BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41950.1
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493790 jgi|Araly1|493790|fgenesh2_kg.7__3223__AT5G41950.1 2329 0.0
> Ahg493790 jgi|Araly1|493790|fgenesh2_kg.7__3223__AT5G41950.1
Length=1784
Score = 2329 bits (1261), Expect = 0.0
Identities = 1442/1526 (94%), Gaps = 26/1526 (2%)
Strand=Plus/Plus
Query 321 GCCGGAGGAAGTAAAAACTGTGGTAACCGATGCGAAACCGGAGGAAGCACAATCTGAGGT 380
||||||||||||| || | | ||||||||||||||| |||||||||| ||||||||||||
Sbjct 179 GCCGGAGGAAGTACAATCGGAGGTAACCGATGCGAAGCCGGAGGAAGTACAATCTGAGGT 238
Query 381 GAAGCCGGAGGAGGTACAATCTGTGGTAACCGATACGAAACCGGATTTAACCGATGTGGA 440
||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 239 AAAGCCGGAGGAAGTACAATCTGTGGTAACCGATGTGAAACCGGAGTTAACCGATGTGGA 298
Query 441 TCTGTCTCCGGGAGGATCTGAGGAGATCCCGATCCGGTCGACGGAGGTTGAA-CAGGAA- 498
|||||| ||||||||||| |||||||||||||||| ||||| ||||| |||| ||||||
Sbjct 299 TCTGTCGCCGGGAGGATCCGAGGAGATCCCGATCCAGTCGAGGGAGG-TGAATCAGGAAT 357
Query 499 -----T---C---T-----A-CTACTTCTGTTCTGAAGAAAGATGATGATGGGAACAAGA 541
| | | | |||||||||||||||||||||| ||||||||||||||||
Sbjct 358 CTTCTTCCACTGATCAGGAATCTACTTCTGTTCTGAAGAAAGAAGATGATGGGAACAAGA 417
Query 542 CATTTACCATGAGAGAGCTT-CTTAGTGAATTAAAAAGCGAGGAAGGAGATGGCACTCCT 600
||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||
Sbjct 418 CATTTACCATGAGAGAG-TTGCTTAGCGAATTAAAAAGCGAGGAAGGAGATGGGACTCCT 476
Query 601 CACAGTTCTGCTTCTCCATTTAGTCGAGAAAGTGCTTCTCAACCAGCGGAGAACAATCCT 660
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CACAGTTCTGCTTCCCCCTTTAGTCGAGAAAGTGCTTCTCAACCAGCGGAGAACAATCCT 536
Query 661 GCAATGGATCTGATTAACAGGATCCAAGTTAACGACGAAGAGGGTCGATCTCGCCAACGT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 GCAATGGATCTGATTAACAGGATCCAAGTTAACGACGAAGAGGGTCGATCTCGCCAGCGT 596
Query 721 GTTCTTGCATTTGCTGCCCGCAAGTATGCAAGTGCGATAGAGAGAAATCCAGATGATCAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTTCTTGCATTTGCTGCCCGCAAGTATGCAAGTGCGATAGAGAGAAATCCAGATGATCAT 656
Query 781 GATGCATTATACAACTGGGCACTTATTCTCCAGGAAAGTGCTGATAATGTCAGCCCGGAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 657 GATGCATTATACAACTGGGCACTTATTCTCCAGGAAAGTGCTGATAATGTCAGTGCAGAT 716
Query 841 TCTGTTTCACCTTCTAAAGATGATTTGCTGGAGGAAGCTTGTAAGAAGTACGATGAGGCA 900
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 717 TCTGTTTCACCTTCTAAAGATGATTTGCTTGAGGAAGCTTGTAAGAAGTACGATGAGGCA 776
Query 901 ACCCGTCTCTGCCCGACGCTGTATGATGCTTACTACAACTGGGCTATTGCAATCTCTGAT 960
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 777 ACCCGTCTCTGCCCGACCCTTTATGATGCTTACTACAACTGGGCTATCGCAATCTCTGAT 836
Query 961 AGAGCAAAGATACGTGGTCGCACAAAGGAAGCTGAAGAACTATGGGAACAAGCGGCTGAT 1020
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| || ||
Sbjct 837 AGAGCAAAGATGCGTGGTCGCACAAAGGAGGCTGAAGAACTATGGGAACAGGCGACTAAT 896
Query 1021 AACTATGAAAAAGCTGTCCAGCTCAATTGGAACAGTTCCCAGGCGTTAAACAACTGGGGA 1080
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 897 AACTATGAAAAAGCTGTCCAGCTCAATTGGAACAGTTCCCAGGCATTAAACAACTGGGGA 956
Query 1081 CTGGTC-CTACAGGAACTCAGTCAAATCGTTCCTGCTAGGGAGAAGGAAAAAGTTGTCAG 1139
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CTGG-CGCTACAGGAACTCAGTCAAATCGTTCCTGCTAGGGAGAAGGAAAAAGTTGTCAG 1015
Query 1140 AACTGCCATTAGTAAGTTTCGGGCGGCAATCAGGTTGCAATTTGATTTCCATCGAGCCAT 1199
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1016 AACTGCCATTAGCAAGTTTCGGGCGGCGATCAGGTTGCAATTTGATTTCCATCGAGCCAT 1075
