BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41920.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493792 jgi|Araly1|493792|fgenesh2_kg.7__3225__AT5G41920.1 2001 0.0
Ahg951853 jgi|Araly1|951853|scaffold_21300003.1 292 4e-78
Ahg939329 jgi|Araly1|939329|scaffold_503520.1 292 4e-78
> Ahg493792 jgi|Araly1|493792|fgenesh2_kg.7__3225__AT5G41920.1
Length=1432
Score = 2001 bits (1083), Expect = 0.0
Identities = 1341/1458 (92%), Gaps = 47/1458 (3%)
Strand=Plus/Plus
Query 17 TTCACAAAGAGCACTTGATTATAACATTGAATCTTTTGCAAAAAAG-ATAAAAATCTTTT 75
|||||||| ||||||||||||||||| |||||| |||||||||||| | ||||| | |||
Sbjct 1 TTCACAAACAGCACTTGATTATAACAGTGAATC-TTTGCAAAAAAGAAAAAAAAAC-TTT 58
Query 76 CAAGAAACTGATCCATCCAAAAT--ACTATCTTGTCTTCACTCTTCAAAATTCCTGTCAT 133
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 59 CAAGAAACTGATCCATCCAAAATACACTATCTTGTCTTCACTCTACAAAATTCCTGTCAT 118
Query 134 TACTCTCTCGAACCctttctcttttcgaatctccacttttttttctatcttctgcttctt 193
|||||||||||| | | | || ||| | ||||| | | | ||||
Sbjct 119 TACTCTCTCGAA--C---C-C--TT----TCT---C----TTTTCGA----AT-C-TCTT 153
Query 194 cttcttctctcttcAATGATTCCACTCTCACAAAATCTCCATGACTACAAAACGCATAGA 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 154 CTTCTTCTCTCTTCAATGATTCCACTCTCACAAAATCTCCATGACTACAAAACGTATAGA 213
Query 254 CAGAGATCTCCCATCTTCCGACGATCCTT---CCTCCGCTAAACGCCG--T-------AT 301
||||||| ||||||||||||||||||||| || ||||||||||||| | ||
Sbjct 214 CAGAGATTTCCCATCTTCCGACGATCCTTCCGCCGCCGCTAAACGCCGTATCAACGACAT 273
Query 302 CGAATTCCCCGAAGAAACACTCGAAAACGACGGT---GCTGCCGCAATCAAACTCCTTAG 358
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 274 CGAATTCCCCGAAGAAACACTCGAAAACGACGGTGCCGCCGCCGCAATCAAACTCCTTAG 333
Query 359 CTTACTCCTCCAATGCGCCGAATACGTAGCTACTGATCATCTCCGTGAAGCTTCAACACT 418
|||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||
Sbjct 334 CTTACTCCTCCAATGCGCTGAATACGTCGCAACTAATCATCTCCGTGAAGCTTCAACACT 393
Query 419 TTTATCCGAAATCTCCGAGATATGTTCTCCGTTCGGTTCCTCGCCGGAGCGAGTCGTCGC 478
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 394 CTTATCCGAAATCTCCGAGATATGTTCTCCGTTCGGTTCTTCGCCGGAGCGTGTCGTCGC 453
Query 479 TTACTTCGCTCAAGCGCTACAAACGCGCGTGATCAGCTCTTACCTCTCCGGCGCGTGTTC 538
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 454 TTACTTCGCACAAGCGCTACAAACGCGCGTGATCAGCTCTTACCTCTCTGGCGCGTGTAC 513
Query 539 TCCCCTCTCCGAGAAACCACTCACTGTTGTTCAGTCTCAGAAAATCTTCTCCGCCTTGCA 598
||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 514 TCCACTCTCCGAGAAACCATTCACTGTTGTTCAGTCTCAGAAACTCTTCTCCGCCTTGCA 573
Query 599 GACTTATAACTCCGTTAGTCCTCTGATCAAATTCTCACATTTCACGGCGAATCAAGCCAT 658
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 574 GACTTTTAACTCCGTTAGTCCTCTGATCAAATTCTCACATTTCACGGCGAATCAAGCGAT 633
Query 659 TTTTCAGGCGCTTGACGGAGAAGATTCCGTTCATATCATCGATCTCGATGTTATGCAAGG 718
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TTTTCAGGCGCTTGACGGTGAAGATTCCGTTCATATCATCGATCTCGATGTTATGCAAGG 693
Query 719 TCTTCAATGGCCGGCTCTATTTCACATCCTCGCTTCACGTCCTCGAAAACTCCGATCAAT 778
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TCTTCAATGGCCGGCTCTGTTTCACATCCTCGCTTCACGTCCTCGAAAACTCCGATCAAT 753
Query 779 TCGAATCACCGGATTTGGTTCCTCCTCCGATCTACTCGCTTCAACTGGCCGGAGACTCGC 838
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 754 TCGAATCACCGGATTCGGTTCCTCCTCCGATCTCCTCGCTTCCACTGGCCGGAGACTCGC 813
Query 839 CGATTTCGCATCATCGTTAAACCTCCCTTTCGAATTTCATCCAATTGAAGGCATAATCGG 898
|||||||||||||||||||||||| || |||||||| |||||||||||||| | ||||||
Sbjct 814 CGATTTCGCATCATCGTTAAACCTTCCGTTCGAATTCCATCCAATTGAAGGAAAAATCGG 873
Query 899 AAACCTAATCGATCCGAGCCAACTCGCAACGAGACAAGGAGAAGCTGTGGTGGTTCATTG 958
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 874 AAACCTAATCGATCCGAGTCAACTCGGGACGAGACAAGGGGAAGCTGTGGTGGTTCACTG 933
Query 959 GATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTCGAGACGTTGGAGATTCTACG 1018
|||||| ||||||||||| || || || |||||| |||||||||||||||||||||||||
Sbjct 934 GATGCAACACCGGTTATACGACGTCACCGGGAACGATCTCGAGACGTTGGAGATTCTACG 993
