BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41900.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891467 jgi|Araly1|891467|Al_scaffold_0007_3453 2366 0.0
Ahg358997 jgi|Araly1|358997|fgenesh1_pg.C_scaffold_9000037 361 1e-98
Ahg474084 jgi|Araly1|474084|fgenesh2_kg.1__4038__AT1G64670.1 172 6e-42
Ahg337911 jgi|Araly1|337911|fgenesh1_pg.C_scaffold_2000010 172 6e-42
> Ahg891467 jgi|Araly1|891467|Al_scaffold_0007_3453
Length=1416
Score = 2366 bits (1281), Expect = 0.0
Identities = 1371/1416 (97%), Gaps = 0/1416 (0%)
Strand=Plus/Plus
Query 80 ATGGGCATTGCACGGTGGCTCAACCGCACCGTGGGCTTCTTTGTCTTCGCTCTCCTCGAC 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCATTGCACGGTGGCTCAACCGCACCGTGGGCTTCTTTGTCTTCGCTCTCCTCGAC 60
Query 140 ATTGCTGATTTCTTGCTTTGTTACACTTACAAGACTTTGGATTACTTCTTGGAATCCGAG 199
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 61 ATTGCCGATTTCTTGCTATGTTATACTTACAAGACTTTGGATTACTTCTTGGAGTCCGAG 120
Query 200 AGGAAACCTTGCTACTGCTCTTCTCCACCAGAGGCTAAAGCCAAGACCGAGAAGATCATA 259
|||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 121 AGGAAACCTTGCTATTGCTCTTCTCCACCAGAGGCTCAAGCCAAGACCGCGAAGATCATA 180
Query 260 GTGTCGGAACGAGGCGGGTACTCAAAGGTTGTGTCTCTAACAAGAAGTAAGATCCATTTC 319
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGTCGGAAAGAGGCGGGTACTCAAAGGTTGTGTCTCTAACAAGAAGTAAGATCCATTTC 240
Query 320 GATGAGATCTCGGACACGCTTTACTCACGTGGCCCTTCACTTCTAACGAGGCTCTCTAAG 379
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GATGAGATCTCGGACACGCTTTACTCACGTGGTCCTTCACTTCTAACGAGGCTCTCTAAG 300
Query 380 CTCGTGAGGTCCGTGAAATGTTTTAATTATAAGGGTTTGATCATGAGAGGCAATGTGGTG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCGTGAGGTCCGTGAAATGTTTTAATTATAAGGGTTTGATCATGAGAGGCAATGTGGTG 360
Query 440 GAATCTTGTGATCATCATGAGTCTAAGAAAAAGATTAGCAAAGGTAAAAAGAGATTAATG 499
||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |||
Sbjct 361 GAATCTTGTGATCATCATGAGTCTAAGAAGAAGATTAGAAAAGCTAAAAAGAGATTGATG 420
Query 500 ACTTTGAATTCTACCGTGATTGAGAAATCTTCGACAGCTCCAAGATGGTCGGATTGCCAT 559
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTTGAATTCTACGGTGGTTGAGAAATCTTCGACAGCTCCAAGATGGTCGGATTGCCAT 480
Query 560 TGCAGTTTCTGCACTTCTTGGCTTACTTCTACCAACAGAGATTCTCTGTTTGTTAAAGTT 619
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 481 TGCAGTTTCTGCACTTCTTGGCTTACTTCTTCCAACAGAGATTCTCTGTTTGTCAAAGTT 540
Query 620 CAACAACCCAAAGATAACAAGAAGGCCCGAGACAACGTTGTGTTTATACATGGTTTTGTA 679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 CAACAACCCAAAGATAACAAGAAGGCCCGAGACAACGTTGTGTTTATACATGGTTTCGTA 600
Query 680 TCATCATCCGCGTTTTGGACGGAGACTCTCTTCCCAAACTTTTCTGATTCAGCCAAATCG 739
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 TCATCATCCGCGTTTTGGACGGAGACTCTCTTCCCAAATTTTTCTGATTCAGCCAAATCA 660
Query 740 AACTATAGGTTCATCGCAGTCGATCTTTTGGGCTATGGAAGAAGTCCTAAGCCAAATGAC 799
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 AACTACAGGTTCATCGCAGTCGATCTTTTAGGCTATGGAAGAAGTCCTAAGCCAAATGAC 720
Query 800 TCATTATATACTTTAAGAGAACATTTGGAGATGATTGAGAAATCGGTGATCTCTAAGTTC 859
