BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41840.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891475 jgi|Araly1|891475|Al_scaffold_0007_3461 968 0.0
Ahg891473 jgi|Araly1|891473|Al_scaffold_0007_3459 252 7e-66
Ahg891500 jgi|Araly1|891500|Al_scaffold_0007_3486 178 1e-43
Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850 52.8 8e-06
> Ahg891475 jgi|Araly1|891475|Al_scaffold_0007_3461
Length=1074
Score = 968 bits (524), Expect = 0.0
Identities = 669/739 (91%), Gaps = 9/739 (1%)
Strand=Plus/Plus
Query 283 AAAACTCCGTTGAAGAGGTTTCACGTCAAGTGTGAAGATGTTGTTGATCAATCTTGGGTT 342
|||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 10 AAAACTCCGTTGAAGAGGTTCCACGTCAAGTGTAAAGATGTTGTTGATCAATATTGGGTG 69
Query 343 CTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATTTACACATCACT 402
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 70 CTTGAATGGATACCCAAAGTCTTGAAACGTGGTGTGTTAGATATTGATCTACACATCCCT 129
Query 403 TCGTCTCGCAATTATTGTGAAAACTCAAGTTTTTATTCTCTGCCTTCTAAGATCTTTGTA 462
|||||||| || |||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct 130 TCGTCTCGTGGTTTTTGTGAAAACTCGAGTTTTTATCCTCTGCCTTCTAAGATCTTTG-A 188
Query 463 -AGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTCCAT-ATTGATGTGG 520
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 189 GAGCAAGACATTGGTTAGGCTCAAGATACAGTTTCAGGATGGTGTC-AGCATTCATGTTA 247
Query 521 AAGGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCATCTTGATTATTTTAAGATAGAAA 580
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 248 AACGTGGTGTTTCTCTTCCCAAGCTTAAGACCCTCCATCTTGATTATTTTCGGATCGATA 307
Query 581 CGAGTATGCTTAACAAGCTTCTTTCTGGCTGTCACGCGCTCGAAGAGTTGGTGCTGGCTA 640
| |||| | |||||||||||||||||| |||||||||||||||||| | ||||||| ||
Sbjct 308 CCAGTACGTTTAACAAGCTTCTTTCTGCCTGTCACGCGCTCGAAGAACTAGTGCTGGTTA 367
Query 641 ATTTGATGTGGGCTGATTCTTCAGAAGATGAAGCTTGCCATGTGTCAGTGTCTATCCCAA 700
|| ||||||||| |||||||| ||| |||||||||||| |||| |||||||||||||||
Sbjct 368 ATATGATGTGGGGTGATTCTTTGGAACATGAAGCTTGCCCTGTGACAGTGTCTATCCCAA 427
Query 701 CCCTCAAGAGACTAAATTTTTGCCGTTCTGAAGATTTCTATGAGGGTGAGTTTCATTTTT 760
|||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |
Sbjct 428 CCCTCAAGAGACTAAAGCTTTGCCGTTCTGAAGATTTCTATGAGGCTGAATTTCATGAGT 487
Query 761 ATGAAGACTATGATGAGGAGAACATTAACGAGGGAGTGTCATTGTCGTTTGATAATCCGA 820
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 488 ATGAAGACTATGATGAGGAGAACATTAACGCGGGAGTGTCATTGTCGTTTGATAACCCGA 547
Query 821 ATTTGGTTTACCTTGAATATTCTGATGTTATTGTGGACAAGTATAAACAAGTAAGTTTTG 880
