BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41870.1
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493797 jgi|Araly1|493797|fgenesh2_kg.7__3230__AT5G41870.1 2141 0.0
> Ahg493797 jgi|Araly1|493797|fgenesh2_kg.7__3230__AT5G41870.1
Length=1454
Score = 2141 bits (1159), Expect = 0.0
Identities = 1322/1402 (94%), Gaps = 6/1402 (0%)
Strand=Plus/Plus
Query 79 tctcAGATATGAAGATTTCTCAAGCTCCGATCTCTGTTTTCGTACTCTTCTTGCTCTCCA 138
|||| ||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 56 TCTCCGATATGACGCTTTCTCGAGCTCCGATCTCTGTTTTCGTACTCTTCTTGCTCTCCA 115
Query 139 CTGTTTTGCCTCACCATCTCTCACTGGGAGCTCCGATTACATGCTCTGGTATAGTTCCAA 198
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 116 CTGTTTTGCCTCACCATCTCTCGCTCGGAGCTCCGATTACATGCTCTGGTATAGTTCCGA 175
Query 199 TGAAACACAGAAACGAGATGCTATCAATTTCGGATTTTGGAGCTGTCGGTGACGGCAAGA 258
|||||||||| | |||||||||||| |||| ||||||||||||||||||||||| ||||
Sbjct 176 TGAAACACAGGACCGAGATGCTATCGATTTTTGATTTTGGAGCTGTCGGTGACGGAAAGA 235
Query 259 CCTTGAACACCAAAGCATTCAATTCAGCTATTGATCGGATACGAAACTCCAATAACAGTA 318
|||| |||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 236 CCTTAAACACCAACGCATTCAATACAGCGATTGATCGGATACGAAACTCCAACAACAGTA 295
Query 319 ACGAAGGAACTCTTCTTTATGTGCCTCGTGGTGTGTATTTGACTCAAAGCTTCAATCTTA 378
| ||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||
Sbjct 296 GCCAAGGAACGCTTCTTCATGTGCCTCGTGGTGTCTATTTGACTCATAGCTTCAATCTTA 355
Query 379 CGAGTCACATGACT-TTATACCTCGCCGATGGTGCTGTTATTAAAGCCGTTCAGGATACG 437
| ||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 356 CTAGTCATATGACTCTT-TACCTCGCCGATGGTGCGGTTATTAAAGCCGTTCAGGATACG 414
Query 438 GAGAAATGGCCTTTGACCGATCCTTTGCCGTCTTATGGAAGAGGACGGGAGCATCCTGGA 497
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 415 GAGAAATGGCCTTTGACCGATCCTTTGCCGTCTTATGGAAGAGGACGGGAGCGCCCTGGA 474
Query 498 CGAAGATATATCAGCTTTATTCACGGAGACGGACTCAACGACGTTGTTATTACAGGCAGA 557
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 475 CGAAGATATATCAGCTTTATTCATGGAGATGGACTCAATGACGTTGTTATTACAGGCAGA 534
Query 558 AATGGGACGATTGATGGCCAAGGAGAACCTTGGTGGAACATGTGGAGACATGGAACTCTA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AATGGGACGATTGATGGCCAAGGAGAACCTTGGTGGAACATGTGGAGACATGGAACTCTA 594
Query 618 AAGTTTACCAGACCTGGTCTCATCGAATTCAACAACTCAACAAACATCCTCGTCTCTCAT 677
|||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 595 AAGTTTACTAGACCGGGTCTCATCGAATTCAAGAACTCAACAAACATCGTCGTCTCTCAC 654
Query 678 GTTGTTCTTCAGAACTCCCCTTTCTGGACACTTCATCCGGTTTATTGCAGTAATGTTGTT 737
|||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 655 GTTGTTCTTCAGAACTCCGCTTTCTGGACACTTCATCCTGTTTATTGCAGTGATGTTGTG 714