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 TCGTTATATACTTTAAGAGAACATTTGGAGATGATTGAGAAATCGGTGATCTCTCAGTTC 780
Query 860 AAGCTCAAAACGTTCCACATAGTAGCTCATTCCCTAGGCTGCATTTTGGCTCTTGCACTC 919
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 781 AAGCTCAAAACGTTCCACATAGTAGCTCACTCCTTAGGCTGCATTTTGGCTCTTGCACTC 840
Query 920 GCAGTAAAACATCCGGGAGCTATCAAATCCCTTACTCTTTTGGCTCCTCCATATTACAAG 979
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCAGTTAAACATCCAGGAGCTATCAAATCCCTTACTCTTTTGGCTCCTCCATATTACAAG 900
Query 980 GTGCCAAAGGGAGTCCAACCAGCGCAATACGTGATGAGGGAAGTGGCTCGGAAGGAAGTT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTGCCAAAGGGAGTCCAACCAGCGCAATACGTGATGAGGGAAGTGGCTCGGAAGGAAGTT 960
Query 1040 TGGCCACCGATGCAGTTTGGTGCATCGGTGCTTAGCTGGTATGAGCACCTAGGCCGCACC 1099
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 961 TGGCCACCGATGCAGTTTGGTGCATCTGTACTTAGCTGGTATGAGCACCTAGGCCGGACC 1020
Query 1100 ATTGGCCTTGTCCTTATCAAGAACCATCAATTGATTGAATTTGTCACCCGCCTCCTTACC 1159
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1021 ATTGGCCTTGTCCTTATCAAAAACCATCACTTGATTGAATTTGTCACCCGCCTCCTCACC 1080
Query 1160 CTAAACAGGATGCGAACGTATTTGATAGAAGGATTCTTATGTCACACACATAATGGATCA 1219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 CTAAACAGGATGCGAACGTATTTGATAGAAGGATTCTTATGTCACACACATAATGGGTCA 1140
Query 1220 TTTCACACATTACACAACATCATCTTCGGGTCAGGAGCCAAGCTCGACTCGTATCTCGAC 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTTCACACATTACACAACATCATCTTCGGGTCAGGAGCCAAGCTCGACTCGTATCTCGAC 1200
Query 1280 CATGTCCGTGACCATGTGGACTGCGACGTCGCCATTTTCCACGGTGGCAAGGACGAGCTC 1339
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1201 CATGTCCGTGACCACGTGGACTGCGACGTTGCCATCTTCCACGGTGGCAAGGACGAGCTC 1260
Query 1340 ATTCCTGTGGAGTGTAGTTACAGTGTGAAGAGCAAAGTGCCACGTGCCACTGTCCACGTC 1399
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1261 ATTCCTGTGGAGTGTAGCTACAGTGTCAAGAGCAAAGTACCACGTGCCACTGTCCACGTC 1320
Query 1400 ATCCCTGACAAAGACCACATCACCATTGTCGTCGGCCGACAAAAAGACTTTGCACGAGAG 1459
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1321 ATCCCTGACAAAGACCACATCACCATTGTGGTTGGCCGACAAAAAGACTTTGCACGAGAG 1380
Query 1460 CTTGAGCTCATTTGGCAAAGAACCAAATCAACTTAA 1495
||||||||||||||||||||| || |||||||||||
Sbjct 1381 CTTGAGCTCATTTGGCAAAGATCCCAATCAACTTAA 1416
> Ahg358997 jgi|Araly1|358997|fgenesh1_pg.C_scaffold_9000037
Length=546
Score = 361 bits (195), Expect = 1e-98
Identities = 213/222 (96%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1253 GGAGCCAAGCTCGACTCGTATCTCGACCATGTCCGTGACCATGTGGACTGCGACGTCGCC 1312
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 322 GGAGCCAAGCTCGAGTCGTATCTCGACCATGTCCGTGACCACGTGGACTGCGACGTTGCC 381
Query 1313 ATTTTCCACGGTGGCAAGGACGAGCTCATTCCTGTGGAGTGTAGTTACAGTGTGAAGAGC 1372
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 382 ATCTTCCACGGTGGCAAGAACGAGCTCATTCCTGTGGAGTGTAGCTACAGTGTCAAGAGC 441
Query 1373 AAAGTGCCACGTGCCACTGTCCACGTCATCCCTGACAAAGACCACATCACCATTGTCGTC 1432
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 442 AAAGTGCCACGTGCCACTGTCCACGTCATCCCTGACAAAGACCACATCACCTTTGTGGTC 501
