BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41840.1 Length=1623 Score E Sequences producing significant alignments: (Bits) Value Ahg891475 jgi|Araly1|891475|Al_scaffold_0007_3461 968 0.0 Ahg891473 jgi|Araly1|891473|Al_scaffold_0007_3459 252 7e-66 Ahg891500 jgi|Araly1|891500|Al_scaffold_0007_3486 178 1e-43 Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850 52.8 8e-06 > Ahg891475 jgi|Araly1|891475|Al_scaffold_0007_3461 Length=1074 Score = 968 bits (524), Expect = 0.0 Identities = 669/739 (91%), Gaps = 9/739 (1%) Strand=Plus/Plus Query 283 AAAACTCCGTTGAAGAGGTTTCACGTCAAGTGTGAAGATGTTGTTGATCAATCTTGGGTT 342 |||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| Sbjct 10 AAAACTCCGTTGAAGAGGTTCCACGTCAAGTGTAAAGATGTTGTTGATCAATATTGGGTG 69 Query 343 CTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATTTACACATCACT 402 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 70 CTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATCTACACATCCCT 129 Query 403 TCGTCTCGCAATTATTGTGAAAACTCAAGTTTTTATTCTCTGCCTTCTAAGATCTTTGTA 462 |||||||| || |||||||||||| ||||||||| ||||||||||||||||||||| | Sbjct 130 TCGTCTCGTGGTTTTTGTGAAAACTCGAGTTTTTATCCTCTGCCTTCTAAGATCTTTG-A 188 Query 463 -AGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTCCAT-ATTGATGTGG 520 ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| Sbjct 189 GAGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTC-AGCATTCATGTTA 247 Query 521 AAGGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCATCTTGATTATTTTAAGATAGAAA 580 || ||||||||||||||||||||||||||||||||||||||||||||||| ||| || | Sbjct 248 AACGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCATCTTGATTATTTTCGGATCGATA 307 Query 581 CGAGTATGCTTAACAAGCTTCTTTCTGGCTGTCACGCGCTCGAAGAGTTGGTGCTGGCTA 640 | |||| | |||||||||||||||||| |||||||||||||||||| | ||||||| || Sbjct 308 CCAGTACGTTTAACAAGCTTCTTTCTGCCTGTCACGCGCTCGAAGAACTAGTGCTGGTTA 367 Query 641 ATTTGATGTGGGCTGATTCTTCAGAAGATGAAGCTTGCCATGTGTCAGTGTCTATCCCAA 700 || ||||||||| |||||||| ||| |||||||||||| |||| ||||||||||||||| Sbjct 368 ATATGATGTGGGGTGATTCTTTGGAACATGAAGCTTGCCCTGTGACAGTGTCTATCCCAA 427 Query 701 CCCTCAAGAGACTAAATTTTTGCCGTTCTGAAGATTTCTATGAGGGTGAGTTTCATTTTT 760 |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| | Sbjct 428 CCCTCAAGAGACTAAAGCTTTGCCGTTCTGAAGATTTCTATGAGGCTGAATTTCATGAGT 487 Query 761 ATGAAGACTATGATGAGGAGAACATTAACGAGGGAGTGTCATTGTCGTTTGATAATCCGA 820 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 488 ATGAAGACTATGATGAGGAGAACATTAACGCGGGAGTGTCATTGTCGTTTGATAACCCGA 547 Query 821 ATTTGGTTTACCTTGAATATTCTGATGTTATTGTGGACAAGTATAAACAAGTAAGTTTTG 880 ||||||| ||| ||||||||||||||| ||||||||||| || ||||||||| || |||| Sbjct 548 ATTTGGTCTACTTTGAATATTCTGATGCTATTGTGGACAGGTTTAAACAAGTGAGATTTG 607 Query 881 ACTCGCTTGTCGAAGCTAATCTTAGACTTCGAAAGACACCCGAT---CAGGA-TGAAACA 936 |||||||||||||||||||||| ||||||||||||||| | ||| ||| | | |||| Sbjct 608 ACTCGCTTGTCGAAGCTAATCTCAGACTTCGAAAGACAACTGATGATCAG-ACTAAAACT 666 Query 937 GACAAGGTTAATGTAACAAAGCTTCTCATGGGAATACACAATGTTAAGATCCTTTACTTG 996 |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 667 GACAAGATTAATGTAACAAAGCTTCTCATGGGAATACGCAATGTTAAGATCCTCTACTTG 726 Query 997 TCTGATGACACTCTTGAGG 1015 ||| ||||||||||||||| Sbjct 727 TCTAATGACACTCTTGAGG 745 Score = 335 bits (181), Expect = 7e-91 Identities = 205/217 (94%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1407 GGAGCAGATAGAGCATGTCAAGCACTTCCTAGAGACAATGCCGGTTCTTAAACAAGTGAT 1466 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 858 GGAGCAGATAGAGCATGTCAAGCACTTCCTAGAGACAATGCCGGATCTTGAACAAGTGAT 917 Query 1467 ATTGTACTACAATACACCAAAAGATGAAGATGTGATGAAAGTGTTCAAGAAACTTGAGAA 1526 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 918 ATTGTACTACAATACACCAAAGGATGAAGATGTGATGAAAGTATTCAAGAAACTTGAGAA 977 Query 1527 GCTTCCTCGAGTAGCGTCAGCTAATTGCAATGTCCAAATATCATCGAAGAACCTCAGCTT 1586 ||||||| ||||||| ||||| |||||||||||||||||| | | |||||||||||||| Sbjct 978 GCTTCCTGGAGTAGCTTCAGCCAATTGCAATGTCCAAATAAAAGCAAAGAACCTCAGCTT 1037 Query 1587 GTCATCTACTTCGACTAAACGAGGTACTCTTCTTTAG 1623 |||||||||||||||||||||||||||||||||||| Sbjct 1038 ATCATCTACTTCGACTAAACGAGGTACTCTTCTTTAG 1074 Score = 137 bits (74), Expect = 2e-31 Identities = 110/126 (87%), Gaps = 7/126 (6%) Strand=Plus/Plus Query 1148 TCTTCGAGGGGCTGCATCACAAGTATACAAAGAGATGTGGGGACAAGGACGGCTGCTTGT 1207 |||| ||||| ||||||||||| |||||| | |||||||||||||||||||| ||||||| Sbjct 738 TCTT-GAGGGACTGCATCACAAATATACAGATAGATGTGGGGACAAGGACGGATGCTTGT 796 Query 1208 GCAAATATGAGAATCATTGGGGGACGAAGAAGAAGAAGAATGTCCGTACTTGCTTATCAT 1267 ||||||||||||||||||||||| ||||| | || ||||| |||||||||||||| Sbjct 797 GCAAATATGAGAATCATTGGGGGGCGAAGTTG--GA----TGTCCATACTTGCTTATCAT 850 Query 1268 CAAGTC 1273 |||||| Sbjct 851 CAAGTC 856 > Ahg891473 jgi|Araly1|891473|Al_scaffold_0007_3459 Length=1197 Score = 252 bits (136), Expect = 7e-66 Identities = 365/470 (78%), Gaps = 38/470 (8%) Strand=Plus/Plus Query 26 TTGGTGTTTCTGGAGATAGAATCAGCGGTTTACCAGACGCACTCATTTGCCACATCTTAT 85 |||||| || | |||||| |||||||| ||||||||||||| | ||||| ||||| |||| Sbjct 23 TTGGTGGTTGTAGAGATATAATCAGCGATTTACCAGACGCAGTGATTTGTCACATATTAT 82 Query 86 CATTCCTTCCAACAAAAGAAGCTGCTTCAACTACTGTTCTTGCCAAAAGATGGAAGCCTT 145 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 