Query 1200 ATACAACCTTGGAACCGTTCTGTATGGATTAGCAGAAGACACACTTAGAACTGGGGGTTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1076 ATACAACCTTGGAACCGTTCTGTATGGATTAGCAGAAGACACACTTAGAACAGGGGGTTC 1135
Query 1260 AGGCAACGGCAAAGACATGCC-CCCTGGTGAGTTATACAGCCAGTCTGCCATCTACATTG 1318
||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 1136 AGGCAACGGCAAAGACATGCCTCCC-GGTGAGTTATACAGCCAATCTGCCATCTACATTG 1194
Query 1319 CTGCAGCGCATTCATTGAAGCCAAGTTACTCAGTTTACAGCAGCGCTTTGAGGCTTGTTC 1378
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1195 CTGCAGCTCATTCGTTGAAGCCAAGTTACTCGGTTTACAGCAGCGCTTTGAGGCTCGTTC 1254
Query 1379 GTTCCATGCTACCTCTCCCGCATCTTAAAGTTGGATATCTAACTGCACCACCTGTGGGCA 1438
|||| ||||||||||| || ||||||||||||||||||||||| ||| |||||||||| |
Sbjct 1255 GTTCAATGCTACCTCTACCACATCTTAAAGTTGGATATCTAACCGCAGCACCTGTGGGAA 1314
Query 1439 ACTCACTTGCTCCTCACAGTGATTGGAAACGCACAGAGTTTGAACTCAATCACGAGAGGC 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ACTCACTTGCTCCTCACAGTGATTGGAAACGCACAGAGTTTGAACTCAATCACGAGAGGC 1374
Query 1499 TTCTACAGGTACTGAAACCTGAACCAAGAGAAATGGGACGAAACCTGTCAGGAAAAGCAG 1558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1375 TTCTACAGGTACTGAAACCTGAACCAAGAGAAATGGGACGAAACCTGTCAGGAAAACCAG 1434
Query 1559 AGACAATGAGCACAAACGTGGAGAGGAAGACGGTAAAAGTGAACATTACAGAGATTGTAT 1618
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1435 AGACAATGAGCACAAATGTGGAGAGGAAGACGGTAAAAGTGAATATTACAGAGATTGTGT 1494
Query 1619 CAGTAACACCTTGTGCTGATCTCACTCTACCTCCTGGTGCTGGTCTCTGCATTGATACCA 1678
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1495 CAGTGACGCCTTGTGCTGATCTCACTCTACCTCCCGGTGCTGGTCTCTGCATTGATACCA 1554
Query 1679 TTCATGGCCCAGTTTTCTTGGTTGCAGATTCATGGGAGTCTTTAGATGGATGGCTTGACG 1738
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TTCATGGCCCAGTCTTCCTGGTTGCAGATTCATGGGAGTCTTTAGATGGATGGCTTGACG 1614
Query 1739 CAATTCGTTTGGTTTACACAATTTATGCGAGAGGGAAGAGTGATGTTTTAGCCGGTATTA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 CAATTCGTTTGGTTTACACAATTTATGCGAGAGGGAAGAGTGATGTTTTAGCCGGTATTA 1674
Query 1799 TCACCGGTTAATAAATACTTCATTTA 1824
|||||||||||||||||||||| |||
Sbjct 1675 TCACCGGTTAATAAATACTTCACTTA 1700
Score = 425 bits (230), Expect = 5e-118
Identities = 266/284 (94%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 80 TAACATACTGCGATCTTTTTTCAGCTTCTCTAATGGCGGATACTGTTGAAGAGCCTCAAT 139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAACATACTGCGATCTTTGTTCAGCTTCTCTAATGGCGGATACTGTTGAAGAGCCTCAAT 60
Query 140 TACAAAATGGAGCGGCACCAGCTGAGTCCGAAACCGAGCAAAATCCGATTCCGGAACCAC 199
| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 61 TGCAAAATGGAGCGGTACCAGGTGAGTCCGAAACCGAGCAAAATCCGACTCCGGAACCAC 120
Query 200 AACTCCAAACTGAGCCCAAACTAACCGGAGAAATTCCGGAAATAGAAGCGGATTTAACGC 259
|||||||||||||||||||||| |||| |||||||||||||||| || ||||| ||||
Sbjct 121 AACTCCAAACTGAGCCCAAACTTACCGAAGAAATTCCGGAAATAAAAACGGATGCGACGC 180
Query 260 CGGAGGAAGTACAATCGGAGGTAACGGATGCAAAGCCAGAGGAAGTACAATCTGAGGTAA 319
||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 181 CGGAGGAAGTACAATCGGAGGTAACCGATGCGAAGCCGGAGGAAGTACAATCTGAGGTAA 240
Query 320 AGCCGGAGGAAGTAAAAACTGTGGTAACCGATGCGAAACCGGAG 363
|||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 241 AGCCGGAGGAAGTACAATCTGTGGTAACCGATGTGAAACCGGAG 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73780804565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5