BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41970.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330340 jgi|Araly1|330340|fgenesh1_pm.C_scaffold_7002567 1868 0.0
> Ahg330340 jgi|Araly1|330340|fgenesh1_pm.C_scaffold_7002567
Length=1119
Score = 1868 bits (1011), Expect = 0.0
Identities = 1084/1120 (97%), Gaps = 2/1120 (0%)
Strand=Plus/Plus
Query 20 ATGTTTTCGGTAACGAAAGGTTTAATCAGAAACTTG-GCCTTGTTCCAAGTTCGTCTTCC 78
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1 ATGTTTTCGGTAACGAAAGGTTTAATCAGAAACTTGAG-CTTGTTCCAAGTTCGTCTTCC 59
Query 79 TCCTCTCGTAGCAGCAGTAATGGCTCCTTCAAGCGTCGTTAGGGTTTACTCTACCGCTAC 138
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 60 TCCTCTCGTAGCAGCAGTAATGGCTCCTTCAAGCGCCGTTAGGGTTTACTCTACTGCTAC 119
Query 139 CTCTCCTTCTCCTTCTGAAATTTCCGTCAAGAAAGTTGGTACTCATAATGGAAGCTTTCA 198
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 CTCTCCTTCTCCTTCTGAGATTTCCGTTAAGAAAGTTGGTACTCATAATGGAAGCTTTCA 179
Query 199 CTGCGACGAAGCTCTCGGCTGTTTCATGATTCGCCTCGTCGATAAATTCTCCGGCGCTGA 258
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTGCGACGAAGCTCTCGGTTGCTTCATGATTCGCCTCGTCGATAAATTCTCCGGCGCTGA 239
Query 259 TATCGTCCGTTCTCGTGACCCTAAGATATTGGCAGAACTTGATGCAGTGCTTGATGTTGG 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TATCGTCCGTTCTCGTGACCCTAAGATATTGGCAGAACTTGATGCAGTGCTTGATGTTGG 299
Query 319 AGGTGTTTATGATCCGGAGCATGACCGTTATGATCATCACCAGAAAGGTTTTGAAGAGGT 378
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGGTGTTTATGATCCTGAGCATGACCGTTATGATCATCACCAGAAAGGTTTTGAAGAGGT 359
Query 379 TTTTGGACATGGCTTCAACACTAAGCTCAGTAGTGCTGGTCTTGTTTACAAGCATTTTGG 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTTGGACATGGCTTCAACACTAAGCTCAGTAGTGCTGGTCTTGTTTACAAGCATTTTGG 419
Query 439 AAAGGAGATCATAGCTAAGGAACTTAATGTCGAACAAGATCACCCTGATGTTCTTCGGTT 498
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TAAGGAGATCATAGCTAAAGAACTTAATGTTGAACAAGATCACCCTGATGTTCTTCGGTT 479
Query 499 GTTTTTAGCTGTCTACAAGAGCTTCATGGAGGCAATTGATGCTGTGGACAATGGAATAAA 558
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GTTTTTAGCTGTCTATAAGAGCTTCATGGAGGCAATTGATGCTGTGGACAACGGAATAAA 539
Query 559 CCGGTATGATACTGATCAGCCTCCACGATATGTGAACAACACACATCTGTCTCCAAGGGT 618
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 CCGGTATGATACTGATCAGCCTCCACGATATGTGAACAACACACATCTGTCTGCAAGGGT 599
Query 619 TGGAAGATTAAATCTGGATTGGATTGACCCTGACCAGTCACAAGAAAAGGAGAATGAAGC 678
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGGAAGATTAAATATGGATTGGATTGACCCTGACCAGTCACAAGAAAAGGAGAATGAAGC 659
Query 679 TTTCCAACGTGCAATGGCTCTAGCTGGAAAAGAGTTCCTCGAAAGTGTTCAGTTCCATGC 738
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 660 TTTCCAACGTGCAATGGCTCTAGCTGGAAAAGAGTTCCTCGAAAGTGTCCAGTTTCATGC 719
Query 739 AAGATCGTGGTTACCGGCTCGATCAATTGTGATGCAGTGTCTTGAAGAAAGATTCAAGAC 798
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAGATCATGGTTACCGGCTCGATCAATTGTGATGCAGTGTCTTGAAGAAAGATTCAAGAC 779
Query 799 AGACCCCAGCGGTGAGATCATGATATTGGATAGATTTTGCCCTTGGAAGCTTCATTTGTT 858
||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 780 AGACCCCAGTGGTGAGATCATGATATTGAATAAATTTTGCCCTTGGAAGCTTCATTTGTT 839
Query 859 CGAGCTTGAGCAAGAAATGAAGATCGAGCCTCTCATCAAATACGTCATTTACCAGGACGA 918
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 840 CGAGCTTGAGCAAGAAATAAAGATTGAGCCTCTCATCAAATACGTCATCTACCAGGACGA 899
Query 919 GAGAGCAAAGCAGTGGAGAGTTCAAGCAGTGGCGGTCGCACCAGACAGGTTTGAGAACCG 978
||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GAGAGGAAAGCAATGGAGAGTTCAAGCAGTGGCGGTTGCACCAGACAGGTTTGAGAACCG 959
Query 979 AAAGCCTCTCCCTGAGAAATGGAGAGGCCTTAGGGATGAGGAACTCTCGAAAGCTGCTGA 1038
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 960 AAAGCCTCTCCCTGAGAAATGGAGAGGCCTTAGGGATGAGGAGCTCTCTAAAGTTGCTGA 1019
Query 1039 GATTCCCGGTTGTGTCTTTGTCCACATGAGTGGCTTTATCGGCGGAAACCAATCCTATGA 1098
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 GATTCCCGGTTGTGTCTTTGTCCACATGAGTGGCTTTATCGGCGGAAACCAATCGTATGA 1079
Query 1099 CGGCGCTCTATCCATGGCTCAAACCGCACTCACTCTCTGA 1138
||| ||| |||||||||||| ||| |||||||||||||||
Sbjct 1080 CGGTGCTTTATCCATGGCTCGAACTGCACTCACTCTCTGA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5