||||||| ||| ||||||||||||||| ||||||||||| || ||||||||| || ||||
Sbjct 548 ATTTGGTCTACTTTGAATATTCTGATGCTATTGTGGACAGGTTTAAACAAGTGAGATTTG 607
Query 881 ACTCGCTTGTCGAAGCTAATCTTAGACTTCGAAAGACACCCGAT---CAGGA-TGAAACA 936
|||||||||||||||||||||| ||||||||||||||| | ||| ||| | | ||||
Sbjct 608 ACTCGCTTGTCGAAGCTAATCTCAGACTTCGAAAGACAACTGATGATCAG-ACTAAAACT 666
Query 937 GACAAGGTTAATGTAACAAAGCTTCTCATGGGAATACACAATGTTAAGATCCTTTACTTG 996
|||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 667 GACAAGATTAATGTAACAAAGCTTCTCATGGGAATACGCAATGTTAAGATCCTCTACTTG 726
Query 997 TCTGATGACACTCTTGAGG 1015
||| |||||||||||||||
Sbjct 727 TCTAATGACACTCTTGAGG 745
Score = 335 bits (181), Expect = 7e-91
Identities = 205/217 (94%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1407 GGAGCAGATAGAGCATGTCAAGCACTTCCTAGAGACAATGCCGGTTCTTAAACAAGTGAT 1466
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 858 GGAGCAGATAGAGCATGTCAAGCACTTCCTAGAGACAATGCCGGATCTTGAACAAGTGAT 917
Query 1467 ATTGTACTACAATACACCAAAAGATGAAGATGTGATGAAAGTGTTCAAGAAACTTGAGAA 1526
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 918 ATTGTACTACAATACACCAAAGGATGAAGATGTGATGAAAGTATTCAAGAAACTTGAGAA 977
Query 1527 GCTTCCTCGAGTAGCGTCAGCTAATTGCAATGTCCAAATATCATCGAAGAACCTCAGCTT 1586
||||||| ||||||| ||||| |||||||||||||||||| | | ||||||||||||||
Sbjct 978 GCTTCCTGGAGTAGCTTCAGCCAATTGCAATGTCCAAATAAAAGCAAAGAACCTCAGCTT 1037
Query 1587 GTCATCTACTTCGACTAAACGAGGTACTCTTCTTTAG 1623
||||||||||||||||||||||||||||||||||||
Sbjct 1038 ATCATCTACTTCGACTAAACGAGGTACTCTTCTTTAG 1074
Score = 137 bits (74), Expect = 2e-31
Identities = 110/126 (87%), Gaps = 7/126 (6%)
Strand=Plus/Plus
Query 1148 TCTTCGAGGGGCTGCATCACAAGTATACAAAGAGATGTGGGGACAAGGACGGCTGCTTGT 1207
|||| ||||| ||||||||||| |||||| | |||||||||||||||||||| |||||||
Sbjct 738 TCTT-GAGGGACTGCATCACAAATATACAGATAGATGTGGGGACAAGGACGGATGCTTGT 796
Query 1208 GCAAATATGAGAATCATTGGGGGACGAAGAAGAAGAAGAATGTCCGTACTTGCTTATCAT 1267
||||||||||||||||||||||| ||||| | || ||||| ||||||||||||||
Sbjct 797 GCAAATATGAGAATCATTGGGGGGCGAAGTTG--GA----TGTCCATACTTGCTTATCAT 850
Query 1268 CAAGTC 1273
||||||
Sbjct 851 CAAGTC 856
> Ahg891473 jgi|Araly1|891473|Al_scaffold_0007_3459
Length=1197
Score = 252 bits (136), Expect = 7e-66
Identities = 365/470 (78%), Gaps = 38/470 (8%)
Strand=Plus/Plus
Query 26 TTGGTGTTTCTGGAGATAGAATCAGCGGTTTACCAGACGCACTCATTTGCCACATCTTAT 85
|||||| || | |||||| |||||||| ||||||||||||| | ||||| ||||| ||||
Sbjct 23 TTGGTGGTTGTAGAGATATAATCAGCGATTTACCAGACGCAGTGATTTGTCACATATTAT 82
Query 86 CATTCCTTCCAACAAAAGAAGCTGCTTCAACTACTGTTCTTGCCAAAAGATGGAAGCCTT 145
