BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41920.1 Length=1497 Score E Sequences producing significant alignments: (Bits) Value Ahg493792 jgi|Araly1|493792|fgenesh2_kg.7__3225__AT5G41920.1 2001 0.0 Ahg951853 jgi|Araly1|951853|scaffold_21300003.1 292 4e-78 Ahg939329 jgi|Araly1|939329|scaffold_503520.1 292 4e-78 > Ahg493792 jgi|Araly1|493792|fgenesh2_kg.7__3225__AT5G41920.1 Length=1432 Score = 2001 bits (1083), Expect = 0.0 Identities = 1341/1458 (92%), Gaps = 47/1458 (3%) Strand=Plus/Plus Query 17 TTCACAAAGAGCACTTGATTATAACATTGAATCTTTTGCAAAAAAG-ATAAAAATCTTTT 75 |||||||| ||||||||||||||||| |||||| |||||||||||| | ||||| | ||| Sbjct 1 TTCACAAACAGCACTTGATTATAACAGTGAATC-TTTGCAAAAAAGAAAAAAAAAC-TTT 58 Query 76 CAAGAAACTGATCCATCCAAAAT--ACTATCTTGTCTTCACTCTTCAAAATTCCTGTCAT 133 ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 59 CAAGAAACTGATCCATCCAAAATACACTATCTTGTCTTCACTCTACAAAATTCCTGTCAT 118 Query 134 TACTCTCTCGAACCctttctcttttcgaatctccacttttttttctatcttctgcttctt 193 |||||||||||| | | | || ||| | ||||| | | | |||| Sbjct 119 TACTCTCTCGAA--C---C-C--TT----TCT---C----TTTTCGA----AT-C-TCTT 153 Query 194 cttcttctctcttcAATGATTCCACTCTCACAAAATCTCCATGACTACAAAACGCATAGA 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 154 CTTCTTCTCTCTTCAATGATTCCACTCTCACAAAATCTCCATGACTACAAAACGTATAGA 213 Query 254 CAGAGATCTCCCATCTTCCGACGATCCTT---CCTCCGCTAAACGCCG--T-------AT 301 ||||||| ||||||||||||||||||||| || ||||||||||||| | || Sbjct 214 CAGAGATTTCCCATCTTCCGACGATCCTTCCGCCGCCGCTAAACGCCGTATCAACGACAT 273 Query 302 CGAATTCCCCGAAGAAACACTCGAAAACGACGGT---GCTGCCGCAATCAAACTCCTTAG 358 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 274 CGAATTCCCCGAAGAAACACTCGAAAACGACGGTGCCGCCGCCGCAATCAAACTCCTTAG 333 Query 359 CTTACTCCTCCAATGCGCCGAATACGTAGCTACTGATCATCTCCGTGAAGCTTCAACACT 418 |||||||||||||||||| |||||||| || ||| ||||||||||||||||||||||||| Sbjct 334 CTTACTCCTCCAATGCGCTGAATACGTCGCAACTAATCATCTCCGTGAAGCTTCAACACT 393 Query 419 TTTATCCGAAATCTCCGAGATATGTTCTCCGTTCGGTTCCTCGCCGGAGCGAGTCGTCGC 478 |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 394 CTTATCCGAAATCTCCGAGATATGTTCTCCGTTCGGTTCTTCGCCGGAGCGTGTCGTCGC 453 Query 479 TTACTTCGCTCAAGCGCTACAAACGCGCGTGATCAGCTCTTACCTCTCCGGCGCGTGTTC 538 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 454 TTACTTCGCACAAGCGCTACAAACGCGCGTGATCAGCTCTTACCTCTCTGGCGCGTGTAC 513 Query 539 TCCCCTCTCCGAGAAACCACTCACTGTTGTTCAGTCTCAGAAAATCTTCTCCGCCTTGCA 598 ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 514 TCCACTCTCCGAGAAACCATTCACTGTTGTTCAGTCTCAGAAACTCTTCTCCGCCTTGCA 573 Query 599 GACTTATAACTCCGTTAGTCCTCTGATCAAATTCTCACATTTCACGGCGAATCAAGCCAT 658 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 574 GACTTTTAACTCCGTTAGTCCTCTGATCAAATTCTCACATTTCACGGCGAATCAAGCGAT 633 Query 659 TTTTCAGGCGCTTGACGGAGAAGATTCCGTTCATATCATCGATCTCGATGTTATGCAAGG 718 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 634 TTTTCAGGCGCTTGACGGTGAAGATTCCGTTCATATCATCGATCTCGATGTTATGCAAGG 693 Query 719 TCTTCAATGGCCGGCTCTATTTCACATCCTCGCTTCACGTCCTCGAAAACTCCGATCAAT 778 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 694 TCTTCAATGGCCGGCTCTGTTTCACATCCTCGCTTCACGTCCTCGAAAACTCCGATCAAT 753 Query 779 TCGAATCACCGGATTTGGTTCCTCCTCCGATCTACTCGCTTCAACTGGCCGGAGACTCGC 838 ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 754 TCGAATCACCGGATTCGGTTCCTCCTCCGATCTCCTCGCTTCCACTGGCCGGAGACTCGC 813 Query 839 CGATTTCGCATCATCGTTAAACCTCCCTTTCGAATTTCATCCAATTGAAGGCATAATCGG 898 |||||||||||||||||||||||| || |||||||| |||||||||||||| | |||||| Sbjct 814 CGATTTCGCATCATCGTTAAACCTTCCGTTCGAATTCCATCCAATTGAAGGAAAAATCGG 873 Query 899 AAACCTAATCGATCCGAGCCAACTCGCAACGAGACAAGGAGAAGCTGTGGTGGTTCATTG 958 |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| || Sbjct 874 AAACCTAATCGATCCGAGTCAACTCGGGACGAGACAAGGGGAAGCTGTGGTGGTTCACTG 933 Query 959 GATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTCGAGACGTTGGAGATTCTACG 1018 |||||| ||||||||||| || || || |||||| ||||||||||||||||||||||||| Sbjct 934 GATGCAACACCGGTTATACGACGTCACCGGGAACGATCTCGAGACGTTGGAGATTCTACG 993 Query 1019 GAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAATTGAGCTACGACGATGGAGG 1078 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 994 GAGGTTGAAACCGAATCTGATTACGGTGGTGGAGCAAGAATTGAGCTACGACGATGGAGG 1053 Query 1079 AAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTATAGCGCGTTGTTTGACGCGCT 1138 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1054 AAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTATAGCGCGTTGTTCGACGCGCT 1113 Query 1139 AGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTCACGGTGGAGCAGATTGTTTTGGG 1198 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1114 TGGAGATGGATTGGGTGAGGAGAGTGGAGAGAGATTCACGGTGGAGCAGATTGTTTTGGC 1173 Query 1199 GACGGAGATAAGAAACATTGTGGCGCACGGAGGA-GGAAGAAGGAAGAGAATGAAGTGGA 1257 |||||||||||| || ||||||||||| |||||| ||| || ||| ||| |||||||||| Sbjct 1174 GACGGAGATAAGGAATATTGTGGCGCATGGAGGAAGGAGGA-GGAGGAGGATGAAGTGGA 1232 Query 1258 AAGAAGAACTGAGCCGGGTCGGGTTTAGACCTGTTTCGCTTCGGGGTAACCCGGCGACAC 1317 |||| || |||| ||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 1233 AAGAGGAGCTGAATCGGGTCGGGTTTAGACCCGTTTCGCTTCGGGGTAACCCGGCGATGC 1292 Query 1318 AAGCGGGTTTATTGTTGGGTATGTTACCGTGGAATGGATATACTTTGGTTGAAGAGAATG 1377 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1293 AAGCGGGTTTGTTGTTGGGTATGTTACCGAGGAATGGATATACTTTGGTTGAAGAGAATG 1352 Query 1378 GAACCCTCCGTCTTGGCTGGAAGGATCTCTCGCTTTTGACTGCCTCTGCCTGGAAATCTC 1437 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 GAACCCTCCGTCTTGGTTGGAAGGATCTCTCGCTTTTGACTGCCTCTGCCTGGAAATCTC 1412 Query 1438 AGCCGTTCGATTGATTTT 1455 |||||||||||||||||| Sbjct 1413 AGCCGTTCGATTGATTTT 1430 > Ahg951853 jgi|Araly1|951853|scaffold_21300003.1 Length=423 Score = 292 bits (158), Expect = 4e-78 Identities = 228/259 (88%), Gaps = 15/259 (6%) Strand=Plus/Plus Query 939 GAAGCTGTGGTGGTTCATTGGATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTC 998 ||||| ||||||||||| | |||||| |||||||||||||| || || ||||| ||||| Sbjct 1 GAAGCCGTGGTGGTTCACTAGATGCAACACCGGTTATATGACGTCACCCGGAACGATCTC 60 Query 999 GAGACGTTGGAGATTCTACGGAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAA 1058 ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || Sbjct 61 GAGACGTTGGAGATTTTACGGAGGCTGAAACCGAATCTGATTACGGTGGTGGAGCAAAAA 120 Query 1059 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCA-T--TAT 1115 |||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| Sbjct 121 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGGAGATTCGTGGAGGCTTTGCAGTACTAT 180 Query 1116 TATAGCGCGTTGTTTGACGCGCTAGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTC 1175 ||||||||| || | | | | | ||| |||||||| |||||||||||||||||| Sbjct 181 TATAGCGCGC-GT--G--G-G---G-A--TGGTTTGGGTGAGGAGAGTGGTGAGAGATTC 228 Query 1176 ACGGTGGAGCAGATTGTTT 1194 ||||||||||||||||||| Sbjct 229 ACGGTGGAGCAGATTGTTT 247 > Ahg939329 jgi|Araly1|939329|scaffold_503520.1 Length=332 Score = 292 bits (158), Expect = 4e-78 Identities = 225/256 (88%), Gaps = 9/256 (4%) Strand=Plus/Plus Query 939 GAAGCTGTGGTGGTTCATTGGATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTC 998 ||||| ||||||||||| | |||||| |||||||||||||| || || ||||| ||||| Sbjct 1 GAAGCCGTGGTGGTTCACTAGATGCAACACCGGTTATATGACGTCACCCGGAACGATCTC 60 Query 999 GAGACGTTGGAGATTCTACGGAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAA 1058 ||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| || Sbjct 61 GAGACGTTGGAGATTTTACGGAAGCTGAAACCGAATCTGATTACGGTGGTGGAGCAAAAA 120 Query 1059 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTAT 1118 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct 121 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGGAGATTCGTGGAGGCTTTGCAGTACTAT 180 Query 1119 AGCGCGTTGTTTGACGCGCTAGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTCACG 1178 | | | |||||| || ||||| |||||||| ||||||||||||||||||||| Sbjct 181 ------TA-TA-G-CGCGCTTGGGGATGGTTTGGGTGAGGAGAGTGGTGAGAGATTCACG 231 Query 1179 GTGGAGCAGATTGTTT 1194 |||||||||||||||| Sbjct 232 GTGGAGCAGATTGTTT 247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56030750395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5