BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41880.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891469 jgi|Araly1|891469|Al_scaffold_0007_3455 1707 0.0
Ahg913929 jgi|Araly1|913929|Al_scaffold_0001_4183 763 0.0
Ahg908045 jgi|Araly1|908045|Al_scaffold_0002_1126 551 6e-156
Ahg912865 jgi|Araly1|912865|Al_scaffold_0001_3119 370 2e-101
Ahg912864 jgi|Araly1|912864|Al_scaffold_0001_3118 324 1e-87
> Ahg891469 jgi|Araly1|891469|Al_scaffold_0007_3455
Length=1209
Score = 1707 bits (924), Expect = 0.0
Identities = 1020/1066 (96%), Gaps = 8/1066 (1%)
Strand=Plus/Plus
Query 217 ACGATGGGAAACATCCTGGTTGTGATGAATATTACTTTGGTAGAAGAGAATTCTCGTTTA 276
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 104 ACGATGGGAAACATCCTGGTTGTGATGAATACTACTTTGGTAGAAGAGAATTCTCGTTTA 163
Query 277 CGCTTGAAAACGATGTTTATTTGCGGTATAAGTCTTTCAAGAATGCTTCACTTATGGAAG 336
|||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 164 CGCTTGAAAATGATGTTTATTTGCGGTATAAGTCTTTTAAGAATGCTTCAGTTATGGAAG 223
Query 337 CTGCTATCAAATCGAATTTTCCATACAAGATTGATATTGGTGCTGTGTATAGCGTTGATC 396
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 ATGCAATCAAATCGAATTTTCCATACAAGATTGATATTGGTGCTGTGTATAGCGTTGATC 283
Query 397 CGGATAAGAGACATGCATATGCTCAAAGTGGAACCAATTTGTTTACTCCAGTGGAGAGGG 456
| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 284 CAGATAAGAGACATGCTTATGCACATAGTGGAACCAATTTGTTTACTCCAGTGGAGAGGG 343
Query 457 AGTTAGTCTTTGATATTGATATAACAGATTATGATGATGTTAGATACTGTTGTTCGGGAG 516
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 344 AGTTAGTCTTTGATATTGATATAACAGATTATGATGATGTTAGATACTGTTGCTCGGGAG 403
Query 517 CCGATGTTTGCTCCAAATGCTGGCCTTTAATGACAGTTGCTATCAAAGTCATTGATACTT 576
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 CTGATGTTTGCTCCAAATGCTGGCCTTTAATGACAGTTGCTATCAAAGTCATTGATACTT 463
Query 577 CCTTAAGAGAGGATTTTGGTTTCAAACACATCCTCTGGGTCTTCAGTGGACGTCGTGGAG 636
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 464 CCTTAAGAGAGGATTTTGGTTTCAAACATATTCTCTGGGTCTTCAGTGGACGTCGTGGAG 523
Query 637 TTCACTGTTGGGTTTGTGATGCTAAAGCTCGAAGGTTGACTAATGAACAAAGATCAGCAG 696
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 524 TTCACTGTTGGGTTTGTGATGCTAAAGCTCGAAGGTTGACTAATGAGCAAAGATCAGCAG 583
Query 697 TTGCTGAATACTTTCGTGTTTATAAGGGAAATGAAAACAATGCAAAAAAGGTCGATCTGA 756
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 584 TTGCTGAATACTTCCGTGTTTATAAGGGAAATGAAAACAATGCAAAAAAAGTCGATCTTA 643
Query 757 TGGGTCATTCTCTTCATCCGTTTCTT--G--C--GAGATCATATGTGGACTTTATTAAGA 810
|||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||
Sbjct 644 TGGGTCATTCTCTTCATCCGTTTCTTGCGTACGGGAGATCATATGTGGACTTTCTTAAGA 703
Query 811 GTTTCTTTGAGGGTGAGTTACAAGCAACTCAAAGTATATTCTCAAGCAAAGA-AAAGTAT 869
|||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||| |||