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 83 CATTCCTTCCAACTAAAGAAGCTGCTTCAACTACCGTTCTTGCCAAAAGATGGAAGCCTT 142
Query 146 TGCTT-GCTTTTGTTCCAAATCTTAACTTTGATGACTCCATCTATTTCCATCCTCGA--G 202
||||| | | | || || | |||| | ||||||||||| | | ||||||||||| | |
Sbjct 143 TGCTTCGGTGT-GTACCCAGTCTTGAGTTTGATGACTCTTTGTGTTTCCATCCTCCAATG 201
Query 203 -CG-A-GAAGAAACAAGTATTCTAAAAGTTACGAAAGTTTTATGAGTTTCGTGGATAGTG 259
| | ||||||| || | | || | || ||| |||||||| | ||||||||| | |
Sbjct 202 ACTTACGAAGAAAGGAGCA--CGAAT-GCTA-GAA-GTTTTATGCGGTTCGTGGATGGGG 256
Query 260 TATTGGCTTTGCAAGCGAAAACGAAAACTCCGTTGAAGAGGTTTCACGTCAAGTGTGAAG 319
| ||||||||||| ||| | || | || || || || ||| | ||| ||||||
Sbjct 257 T---GGCTTTGCAAGGGAATGCTAAGA-TC-----AACAGATTCCACTTTAAGGGTGAAG 307
Query 320 ATGTTGTTGATCAA-TCTTGGGTTCTTGAA-TGGATACCCAAA-GTCTTGAAACGTGGTG 376
|| | | |||||| | | |||| |||||| || ||||| ||| || |||||||||||||
Sbjct 308 ATATCATCGATCAAATGT-GGGTGCTTGAAATG-ATACC-AAATGTGTTGAAACGTGGTG 364
Query 377 TGTTAGATATTGATTTACACATCACTTCG-TCTCGCA-ATTATTGTGAAAACTCAA-GTT 433
| | |||| ||||| || ||||| ||||| | | | | | | || ||| ||| | |||
Sbjct 365 TATCAGATCTTGATCTAGACATCTCTTCGATTTGGGATAGT-TT-TGA---CTCGATGTT 419
Query 434 TTTATTC-TCTGCCTTCTAAGATCTTTGTAAGCAAGACATTGGTTAGGCT 482
|| || | ||||||| | ||||||||||| ||| ||||||||||||||||
Sbjct 420 TT-AT-CATCTGCCTCCAAAGATCTTTGTGAGCGAGACATTGGTTAGGCT 467
> Ahg891500 jgi|Araly1|891500|Al_scaffold_0007_3486
Length=1227
Score = 178 bits (96), Expect = 1e-43
Identities = 163/194 (84%), Gaps = 9/194 (5%)
Strand=Plus/Plus
Query 1407 GGAGCAGATAGAGCATGTC-AAGCACTTCCTAGAGACA-ATGCCGGTTCTTAAACAAGTG 1464
||| ||||||||||||||| || |||||| |||||| | |||||| |||| | ||||||
Sbjct 1023 GGATCAGATAGAGCATGTCGAA-CACTTCATAGAGA-AGATGCCGAATCTTGAGCAAGTG 1080
Query 1465 ATATTGTACTACAATACACCAAAAGATGAAGA--TG-TGATGAAAGTGTTCAAGAAACTT 1521
|||||| ||||| ||||| |||| |||||||| || |||||||||||||||||||||||
Sbjct 1081 ATATTGCACTACTATACATCAAATGATGAAGATTTGATGATGAAAGTGTTCAAGAAACTT 1140
Query 1522 GAGAAGCTTCCTCGAGTAGCGTCAGCTAATTGCAATGTCCAAATA-TCATCGAAGAACCT 1580
||||| ||||| ||||||| ||||| || ||||| ||||| || || ||| | |||||
Sbjct 1141 GAGAACCTTCCAAGAGTAGCTTCAGCCAACTGCAAAATCCAACTAATC-TCGGATAACCT 1199
Query 1581 CAGCTTGTCATCTA 1594
|||||| |||||||
Sbjct 1200 CAGCTTATCATCTA 1213
> Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850
Length=1569
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 688 GTGTCTATCCCAACCCTCAAGAGACTAA 715
||||||||||||||||||||||||||||
Sbjct 988 GTGTCTATCCCAACCCTCAAGAGACTAA 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5