BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41960.1
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891461 jgi|Araly1|891461|Al_scaffold_0007_3447 865 0.0
> Ahg891461 jgi|Araly1|891461|Al_scaffold_0007_3447
Length=654
Score = 865 bits (468), Expect = 0.0
Identities = 604/666 (91%), Gaps = 24/666 (4%)
Strand=Plus/Plus
Query 47 ATGGCGTCTCTGTCGTGTCTCCCGATTTGCGGACTTTCATCTTCCGCTTCACTCTACACC 106
||||||||||||||||||||| ||||||||||||||||||||||||| || ||| | ||
Sbjct 1 ATGGCGTCTCTGTCGTGTCTCTCGATTTGCGGACTTTCATCTTCCGCCTCTTTCTCCCCC 60
Query 107 AAGGCCCGACTActttcttcttcttcttcttcCCCGTCGCCGCTTCCTCTAGCCTAT-CC 165
||| |||||||| || ||||| || | | ||||| |||||||||||| ||||| ||
Sbjct 61 AAGCCCCGACTA--GTC-TCTTC-TC--C-T--CCGTCACCGCTTCCTCTAACCTATCCC 111
Query 166 TCTACAAAACCCTAAGAAGCTATGTA-G-A-AAGATTGAGAGAGTAATTTGCAGAGCGGA 222
| ||| |||||||||||||||||||| | | |||||||||||||||||||||||||| ||
Sbjct 112 T-TACGAAACCCTAAGAAGCTATGTAGGAAGAAGATTGAGAGAGTAATTTGCAGAGCTGA 170
Query 223 GTTTTCACAGGACGCACCACTCGTAACAGCAATTGGTGCGTGTATCCTAAGTTCATTTGT 282
||||||||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 171 GTTTTCACAAGACGCGCCACTCGTAACCGCCATTGGTGCGTGTATCCTCAGTTCATTTGT 230
Query 283 TTTTCCGGTGGCGAAACGAGTCAACGATGA-G--GAAGAAGAAGAAG-A-A-AACTCAGC 336
|||||||| |||||||||||||||||||| | ||||||||||||| | | ||||||||
Sbjct 231 TTTTCCGGCAGCGAAACGAGTCAACGATGAGGAAGAAGAAGAAGAAGAAGAGAACTCAGC 290
Query 337 GATTGTGTCAACAGATATGAGATTAGCCGCCATGGGAATCATCAGCTTCATACCTTACTT 396
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 291 AATTGTGTCAACAGATATGAGATTAGCCGCCATGGGAATCATTAGCTTCATACCTTACTT 350
Query 397 CAATTGGCTGAGTTGGGTGTTTGCTTGGCTTGACACTGGAAAATCTCGTTATGCTGTTTA 456
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CAATTGGCTGAGTTGGGTCTTTGCTTGGCTTGACACTGGAAAATCTCGTTATGCTGTTTA 410
Query 457 TGCTCTTGTTTATCTTGTTCCTTATTTGAGTTCAAATCTGTCTATTTCTCCAGAAGAGAG 516
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 411 TGCTCTTGTTTATCTTCTTCCTTATTTGAGTTCGAATCTGTCTATTTCTCCAGAAGAGAG 470
Query 517 CTGGTTACCAATTACAAGCATTGTCTTGGGCATTATTCATGTTCAGCTTGAAGCAAGCAT 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CTGGTTACCAATTACAAGCATTGTCTTGGGCATTATTCATGTTCAGCTTGAAGCAAGCAT 530
Query 577 CGCAAATGGGGATGTTGAGACACTTGCATTCTTCAGAAACACATCTGATGACGATTTTTC 636
|||||||| ||||||||||||||| |||||||||||||||| | |||| | ||||||||
Sbjct 531 TGCAAATGGTGATGTTGAGACACTTTCATTCTTCAGAAACACTTGTGATAAAGATTTTTC 590
Query 637 ATCTAAGAAAAGAATCCATTTTAAGAAACATTTCAAGG-GAAAAAACAGTGACGA-TGAA 694
|||||||||| ||||||| ||| | ||||||| ||||| |||| | ||||||| | ||||
Sbjct 591 ATCTAAGAAACGAATCCACTTTGACAAACATTCCAAGGAGAAAGA-CAGTGAC-ACTGAA 648
Query 695 AATTAA 700
| ||||
Sbjct 649 AGTTAA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32366356533
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5