Sbjct 704 ATTTCTTTGAGGGTGAGTTACAAGCAAATCAAAGTTTATTCTCAAGCGAAGATAAA-TAT 762
Query 870 GAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACCTCAGAGGAAAGTGG 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACCTCAGAGGAAAGTGG 822
Query 930 GAGAATTCTGCGAGATCATCTCTATCAGAAGAAGCCACCAGCCTTTTAAGGTGGGAACAA 989
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 823 GAGAATTCTGCGAGATCATCTCTATCAGAAGAAGCCACCAGCCGTTTAAGGTGGGAGCAG 882
Query 990 CTTAAGAAAGCTCTTCAATCGAAGAGAAACAAGGCTCTATCACTGCGGACGTGCGTAGAA 1049
||||| ||| | ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 883 CTTAAAAAAACGCTTCAATCGAAGAAAAACAAGGCTCTATCACTGCGGACATGCGTAGAA 942
Query 1050 GAAATTGTCTTCACCTTTACGTATCCTCGAATTGATTTGGAGGTTTCAAAACAAATGAAC 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GAAATTGTCTTCACCTTTACGTATCCTCGAATTGATTTGGAGGTTTCAAAACAAATGAAC 1002
Query 1110 CATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGGTCGTGTCTGTGTTCCTATT 1169
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1003 CATTTGCTTAAAGCACCCTTCTGCGTCCATCCCAAAACAGGTCGTGTATGTGTTCCTATT 1062
Query 1170 GACCCGAATAACTGTGATGAGTTTGATCCATTGGCAGTTCCAACTCTTTCACAGCTAATA 1229
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1063 GACCCGAATAACTGCGATGAGTTTGATCCATTGGCAGTTCCAACTCTTTCACAGTTAATT 1122
Query 1230 GAAGAAATCAATTCCGGTGGCCTCAGAATGGACGTGGATGATGATG 1275
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1123 GAAGAAATCAATTCCGGTGGCCTCAGAATGGATGTGGATGATGATG 1168
Score = 163 bits (88), Expect = 3e-39
Identities = 100/106 (94%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 63 ATGACGAGAGAGGAGACTGAAACCAGTGGAGAGGATATGATGATTGATGACCCAAAACCC 122
|||||||||||||||| ||||| || ||| || |||||||||||||||||||||||||||
Sbjct 1 ATGACGAGAGAGGAGATTGAAAACAATGGTGAAGATATGATGATTGATGACCCAAAACCC 60
Query 123 AAAATCGAAAACGATTTCAATGTTCATTACCTCCGAATTTACTACG 168
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 AAAATCGAAAACGATTTCAATGTTCATTACCTCCGGATTTACTACG 106
> Ahg913929 jgi|Araly1|913929|Al_scaffold_0001_4183
Length=597
Score = 763 bits (413), Expect = 0.0
Identities = 544/605 (90%), Gaps = 17/605 (3%)
Strand=Plus/Plus
Query 679 ATGAACAAAGATCAGCAGT-TGCTGAATACTTTCGTGTTTAT-AAGGGAAATGAAAACAA 736
||||||||||||||||||| | |||||||||| ||||||||| ||||||||||| ||||
Sbjct 1 ATGAACAAAGATCAGCAGTCT-CTGAATACTTCCGTGTTTATAAAGGGAAATGAGAACAG 59
Query 737 TGCAAAAAAGGTCGATCTGATGGGTCATTCTCTTCATCCGTTTCTTGCGAGATCATATGT 796
||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||| |||
Sbjct 60 TGCCAAAAATGTCGATCTGATGGGTCATTCTCATCAACCGTTTCTCGCGAGATCATGTGT 119
Query 797 GGACTTTATT-AAGAGTTTCTTTGAGGGTGAGTTACAAGCAACTCAAAGTATATTCTCAA 855
||||||| || |||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 120 GGACTTT-TTAAAGAATTTCTTTGAGGATGAGTTACATGCAACTCAAAGTATATTCTCAA 178
Query 856 GCAAAGAAAAGTATGAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACC 915
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 179 GCAAAGAAAAATATGAGAAGATACTTGGCATGATAACAGATGAAGATATTCAATCAGAGC 238
Query 916 TCAGAGGAAAGTGGGAGAATTCTGCGAGATCATCTCTATCAGAAGAAGCCACCAGCCTTT 975
| ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 TGAGAGGGGAGTGGAAGAATTCTGCGAGATCATCTCCATCAGAAGAAGCCACCAGCCTTT 298
Query 976 TAAGGTGGGAACAACTTAAGAAAGCTCTTCAATCGAAGAGA-AACAAGGCTCTATCACTG 1034
|||||||||| || ||||| || ||| | ||||| |||| | ||||||||||||||||||
Sbjct 299 TAAGGTGGGAGCAGCTTAA-AACGCT-T-CAATCAAAGA-ACAACAAGGCTCTATCACTG 354
Query 1035 CGGACGTGCGTAGAAGAAATTGTCTTCACCTTTACGTATCCTCGAATTGATTTGGAGGTT 1094
||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 355 CGGACATGCGTAGAAGAAATTGTCTTCAACTTTATATATCCTCGAATTGATTTGGAGGTC 414
Query 1095 TC-AAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGGTCG 1153
|| |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 415 TCCAAAA-AAATGAACCATTTGCTTAAGGCACCCTTCTGTGTCCATCCAAACACAGGTCG 473
Query 1154 TGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATT---GGCAGTTCC 1210
|||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||
Sbjct 474 TGTCTGTGTTCCTATTGATCCGAATAACTGCGATGAGTTTGATCCATTATTGGAAGTTCC 533
Query 1211 AACTCTTTCACAGCTAATAGAAGAAATCAATTCCGGTGGCCTCAGA-ATGGACGTGGATG 1269
||| ||||||||| | |||||||||||||| || | ||||||| | ||||| |||||||
Sbjct 534 AACACTTTCACAGATCATAGAAGAAATCAACTCAGCAGGCCTCA-ATATGGATGTGGATG 592
Query 1270 ATGAT 1274
|||||
Sbjct 593 ATGAT 597
> Ahg908045 jgi|Araly1|908045|Al_scaffold_0002_1126
Length=423
Score = 551 bits (298), Expect = 6e-156
Identities = 385/426 (90%), Gaps = 10/426 (2%)
Strand=Plus/Plus
Query 679 ATGAACAAAGATCAGCAGT-TGCTGAATACTTTCGTGTTTAT-AAGGGAAATGAAAACAA 736
||||||||||||||||||| | |||||||||| ||||||||| ||||||||||| ||||
Sbjct 1 ATGAACAAAGATCAGCAGTCT-CTGAATACTTCCGTGTTTATAAAGGGAAATGAGAACAG 59
Query 737 TGCAAAAAAGGTCGATCTGATGGGTCATTCTCTTCATCCGTTTCTTGCGAGATCATATGT 796
||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||| |||
Sbjct 60 TGCCAAAAATGTCGATCTGATGGGTCATTCTCATCAACCGTTTCTCGCGAGATCATGTGT 119
Query 797 GGACTTTATT-AAGAGTTTCTTTGAGGGTGAGTTACAAGCAACTCAAAGTATATTCTCAA 855
||||||| || |||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 120 GGACTTT-TTAAAGAATTTCTTTGAGGATGAGTTACATGCAACTCAAAGTATATTCTCAA 178
Query 856 GCAAAGAAAAGTATGAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACC 915
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 179 GCAAAGAAAAATATGAGAAGATACTTGGCATGATAACAGATGAAGATATTCAATCAGAGC 238
Query 916 TCAGAGGAAAGTGGGAGAATTCTGCGAGATCATCTCTATCAGAAGAAGCCACCAGCCTTT 975
| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 TGAGAGGGGAGTGGGAGAATTCTGCGAGATCATCTCCATCAGAAGAAGCCACCAGCCTTT 298
Query 976 TAAGGTGGGAACAACTTAAGAAAGCTCTTCAATCGAAGAGA-AACAAGGCTCTATCACTG 1034
