||| |||||| ||| | |||||||||| |
Sbjct 3 GGAAGCTAAAACTCCGTTGAAGAGGTTCCACGTCAAGTGTAAAGATGTTGTTGATCAATA 62
Query 177 CTCGGTGCTTGAATGGATACCTAAAGTGTTGAAACGTGGTGTGTTAGATATTGATCTACA 236
| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 63 TTGGGTGCTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATCTACA 122
Query 237 TATCCCGTCATCTCGCGGTTTTGGTTCCAACTCGACTTTTTATCCTCTGCCTTC-AGAGA 295
||||| || ||||| |||||| || ||||||| |||||||||||||||||| | |||
Sbjct 123 CATCCCTTCGTCTCGTGGTTTTTGTGAAAACTCGAGTTTTTATCCTCTGCCTTCTA-AGA 181
Query 296 TCTTTGTGAGCAAGACATTGGTTAGGCTGAAGATACAGTTTCAGGATGGTGTCAACGTTA 355
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 182 TCTTTGAGAGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTCAGCATTC 241
Query 356 ATGTGGAATGTGATGTTTCTCTTCC-AATGCTTAAGACTCTCCATCTTGATTATGTTAAG 414
|||| || ||| |||||||||||| || ||||||||| ||||||||||||||| || |
Sbjct 242 ATGTTAAACGTGGTGTTTCTCTTCCCAA-GCTTAAGACCCTCCATCTTGATTATTTTCGG 300
Query 415 ATGGATACTAGAATGTTTCAGAAACTTCTTTCTGGCTGTCACATGCTCAAAGAATTATTG 474
|| ||||| || | |||| | || |||||||||| ||||||| |||| ||||| || ||
Sbjct 301 ATCGATACCAGTACGTTTAACAAGCTTCTTTCTGCCTGTCACGCGCTCGAAGAACTAGTG 360
Query 475 CTGATGAATTTGATATGGGAG-GAGTCTTCAGAACCTGAACCTTGCTAC-GTAACCGTGT 532
||| | ||| |||| |||| | || |||| |||| |||| ||||| | || || ||||
Sbjct 361 CTGGTTAATATGATGTGGG-GTGATTCTTTGGAACATGAAGCTTGCC-CTGTGACAGTGT 418
Query 533 CTGTCCCAACTCTGAAGATACTAAAATTTT-CTCGTTTTGAAAATTT-TGTGAAGGCT 588
|| ||||||| || |||| |||||| ||| | |||| |||| |||| | ||| ||||
Sbjct 419 CTATCCCAACCCTCAAGAGACTAAAGCTTTGC-CGTTCTGAAGATTTCTATGA-GGCT 474
Score = 228 bits (123), Expect = 1e-58
Identities = 169/192 (88%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 1193 CGGATCACATAAAGCAGGTCAAGCAATTCCTAGAGACAATGCCGGATCTTGAACAAGTGA 1252
|||| || ||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 857 CGGAGCAGATAGAGCATGTCAAGCACTTCCTAGAGACAATGCCGGATCTTGAACAAGTGA 916
Query 1253 CATTGTACTACAATACACCACAGGATGAAGATGTGATGAAAGTGTTCAAGAAACTTAAGA 1312
||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||
Sbjct 917 TATTGTACTACAATACACCAAAGGATGAAGATGTGATGAAAGTATTCAAGAAACTTGAGA 976
Query 1313 AGCTTCGTAGAGTAGCTTCAGCCAAGTGTGAGGTCCAAATAATCTCTGATAACCTCAACT 1372
|||||| | |||||||||||||||| || | |||||||||| | | ||||||| ||
Sbjct 977 AGCTTCCTGGAGTAGCTTCAGCCAATTGCAATGTCCAAATAAAAGCAAAGAACCTCAGCT 1036
Query 1373 TATCATTTACTT 1384
|||||| |||||
Sbjct 1037 TATCATCTACTT 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5