BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41940.1
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355779 jgi|Araly1|355779|fgenesh1_pg.C_scaffold_7002952 1882 0.0
Ahg947835 jgi|Araly1|947835|scaffold_704064.1 178 1e-43
> Ahg355779 jgi|Araly1|355779|fgenesh1_pg.C_scaffold_7002952
Length=1686
Score = 1882 bits (1019), Expect = 0.0
Identities = 1137/1195 (95%), Gaps = 4/1195 (0%)
Strand=Plus/Plus
Query 550 TGACGGAATATGAAAACCTGCGGAGACAGTGTCGCGAGATTCATGAACGCTATGAAAATG 609
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 494 TGACGGAATATGAAAACCTGCGGAGACAGTGTCGTGAGATTCATGAACGCAATGAAAATG 553
Query 610 TCTGCGACTCAAAGGAGACAGCTCAGAGCAGCAACACTGAAGACAGTCAGGTTCTTGAAT 669
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 554 GCTGCGACTCAAAGCAGACAGCTCAGAGCAGCAACACTGAAGACAGTCAGGTTCTTGATT 613
Query 670 CCCATGATATTGAGGAAGTCGAGAGTTCCACAAGAACCATCACCGTAGATGAATCAGAGA 729
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 614 CCCATGATATTGAGGAAGTCGAGAGTTCCACAAGATCCATCACCGTAGAAGAATCAGAGA 673
Query 730 AGTTGAATTCTGAATCGATTATGCAGGATGAGAACTGTGAAAAGAGCGATGTCACCACAG 789
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 674 AGTTGAATTCTGAATCGATTATGCAGGATGAGAACTGTGAAAAGAGCGATGTCACCACTG 733
Query 790 AAGATGCTGCTGGTAATGATTCAGACTCAACCAATCCTGAAGAAACCGAGACTTCACCTT 849
||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 734 AAGATGCTGCTGGTAATGACTCAGACTCAACCAACCCTGACGAAACCGAGACTTCACCTC 793
Query 850 TTCTAGCTAACGAAGAAGTAGAAAGCCACAATACTGTTAACCAAGAAAAAGA-AATTTCG 908
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 794 TTCTAGCTAACGAAGAAGTAGAAAGCCACAATACTGTTAACCAAGAAAAAGACAA-TTCG 852
Query 909 TCTCCATCATCAAAGCCAAAATCTCAGGCAGCGGACGAGGATTTCATGTCAACTTGGCAG 968
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 853 TCTCCATCATCAAAGCCAAAATCTCAGGCAGCGGAGGAGGATTTCATGTCAACGTGGCAG 912
Query 969 AGAATTATCCGCCTAGATGCTGTGAGAGCAAATGACGAATGGGTGCCCTACTCACCAACT 1028
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 913 AGAATTATTCGCCTAGATGCCGTGAGAGCAAATGACGAATGGGTGCCCTACTCACCGTCT 972
Query 1029 CAAGCTGCTGTTTCTGAGACAAAAGCCCGGGGAATAGCCATTCAGGTTGGTCTCAATGAC 1088
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 973 CAAGCTGCTGTTTCTGAGACAAAAGCCCGAGGAATAGCCATACAGGTTGGTCTCAATGAC 1032
Query 1089 TATGACCACTTGGAACCCTGCCGGATATTTCACGCAGCCCGCCTGGTCGGGATCCTTGAA 1148
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1033 TATGACCACTTGGAACCCTGCCGGATATTCCATGCAGCCCGCCTGGTCGGTATCCTTGAA 1092
Query 1149 GCCTACGCAGTCTATGATCCAGAAATTGGTTACTGTCAAGGAATGAGCGACTTACTATCT 1208
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1093 GCCTACGCAGTCTACGATCCAGAAATCGGTTACTGTCAAGGAATGAGCGACTTACTATCT 1152
Query 1209 CCTTTAATCGCAGTGATGGAAGACGACGTCTTAGCATTCTGGTGCTTTGTTGGCTTCATG 1268
||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1153 CCTTTAATCACAGTGATGGAAGATGACGTCTTAGCATTCTGGTGCTTTGTCGGGTTCATG 1212
Query 1269 AGTAAAGCACGGCATAATTTCCGGTTAGACGAGGTTGGAATCAGGCGGCAACTCTCAATG 1328
||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1213 AGTAAAGCAAGGCATAATTTCCGGCTAGACGAGGTTGGAATCAGGCGACAACTCTCAATG 1272
Query 1329 GTATCGAAAATCA-TAAAATTCAAAGACATTCACTTGTACCGACACTTGGAGAACCTTGA 1387
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GTATCGAAAATCATTAAAGTT-AAAGACATTCACTTGTACCGACACTTGGAGAACCTTGA 1331
Query 1388 AGCAGAAGACTGCTTCTTTGTATACCGTATGGTTGTAGTTCTGTTCAGACGAGAACTAAC 1447
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1332 AGCAGCAGACTGCTTCTTTGTATACCGTATGGTGGTAGTTCTGTTCAGACGAGAACTAAC 1391