83 CATTCCTTCCAACTAAAGAAGCTGCTTCAACTACCGTTCTTGCCAAAAGATGGAAGCCTT 142 Query 146 TGCTT-GCTTTTGTTCCAAATCTTAACTTTGATGACTCCATCTATTTCCATCCTCGA--G 202 ||||| | | | || || | |||| | ||||||||||| | | ||||||||||| | | Sbjct 143 TGCTTCGGTGT-GTACCCAGTCTTGAGTTTGATGACTCTTTGTGTTTCCATCCTCCAATG 201 Query 203 -CG-A-GAAGAAACAAGTATTCTAAAAGTTACGAAAGTTTTATGAGTTTCGTGGATAGTG 259 | | ||||||| || | | || | || ||| |||||||| | ||||||||| | | Sbjct 202 ACTTACGAAGAAAGGAGCA--CGAAT-GCTA-GAA-GTTTTATGCGGTTCGTGGATGGGG 256 Query 260 TATTGGCTTTGCAAGCGAAAACGAAAACTCCGTTGAAGAGGTTTCACGTCAAGTGTGAAG 319 | ||||||||||| ||| | || | || || || || ||| | ||| |||||| Sbjct 257 T---GGCTTTGCAAGGGAATGCTAAGA-TC-----AACAGATTCCACTTTAAGGGTGAAG 307 Query 320 ATGTTGTTGATCAA-TCTTGGGTTCTTGAA-TGGATACCCAAA-GTCTTGAAACGTGGTG 376 || | | |||||| | | |||| |||||| || ||||| ||| || ||||||||||||| Sbjct 308 ATATCATCGATCAAATGT-GGGTGCTTGAAATG-ATACC-AAATGTGTTGAAACGTGGTG 364 Query 377 TGTTAGATATTGATTTACACATCACTTCG-TCTCGCA-ATTATTGTGAAAACTCAA-GTT 433 | | |||| ||||| || ||||| ||||| | | | | | | || ||| ||| | ||| Sbjct 365 TATCAGATCTTGATCTAGACATCTCTTCGATTTGGGATAGT-TT-TGA---CTCGATGTT 419 Query 434 TTTATTC-TCTGCCTTCTAAGATCTTTGTAAGCAAGACATTGGTTAGGCT 482 || || | ||||||| | ||||||||||| ||| |||||||||||||||| Sbjct 420 TT-AT-CATCTGCCTCCAAAGATCTTTGTGAGCGAGACATTGGTTAGGCT 467 > Ahg891500 jgi|Araly1|891500|Al_scaffold_0007_3486 Length=1227 Score = 178 bits (96), Expect = 1e-43 Identities = 163/194 (84%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 1407 GGAGCAGATAGAGCATGTC-AAGCACTTCCTAGAGACA-ATGCCGGTTCTTAAACAAGTG 1464 ||| ||||||||||||||| || |||||| |||||| | |||||| |||| | |||||| Sbjct 1023 GGATCAGATAGAGCATGTCGAA-CACTTCATAGAGA-AGATGCCGAATCTTGAGCAAGTG 1080 Query 1465 ATATTGTACTACAATACACCAAAAGATGAAGA--TG-TGATGAAAGTGTTCAAGAAACTT 1521 |||||| ||||| ||||| |||| |||||||| || ||||||||||||||||||||||| Sbjct 1081 ATATTGCACTACTATACATCAAATGATGAAGATTTGATGATGAAAGTGTTCAAGAAACTT 1140 Query 1522 GAGAAGCTTCCTCGAGTAGCGTCAGCTAATTGCAATGTCCAAATA-TCATCGAAGAACCT 1580 ||||| ||||| ||||||| ||||| || ||||| ||||| || || ||| | ||||| Sbjct 1141 GAGAACCTTCCAAGAGTAGCTTCAGCCAACTGCAAAATCCAACTAATC-TCGGATAACCT 1199 Query 1581 CAGCTTGTCATCTA 1594 |||||| ||||||| Sbjct 1200 CAGCTTATCATCTA 1213 > Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850 Length=1569 Score = 52.8 bits (28), Expect = 8e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 688 GTGTCTATCCCAACCCTCAAGAGACTAA 715 |||||||||||||||||||||||||||| Sbjct 988 GTGTCTATCCCAACCCTCAAGAGACTAA 1015 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60830121265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5