BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41890.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493795 jgi|Araly1|493795|fgenesh2_kg.7__3228__AT5G41890.1 1602 0.0
> Ahg493795 jgi|Araly1|493795|fgenesh2_kg.7__3228__AT5G41890.1
Length=1086
Score = 1602 bits (867), Expect = 0.0
Identities = 994/1056 (94%), Gaps = 6/1056 (1%)
Strand=Plus/Plus
Query 76 GCTGCTCAATCGTTCACAAACTTCATATTTGGAGACTCATTGGTAGATGTTGGAAACAAC 135
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 GCTGCTCAATCTTTCACAAACTTCATATTTGGAGACTCATTGGTAGATGTTGGAAACAAC 93
Query 136 AACTATATCTTCACATTGTCAAAAGCTGATTCTTCGCCTTATGGCATCGATTTTGCACCT 195
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 94 AATTATATCTTCACATTGTCGAAAGCCGATTCTTCGCCTTATGGCATCGATTTTGGACCT 153
Query 196 TCCAACGGCCAACCCACGGGAAGATTCACTAATGGTCGAACCATTTCCGATATTGTGGGT 255
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 154 TCCAATGGCCAACCCACGGGAAGATTCACTAATGGTCGAACCATTTCTGATATCGTGGGT 213
Query 256 GAAGCCTTAGGAGCAAAATCACCACCACCACCATATCTTGAACCAAACACTGAGGCTAAC 315
||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 214 GAAGCCTTAGGAGCAAAATCAGCACCACCTCCATATCTTGAACCAAACTCTGAGGCTAAC 273
Query 316 ACAATTCGCAATGGAATCAACTATGCTTCTGGTGCTGCTGGAATCTTGGACGACACTGGA 375
||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 274 ACATTTCTCAATGGAATCAACTATGCTTCTGGTGCGGCTGGAATCTTGGACGACACTGGA 333
Query 376 CTTCTGTTCATCGGGCGAGTTCCGCTGAGAGAACAAGTGAGTAATTTTGAGAAGAGTAGA 435
||| | || |||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 334 CTTTTTTTTATCGGGAGAGTTCCGCTAAGAGAACAAGTGAGTTATTTTGAGAAGAGTAGA 393
Query 436 GAATATATGGTAAGAGTGATTGGTGAAAATGGTACAAAAGAGATGTTGAAGAATGCAATG 495
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 394 GATTACATGGTAAGAGTGATTGGTGAAAATGGTACAAAAGAGATGTTGAAGAAGGCAATG 453
Query 496 TTCACAATCACAATTGGATCAAATGATATTTTGAATTATATTCAACCATCAATACCTTTC 555
|||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 454 TTCACAATGACAATTGGTTCAAATGATATATTGAATAATATTCAACCATCAATACCTTTT 513
Query 556 TTCTCTCAAGACAAGCTCCCCACTGATGTCCTACAAGATTCTATGGTCCTCCATTTAACC 615
|||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 514 TTCTCTCAAGACAAACTCCCCATTGATGTCCTACAAGATTCCATGGTCCTCCATTTAACC 573
Query 616 ACACATCTTAAGCGATTGCATCAGCTAGGAGGTAGGAAGTTCGTGGTGGTTGG-AGTAGG 674
|||||||| |||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 574 ACACATCTGAAGCGATTGCATCAGCTAGGAGCTAGGAAGTTCGTGGTGGTTGGGA-TAGG 632
Query 675 GCCACTCGGTTGCATACCCTTTGCTCGAGCGTTGAATTTAATACCAGCCGGAAAATGCTC 734
|||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 633 GCCACTTGGTTGCATACCGTTTGCTCGTGCCTTGAATTTAATACCAGCCGGAAAATGCTC 692
Query 735 CGAACAAGTCAACCAAGTAGTCCGAGGTTATAACATGAAGCTTATACACTCTCTTAAGAC 794
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 693 CGAACAAGTCAACCAAATAGTCCGAGGTTATAACATGAAGCTTAGACACTCTCTTAAGAC 752
Query 795 A-TTGAACAATGAGTTAAGATCCGAAGATTACAACACTACATTTGTCTACGCCAACTCTT 853
| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 753 ACTT-AACAATGAGTTAAGATCTGAAGATTACAACGCTACATTTGTCTACGCCAACTCTT 811
Query 854 ACGACCTATTCTTGAAACTAGTTTTGAACTATCAACTA-TTTGGCTTGAAGAACGCAGAC 912
||||||| ||||||||||| ||||| ||||||| || | ||||| ||| |||||||||||
Sbjct 812 ACGACCTCTTCTTGAAACTGGTTTTAAACTATCGAC-AGTTTGGTTTGGAGAACGCAGAC 870
Query 913 AAGCCGTGTTGTGGCGGCTACTTTCCACCGTTTGCATGCTTTAAGGGACCTAACCAGAAC 972
|||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||
Sbjct 871 AAGCCGTGTTGTGGCGGCTACTTTCCGCCGTTTACATGTTTTAAGGGACCGAACCAGAAC 930
Query 973 TCAAGCCAAGCAGCTTGTGAGGACAGGTCCAAGTTTGTCTTCTGGGACGCGTATCACCCA 1032
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 931 TCAAGCCAAGCGGCTTGTGAGGACCGGTCCAAGTTTGTCTTCTGGGACGCGTATCACCCA 990
Query 1033 ACCGAAGCTGCAAATCTCATTGTTGCCAAAGCACTTCTTGATGGTGACCAAACTGTGGCT 1092
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 ACCGAAGCTGCCAATCTCATTGTTGCCAAAGCACTTCTTGATGGTGACCAAACTGTGGCT 1050
Query 1093 ACCCCTTTCAACATCCGCTATCTTAACGATCTTTAA 1128
|| ||||||||||| |||||||||||||||||||||
Sbjct 1051 ACACCTTTCAACATTCGCTATCTTAACGATCTTTAA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5