Query 1448 CTTTGAGCAGACGTTGTGTCTCTGGGAAGTAATGTGGGCGGATCAAGCTGCAATACGAAC 1507
||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1392 CTTTGAGCAGACGCTGTGTCTCTGGGAAGTAATGTGGGCGGATCAAGCCGCAATAAGAAC 1451
Query 1508 TGGGATTGCGAAGGCGACATGGGGGAGAATCCGGTTACGAGCACCACCGACAGAAGATTT 1567
||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 1452 TGGGATTGCAAAGGCGACTTCTGGGAGAATCCGGTTACGAGCACCACCAACAGAAGATTT 1511
Query 1568 GTTGCTTTACGCGATAGCTGCAAGCGTGCTGCAGAGGAGGAAGACGATAATAGAGAAATA 1627
||| ||||| || ||||| || |||||| |||||||||| || || || |||||||||||
Sbjct 1512 GTTACTTTATGCAATAGCAGCGAGCGTGTTGCAGAGGAGAAAAACAATCATAGAGAAATA 1571
Query 1628 CAGTGGGATGGATGAGATAATGAAGGAATGTAACAGCATGGCTGGTCATCTTGATGTTTG 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 CAGTGGGATGGATGAGATAATGAAGGAATGTAACAGCATGGCTGGTCATCTTGATGTTTG 1631
Query 1688 GAAACTTCTAGACGATGCTCATGACTTAGTCGTCAATCTTCACGACAAGATCTAA 1742
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1632 GAAACTTCTAGACGATGCTCATGACTTAGTCGTCAAACTTCACGACAAGATCTAA 1686
Score = 597 bits (323), Expect = 9e-170
Identities = 377/403 (94%), Gaps = 3/403 (1%)
Strand=Plus/Plus
Query 96 ATGTTTCCACGACTACGATTGACGAAGGTCTTCTTCTCCCCGATCATCGCCGGGAAATGG 155
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1 ATGTTTCCACGTCTACGATTGACGAAGGTCTTCTTCTCCCCGATCCTCGCCGGCAAATGG 60
Query 156 ATCGTCTTTGCCGACGGTAGCAGCGGCGGCGGCGTTGGTAGAAATGGCTACTACGGTGGA 215
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||
Sbjct 61 ATCGTCTTTGCCGACGGTAGCAGCGGTGGCGGCGCCGGGAGAAATGGCTACTACGGCGGC 120
Query 216 TTGTGGTCGTCGGCCGTTATTCCTTCCAATGTTGGTTTAGCTGTCGCTGTCACCGTCATG 275
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTATGGTCGTCGGCTATTGTTCCTTCCAATGTTGGTTTAGCTGTCGCTGTCACCGTCATG 180
Query 276 GCCGTGGCCGTCGCTTTCACCGTCTACTCTCGTAGAGGAAGCATTGGATCACCGTGGTCA 335
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 181 GCCGTGGCCGTGGCTTTCACCGTCTACTCTCGTAGAGGAGGCATTGGATCACCTTGGTCA 240
Query 336 CTAAGGAGAAGAAAGCGAGTTCTTCAACCTAAACAATGGAATGCTTTTTTCACAGAGGAA 395
|| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 241 CTGAGGAGAAGAAAGCGTGTTCTTCAACCTAAGCAGTGGAATGCTTTTTTCACAGAGGAA 300
Query 396 GGGCGACTCAGTGATGGAGGTGTCAAATTTCTGAAGAAAGTTCGTAGTGGGGGTGTACAT 455
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 301 GGGCGACTCAGTGATGGAGGTG-CA--TTTCTGAAGAAAGTTCGTAGTGGGGGTGTACAT 357
Query 456 CCAAGCATCAGACCAGAAGTTTGGCCGTTCCTTCTTGGAGTGT 498
|||||||| |||||||||||||||||||| || ||||||||||
Sbjct 358 CCAAGCATTAGACCAGAAGTTTGGCCGTTTCTCCTTGGAGTGT 400
> Ahg947835 jgi|Araly1|947835|scaffold_704064.1
Length=2073
Score = 178 bits (96), Expect = 1e-43
Identities = 149/173 (86%), Gaps = 9/173 (5%)
Strand=Plus/Plus
Query 551 GACGGAATATGAAAACCTGCGGAGACAGTGTCGCGAGATTCATGAACGCTATGAAAATGT 610
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1785 GACGGAATATGAAAACATGCGGAGACAGTGTCGCGAGATTCATGAACGCAATGAAAATGG 1844
Query 611 CTGCGACTCAAAGGAGACAGCTCAGAGCAGCAACACTGAAGACAGTCAGGTTCTTGAATC 670
||| ||||||||| ||| || || | | | ||||||||||| |||||||||||| ||
Sbjct 1845 CTGTGACTCAAAGCAGA--GC--AG--C-G-A-CACTGAAGACATTCAGGTTCTTGATTC 1895
Query 671 CCATGATATTGAGGAAGTCGAGAGTTCCACAAGAACCATCACCGTAGATGAAT 723
|||| |||||||||| ||||| ||||| |||||| | |||||||||| ||||
Sbjct 1896 CCATAATATTGAGGAGGTCGATAGTTCTACAAGATCTGTCACCGTAGAAGAAT 1948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70124141045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5