Query 1019 GAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAATTGAGCTACGACGATGGAGG 1078
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 994 GAGGTTGAAACCGAATCTGATTACGGTGGTGGAGCAAGAATTGAGCTACGACGATGGAGG 1053
Query 1079 AAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTATAGCGCGTTGTTTGACGCGCT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1054 AAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTATAGCGCGTTGTTCGACGCGCT 1113
Query 1139 AGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTCACGGTGGAGCAGATTGTTTTGGG 1198
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1114 TGGAGATGGATTGGGTGAGGAGAGTGGAGAGAGATTCACGGTGGAGCAGATTGTTTTGGC 1173
Query 1199 GACGGAGATAAGAAACATTGTGGCGCACGGAGGA-GGAAGAAGGAAGAGAATGAAGTGGA 1257
|||||||||||| || ||||||||||| |||||| ||| || ||| ||| ||||||||||
Sbjct 1174 GACGGAGATAAGGAATATTGTGGCGCATGGAGGAAGGAGGA-GGAGGAGGATGAAGTGGA 1232
Query 1258 AAGAAGAACTGAGCCGGGTCGGGTTTAGACCTGTTTCGCTTCGGGGTAACCCGGCGACAC 1317
|||| || |||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1233 AAGAGGAGCTGAATCGGGTCGGGTTTAGACCCGTTTCGCTTCGGGGTAACCCGGCGATGC 1292
Query 1318 AAGCGGGTTTATTGTTGGGTATGTTACCGTGGAATGGATATACTTTGGTTGAAGAGAATG 1377
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1293 AAGCGGGTTTGTTGTTGGGTATGTTACCGAGGAATGGATATACTTTGGTTGAAGAGAATG 1352
Query 1378 GAACCCTCCGTCTTGGCTGGAAGGATCTCTCGCTTTTGACTGCCTCTGCCTGGAAATCTC 1437
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 GAACCCTCCGTCTTGGTTGGAAGGATCTCTCGCTTTTGACTGCCTCTGCCTGGAAATCTC 1412
Query 1438 AGCCGTTCGATTGATTTT 1455
||||||||||||||||||
Sbjct 1413 AGCCGTTCGATTGATTTT 1430
> Ahg951853 jgi|Araly1|951853|scaffold_21300003.1
Length=423
Score = 292 bits (158), Expect = 4e-78
Identities = 228/259 (88%), Gaps = 15/259 (6%)
Strand=Plus/Plus
Query 939 GAAGCTGTGGTGGTTCATTGGATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTC 998
||||| ||||||||||| | |||||| |||||||||||||| || || ||||| |||||
Sbjct 1 GAAGCCGTGGTGGTTCACTAGATGCAACACCGGTTATATGACGTCACCCGGAACGATCTC 60
Query 999 GAGACGTTGGAGATTCTACGGAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAA 1058
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 61 GAGACGTTGGAGATTTTACGGAGGCTGAAACCGAATCTGATTACGGTGGTGGAGCAAAAA 120
Query 1059 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCA-T--TAT 1115
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 121 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGGAGATTCGTGGAGGCTTTGCAGTACTAT 180
Query 1116 TATAGCGCGTTGTTTGACGCGCTAGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTC 1175
||||||||| || | | | | | ||| |||||||| ||||||||||||||||||
Sbjct 181 TATAGCGCGC-GT--G--G-G---G-A--TGGTTTGGGTGAGGAGAGTGGTGAGAGATTC 228
Query 1176 ACGGTGGAGCAGATTGTTT 1194
|||||||||||||||||||
Sbjct 229 ACGGTGGAGCAGATTGTTT 247
> Ahg939329 jgi|Araly1|939329|scaffold_503520.1
Length=332
Score = 292 bits (158), Expect = 4e-78
Identities = 225/256 (88%), Gaps = 9/256 (4%)
Strand=Plus/Plus
Query 939 GAAGCTGTGGTGGTTCATTGGATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTC 998
||||| ||||||||||| | |||||| |||||||||||||| || || ||||| |||||
Sbjct 1 GAAGCCGTGGTGGTTCACTAGATGCAACACCGGTTATATGACGTCACCCGGAACGATCTC 60
Query 999 GAGACGTTGGAGATTCTACGGAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAA 1058
||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 61 GAGACGTTGGAGATTTTACGGAAGCTGAAACCGAATCTGATTACGGTGGTGGAGCAAAAA 120
Query 1059 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTAT 1118
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 121 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGGAGATTCGTGGAGGCTTTGCAGTACTAT 180
Query 1119 AGCGCGTTGTTTGACGCGCTAGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTCACG 1178
| | | |||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct 181 ------TA-TA-G-CGCGCTTGGGGATGGTTTGGGTGAGGAGAGTGGTGAGAGATTCACG 231
Query 1179 GTGGAGCAGATTGTTT 1194
||||||||||||||||
Sbjct 232 GTGGAGCAGATTGTTT 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5