|||||||||| || ||||| || ||| | ||||| |||| | ||||||||||||||||||
Sbjct 299 TAAGGTGGGAGCAGCTTAA-AACGCT-T-CAATCAAAGA-ACAACAAGGCTCTATCACTG 354
Query 1035 CGGACGTGCGTAGAAGAAATTGTCTTCACCTTTACGTATCCTCGAATTGATTTGGAGGTT 1094
||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 355 CGGACATGCGTAGAAGAAATTGTCTTCAACTTTATATATCCTCGAATTGATTTGGAGGTC 414
Query 1095 TCAAAA 1100
|| |||
Sbjct 415 TCCAAA 420
> Ahg912865 jgi|Araly1|912865|Al_scaffold_0001_3119
Length=282
Score = 370 bits (200), Expect = 2e-101
Identities = 255/281 (91%), Gaps = 5/281 (2%)
Strand=Plus/Plus
Query 679 ATGAACAAAGATCAGCAGT-TGCTGAATACTTTCGTGTTTAT-AAGGGAAATGAAAACAA 736
||||||||||||||||||| | |||||||||| ||||||||| ||||||||||| ||||
Sbjct 1 ATGAACAAAGATCAGCAGTCT-CTGAATACTTCCGTGTTTATAAAGGGAAATGAGAACAG 59
Query 737 TGCAAAAAAGGTCGATCTGATGGGTCATTCTCTTCATCCGTTTCTTGCGAGATCATATGT 796
||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||| |||
Sbjct 60 TGCCAAAAATGTCGATCTGATGGGTCATTCTCATCAACCGTTTCTCGCGAGATCATGTGT 119
Query 797 GGACTTTATT-AAGAGTTTCTTTGAGGGTGAGTTACAAGCAACTCAAAGTATATTCTCAA 855
||||||| || |||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 120 GGACTTT-TTAAAGAATTTCTTTGAGGATGAGTTACATGCAACTCAAAGTATATTCTCAA 178
Query 856 GCAAAGAAAAGTATGAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACC 915
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 179 GCAAAGAAAAATATGAGAAGATACTTGGCATGATAACAGATGAAGATATTCAATCAGAGC 238
Query 916 TCAGAGGAAAGTGGGAGAATTCTGCGAGATCATCTCTATCA 956
| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 239 TGAGAGGGGAGTGGGAGAATTCTGCGAGATCATCTCCATCA 279
> Ahg912864 jgi|Araly1|912864|Al_scaffold_0001_3118
Length=255
Score = 324 bits (175), Expect = 1e-87
Identities = 231/257 (90%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 1023 GCTCTATCACTGCGGACGTGCGTAGAAGAAATTGTCTTCACCTTTACGTATCCTCGAATT 1082
||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 GCTCTATCACTGCGGACATGCGTAGAAGAAATTGTCTTCAACTTTATATATCCTCGAATT 60
Query 1083 GATTTGGAGGT-TTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCC 1141
||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GATTTGGAGGTCTCCAAAA-AAATGAACCATTTGCTTAAGGCACCCTTCTGTGTCCATCC 119
Query 1142 AAAAACAGGTCGTGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATT 1201
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 120 AAACACAGGTCGTGTCTGTGTTCCTATTGATCCGAATAACTGCGATGAGTTTGATCCATT 179
Query 1202 ---GGCAGTTCCAACTCTTTCACAGCTAATAGAAGAAATCAATTCCGGTGGCCTCAGA-A 1257
|| ||||||||| ||||||||| | |||||||| ||||| || | ||||||| | |
Sbjct 180 ATTGGAAGTTCCAACACTTTCACAGATCATAGAAGAGATCAACTCAGCAGGCCTCA-ATA 238
Query 1258 TGGACGTGGATGATGAT 1274
|||| ||||||||||||
Sbjct 239 TGGATGTGGATGATGAT 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5