Query 1433 GGCCGACAAAAAGACTTTGCACGAGAGCTTGAGCTCATTTGG 1474
||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GGCCGACAAAAAGACTTTGCACGAGAGCTTGAGCTCATTTGG 543
> Ahg474084 jgi|Araly1|474084|fgenesh2_kg.1__4038__AT1G64670.1
Length=1655
Score = 172 bits (93), Expect = 6e-42
Identities = 263/339 (78%), Gaps = 36/339 (11%)
Strand=Plus/Plus
Query 75 ACATCATGGGCATT-GCACGGTGGCTCAACCGCACCGTGGGCTTCTTTGTCTTCGCTC-T 132
||| |||||| ||| ||||||||||||||||||||||||||||||| |||||| || |
Sbjct 60 ACAGCATGGG-ATTCTCACGGTGGCTCAACCGCACCGTGGGCTTCTTCGTCTTCT-TCAT 117
Query 133 CCTCGACATTGCTG-ATTTCTTGCTTTG-TT-ACACTTACAAGACT-TTGGATTACTTCT 188
||||||||||| || ||||||||||||| || || || |||||||| ||| ||| |||||
Sbjct 118 CCTCGACATTG-TGGATTTCTTGCTTTGCTTTAC-CT-ACAAGACTCTTG-ATTTCTTCT 173
Query 189 TGGAATCCGAGAGGAAACCTTGCTACTGCTCTTCTCCACCAGAGGCTAAA------GC-- 240
| || || ||| ||||||| |||||||||| | | || || ||||| ||| ||
Sbjct 174 TCGAGTCAGAGTGGAAACCCTGCTACTGCTGTCCGCCGCCTGAGGCCAAACCAATCGCGG 233
Query 241 CA--AG--ACC-GAG-----AAGATCATAGTGTCGGAACGA---GGCGGGTACTCAAAGG 287
| || | | ||| ||||| |||||||||||| || || | |||||| ||||
Sbjct 234 CTGGAGGGAGCAGAGTCGGTAAGATGATAGTGTCGGAAAGATCAGGAGAGTACTCGAAGG 293
Query 288 TTGTGTCTCTAACAAGAAGTAAGATCCATTTCGATGAGATCTCGGACACGCTTTACTCAC 347
| || || || ||||| | ||||||||| | ||||||||||| ||||| || |||||||
Sbjct 294 TAGTCTCACTCACAAGGACAAAGATCCATCTGGATGAGATCTCTGACACACTCTACTCAC 353
Query 348 GTGGCCCTTCACTTCTAACGAGGCTCTCTAAGCTCGTGA 386
| ||||||||| || || |||||| ||||||| ||||
Sbjct 354 G---CCCTTCACTCCTCACCAGGCTCACTAAGCTGGTGA 389
> Ahg337911 jgi|Araly1|337911|fgenesh1_pg.C_scaffold_2000010
Length=579
Score = 172 bits (93), Expect = 6e-42
Identities = 263/339 (78%), Gaps = 36/339 (11%)
Strand=Plus/Plus
Query 75 ACATCATGGGCATT-GCACGGTGGCTCAACCGCACCGTGGGCTTCTTTGTCTTCGCTC-T 132
||| |||||| ||| ||||||||||||||||||||||||||||||| |||||| || |
Sbjct 26 ACAGCATGGG-ATTCTCACGGTGGCTCAACCGCACCGTGGGCTTCTTCGTCTTCT-TCAT 83
Query 133 CCTCGACATTGCTG-ATTTCTTGCTTTG-TT-ACACTTACAAGACT-TTGGATTACTTCT 188
||||||||||| || ||||||||||||| || || || |||||||| ||| ||| |||||
Sbjct 84 CCTCGACATTG-TGGATTTCTTGCTTTGCTTTAC-CT-ACAAGACTCTTG-ATTTCTTCT 139
Query 189 TGGAATCCGAGAGGAAACCTTGCTACTGCTCTTCTCCACCAGAGGCTAAA------GC-- 240
| || || ||| ||||||| |||||||||| | | || || ||||| ||| ||
Sbjct 140 TCGAGTCAGAGTGGAAACCCTGCTACTGCTGTCCGCCGCCTGAGGCCAAACCAATCGCGG 199
Query 241 CA--AG--ACC-GAG-----AAGATCATAGTGTCGGAACGA---GGCGGGTACTCAAAGG 287
| || | | ||| ||||| |||||||||||| || || | |||||| ||||
Sbjct 200 CTGGAGGGAGCAGAGTCGGTAAGATGATAGTGTCGGAAAGATCAGGAGAGTACTCGAAGG 259
Query 288 TTGTGTCTCTAACAAGAAGTAAGATCCATTTCGATGAGATCTCGGACACGCTTTACTCAC 347
| || || || ||||| | ||||||||| | ||||||||||| ||||| || |||||||
Sbjct 260 TAGTCTCACTCACAAGGACAAAGATCCATCTGGATGAGATCTCTGACACACTCTACTCAC 319
Query 348 GTGGCCCTTCACTTCTAACGAGGCTCTCTAAGCTCGTGA 386
| ||||||||| || || |||||| ||||||| ||||
Sbjct 320 G---CCCTTCACTCCTCACCAGGCTCACTAAGCTGGTGA 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5