Query 738 GTTCATCATGTTACTATCCTCGCTCCAACTGATTCGTACAACACCGATGGAATTGATCCA 797
|||||||| ||||| || ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 715 GTTCATCACGTTACCATTCTCGCTCCAACTGATTCCTTCAACACCGATGGAATTGATCCA 774
Query 798 GATTCAAGCTCTAACGTCTGTATAGAAGACTCCTACATATCTACTGGTGACGACCTTGTT 857
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 775 GATTCAAGCTCTAACGTCTGTATAGAAGATTCCTACATATCTACTGGTGATGACCTTGTT 834
Query 858 GCGGTGAAGAGCGGTTGGGACGAGTATGGCATTGCATACAACCGTCCAAGCCGTGACATC 917
||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 835 GCGGTAAAAAGCGGTTGGGATGAGTATGGCATTGCCTACAACCGTCCAAGCCGTGACATC 894
Query 918 ACCATCCGCCGCATCACTGGATCTTCCCCATTTGCTGGAATAGCCATCGGAAGCGAAACT 977
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 895 ACCATCCGCCGCATCACTGGATCTTCCCCTTTTGCTGGAATAGCCATCGGAAGCGAAACC 954
Query 978 TCTGGCGGAATCCAAAATGTAACAGTTGAAAACATCACTCTCTACAATTCTGGTATCGGC 1037
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 955 TCTGGCGGAATCCAAAATGTAACAGTTGAAAACATCACTCTATACAATTCTGGTATCGGC 1014
Query 1038 ATCCACATCAAGACAAACATTGGCCGAGGAGGAAGCATACAGGGGATAACAATCTCCGGG 1097
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1015 ATCCACATCAAGACAAACATTGGCCGAGGAGGAAGCATCCAAGGGATAACAATCTCCGGG 1074
Query 1098 GTTTACCTAGAAAAAGTCCGGACCGGGATTAAGATCTCTGGCGACACCGGAGATCATCCA 1157
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1075 GTTTACCTGGAAAAAGTCCGGACCGGGATTAAGATCTCTGGCGACACCGGAGATCACCCA 1134
Query 1158 GACGATAAATTCAACACATCCGCTCTTCCCATAGTAAGAGGCATAACGATCAAGAACGTA 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GACGATAAATTCAACACATCCGCTCTTCCCATAGTAAGAGGCATAACGATCAAGAACGTA 1194
Query 1218 TGGGGCATCAAAGTCGAGCGTGCTGGCATGGTTCAGGGATTAAAAGATTCACCTTTCACC 1277
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1195 TGGGGAATCAAAGTCGAGCGTGCTGGTATGGTTCAGGGATTAAAAGATTCACCTTTCACT 1254
Query 1278 AATCTCTGCTTCTCCAATGTTACACTGACCGGAACAAAAAGGT-CTCCAATATGGAAATG 1336
|||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 1255 AATCTCTGCTTCTCCAATGTTACACTCACCGGAACAAAAAG-TACTCCAATATGGAAATG 1313
Query 1337 CTCAGATGTCGTAGGAGCCGC-TGACAAGGTCAACCCCACACCTTGCCCTGAACTAAGCG 1395
||||||||||||||| ||||| | ||||||||||||||| ||||||||||| |||| |
Sbjct 1314 CTCAGATGTCGTAGGCGCCGCCTC-CAAGGTCAACCCCACGCCTTGCCCTGAGCTAACCA 1372
Query 1396 CAACCACACAACAAGGTGGTTCCTGTGAAAACCAATCCTAATTCTCCAAAGCTAAGAGAC 1455
|||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 1373 CAACCACACAACAAGGCGGTTCCTGCGAAAACCAATCCTAATACTCCAAAGATAAGAGAC 1432
Query 1456 TACATGTAGATTAATGTAAGTT 1477
|||||||||||||| |||||||
Sbjct 1433 TACATGTAGATTAACGTAAGTT 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57820991910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5