BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41910.1
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493793 jgi|Araly1|493793|fgenesh2_kg.7__3226__AT5G41910.1 894 0.0
Ahg313324 jgi|Araly1|313324|fgenesh1_pm.C_scaffold_1002104 472 2e-132
> Ahg493793 jgi|Araly1|493793|fgenesh2_kg.7__3226__AT5G41910.1
Length=646
Score = 894 bits (484), Expect = 0.0
Identities = 567/607 (93%), Gaps = 6/607 (1%)
Strand=Plus/Plus
Query 118 GAAATCAATGCAATTGCAACCGTCGACGATTCAAATGAGAAGCTGAACCAAATTATAAAC 177
|||| ||||| |||||||||||| ||||||||||| ||||| ||||||||| | ||||||
Sbjct 43 GAAAGCAATGAAATTGCAACCGTAGACGATTCAAAGGAGAATCTGAACCAAGTCATAAAC 102
Query 178 TCGAATCAGAAAATTTTAGAACTCCTTCATCAATTAAAACTCACCGTCTCTTCTTTCAC- 236
||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 103 TCGAATCAGAAAACTTTAGTACTACTTCATCAATTGAAACTCACCGTCTCTTCTTTCACT 162
Query 237 ACCTGCTTCTCAGCTTCACCTCCTCCAACGCCTCAATTCTCTTGTGATGGAGCTTGATAA 296
|| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 163 TCC-GCTTCTCAGCTTGATCTCCTCCAACGCCTCAATTCTCTTGTGATGGAGCTTGATAA 221
Query 297 TATGGCTAAGTTGTCTGATAAATGCAACATTCAAGTCCCCATTGAGGTTCTTAACTTGAT 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 222 TATGGCTAAGTTGTCTGATAAATGCAACATTCAAGTCCCCATGGAGGTTCTTAACTTGAT 281
Query 357 TGATGATGGGAAGAACCCAGATGAGTTTACAAAAGA-TGTTCTTAATAAGAACTGCATTG 415
||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||
Sbjct 282 TGATGATGGGAAGAACCCAGATGAGTTTACAAA-GAATGTTCTTAATAATAGCTGCATTG 340
Query 416 CTAAAAATCAAGTTACAAAGGGAAAGAGTGATGCTTTTAAGGGTTTGAGAAAACATCTCT 475
||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 341 CTAGAAATCAAGTTACAAAGGGCAAGACCGATGCTTTTAAGGGTTTGAGAAAACATCTTT 400
Query 476 TGGAGGAGCTTGAACAGGCTTTTCCTGATGAAGTCGAT-CGGTATAGAGACATACGTGCT 534
||||||||||||||||| |||||||||||||||||||| || |||||||| || ||||||
Sbjct 401 TGGAGGAGCTTGAACAGACTTTTCCTGATGAAGTCGATACG-TATAGAGAAATCCGTGCT 459
Query 535 AGTTATGCTGCTGAAGCAAAACGGTTGGCTCAAACGCAAAGTGTGTTACCAAATGGGGAT 594
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 460 AGTTATGCCGCTGAAGCAAAACGGTTGGCCCAATCGCAAAGTGTGTTACCAAATGGGGAT 519
Query 595 GCTAAGGTCAAGAGTGAGCTATAAGAGCTATGAATCTTGCCTTTTAGAATAAAATTTTCA 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CCTAAGGTCAAGAGTGAGCTATAAGAGCTATGAATCTTGCCTTTTAGAATAAAATTTTCA 579
Query 655 AGTAGATCAATGAGGATGTAAACGAACAAGCCTTCTTGGAATTTCTATAACATCCGTTGG 714
||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 580 TGTAGATCAACGAGAATGTAAACGAACAAGCCTTCTTGGAATTTCTATAATATCCGTTGG 639
Query 715 TTCTTTT 721
|| ||||
Sbjct 640 TTTTTTT 646
> Ahg313324 jgi|Araly1|313324|fgenesh1_pm.C_scaffold_1002104
Length=930
Score = 472 bits (255), Expect = 2e-132
Identities = 357/407 (88%), Gaps = 4/407 (1%)
Strand=Plus/Plus
Query 145 GATTCAAATGAGAAGCTGAACCAAATTATAAACTCGAATCAGAAAATTTTAGAACTCCTT 204
|||||||| ||||| |||| |||| | |||||||| | | |||||| ||| | | |||||
Sbjct 520 GATTCAAAGGAGAATCTGAGCCAAGTCATAAACTCTATTGAGAAAACTTTGGGAGTCCTT 579
Query 205 CATCAATTAAAACTCACCGTCTCTTCTTTCACACCTGCTTCTCAGCTTCACCTCCTCCAA 264
||||| ||| | || |||||| ||||||||||||| || |||||||| || ||||||||
Sbjct 580 CATCAGTTACACCTTACCGTCACTTCTTTCACACCCGCGTCTCAGCTCCATCTCCTCCAG 639
Query 265 CGCCTCAATTCTCTTGTGATGGAGCTTGATAATATGGCTAAGTTGTCTGATAAATGCAAC 324
||||| || ||||||||||||||||| ||||| ||| ||||||||||||| |||||||||
Sbjct 640 CGCCTTAACTCTCTTGTGATGGAGCTGGATAACATGACTAAGTTGTCTGAGAAATGCAAC 699
Query 325 ATTCAAGTCCCCATTGAGGTTCTTAACTTGATTGATGATGGGAAGAACCCAGATGAGTTT 384
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 700 ATTCAAGTCCCCATGGAAGTTCTTAACTTGATTGATGATGGGAAGAACCCGGATGAGTTT 759
Query 385 ACAAAAGATGTTCTTAATAAGAACTGCATTGCTAAAAATCAAGTTACAAAGGGAAAGAGT 444
|| |||||||||||||||| | |||||| |||| |||||||||||||||||| |||| |
Sbjct 760 ACGAAAGATGTTCTTAATA-G--CTGCATAGCTAGAAATCAAGTTACAAAGGGCAAGACT 816
Query 445 GATGCTTTTAAGGGTTTGAGAAAACATCTCTTGGAGGAGCTTGAACAGGCTTTTCCTGAT 504
||||||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 817 GATGCTTTTAAGGATTTGAGAAAACATATTTTGGAGGAGCTTGAACAGACTTTTCCTGAT 876
Query 505 GAAGTCGATCGGTATAGAGACATACGTGCTAGTTATGCTGCTG-AAG 550
||||||||| ||||||||| || |||||||||| ||| |||| |||
Sbjct 877 GAAGTCGATATGTATAGAGAAATCCGTGCTAGTTCTGCCGCTGTAAG 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26609796066
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5