BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41992.1
Length=2254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493786 jgi|Araly1|493786|fgenesh2_kg.7__3219__AT5G41992.1 3343 0.0
Ahg906932 jgi|Araly1|906932|Al_scaffold_0002_13 599 3e-170
> Ahg493786 jgi|Araly1|493786|fgenesh2_kg.7__3219__AT5G41992.1
Length=2182
Score = 3343 bits (1810), Expect = 0.0
Identities = 2046/2155 (95%), Gaps = 35/2155 (2%)
Strand=Plus/Plus
Query 81 AAATCATGGTGGATCATCAATGGAAGGATTTAATCGGATAAAAGAGAAGAGACGGAATCA 140
||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||
Sbjct 46 AAATCATGGTGGATCATCAATGGAAGGATCTAATCGGATAAAAGTGACGCGACGGAATCA 105
Query 141 CGACGGGAGAAGAGATCGGGAAATCGGAAAATCGGAGATGATGGGGATTTCTTTCGCCGC 200
|||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||
Sbjct 106 CGACGGGAGAAGAGATCGGGAATTCGGAAAATCGGAGATTATGGGGATTCCATTCGCCGC 165
Query 201 CAAACTCCGTTTCCGATCTCGATTTCGAACTTCTTCAATCGATTCTTATTGCTTCGCTCG 260
||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 166 CAAACTCCGATTCCGATCACGATTTCG-A--TCTTCAATCGATTCTTATTGCTTCGCTCG 222
Query 261 TGAGGCTTTCTCCGATTG--T-A------TCTCCTCCGTCCAtttcttcttcttataacc 311
|||||||||||||||||| | | ||||||||||| |||||||||||||||||||
Sbjct 223 TGAGGCTTTCTCCGATTGTATCATCCCCGTCTCCTCCGTCAATTTCTTCTTCTTATAACC 282
Query 312 tttttctttgtaataacctccgtcctcttcagctttctttcttttcatcttcaatctcac 371
||||| |||||||||||| | || ||| ||||||||| |||| | |||||||||||
Sbjct 283 -TTTTC-TTGTAATAACCT-CTTCAGCTT--TCTTTCTTTC-TTTCGTTTTCAATCTCAC 336
Query 372 cttaaattctccacttttttcttcttc-tc--cttctgttctcGATTGCTTTGTTTGTTG 428
|| ||||||||||||||||||||||| || |||||||| ||||||| |||||||
Sbjct 337 CTCGAATTCTCCACTTTTTTCTTCTTCTTCTTCTTCTGTTTTCGATTG----GTTTGTT- 391
Query 429 TGTTGTGCATACATATATGGCTTCTGGTTCTGGATTTTTAGGTCAGATATCGTCCATGGA 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TGTTGTGCATACATATATGGCTTCTGGTTCTGGATTTTTAGGTCAGATATCGTCCATGGA 451
Query 489 AGAGGCTGATTTTGCCGAGAAAGATCCTTCTGGCCGTTACATCAGGTATGATGATGTTCT 548
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 AGAGGCTGATTTCGCCGAGAAAGATCCTTCTGGCCGTTACATCAGGTATGATGATGTTCT 511
Query 549 GGGGAGAGGAGCTTTCAAGACTGTATATAAGGCGTTTGACGAAGTAGACGGGATTGAAGT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 512 GGGGAGAGGAGCTTTCAAGACTGTATATAAGGCGTTTGACGAAGTAGACGGGATTGAGGT 571
Query 609 TGCTTGGAACCTAGTTAGCATTGAAGATGTAATGCAGATGCCTGGTCAACTTGAAAGGCT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TGCTTGGAACCTAGTTAGCATTGAAGATGTAATGCAGATGCCTGGTCAACTTGAAAGGCT 631
Query 669 ATATTCTGAAGTTCATCTACTAAAGGCTCTAAAACATGAAAACATCATCAAACTCTTTTA 728
|||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 632 ATATTCTGAAGTTCATTTACTAAAAGCTCTAAAACATGAAAACATTATCAAACTCTTTTA 691
Query 729 CTCTTGGGTTGACGAAAAGAACAAGACTATTAACATGATCACTGAGCTTTTCACCTCTGG 788
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CTCCTGGGTTGACGAAAAGAACAAGACTATTAACATGATCACTGAGCTTTTCACCTCTGG 751
Query 789 TAGTCTCAGGGTATATCGTAAGAAGCATAGGAAGGTTGATCCCAAGGCCATCAAGAACTG 848
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 752 TAGTCTGAGGGTATATCGTAAGAAGCATAGGAAGGTCGATCCCAAGGCCATCAAGAACTG 811
Query 849 GGCAAGGCAGATTCTCAAAGGCCTGA-ACTATTTGCATTCTCAGAACCCTCCGGTAATTC 907
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 812 GGCAAGGCAGATTCTCAAAGGCCT-ACAGTATTTGCATTCTCAGAACCCTCCGGTAATTC 870
Query 908 ACCGGGATCTGAAGTGTGACAATATATTTGTCAATGGAAATACTGGAGAGGTCAAAATCG 967
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 871 ACCGGGATCTAAAGTGTGACAATATATTTGTCAATGGAAATACTGGAGAGGTCAAAATTG 930
Query 968 GAGATCTCGGGCTCGCAACTGTACTGCAGCAGCCCACTGCTCGAAGTGTGATAGGTACTC 1027
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 931 GAGATCTCGGGCTTGCAACTGTACTGCAGCAATCCACTGCTCGAAGTGTGATAGGTACTC 990
Query 1028 CTGAATTCATGGCACCTGAACTGTATGAAGAGGAATACAATGAGCTTGTGGACATCTATT 1087
||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 991 CTGAATTCATGGCGCCTGAGCTGTACGAAGAGGAATACAATGAGCTTGTTGACATCTATT 1050
Query 1088 CTTTTGGCATGTGTATGTTGGAGATGGTAACCTGTGAATATCCATACAACGAGTGCAGAA 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CTTTTGGCATGTGTATGTTGGAGATGGTAACCTGTGAATATCCATACAACGAGTGCAGAA 1110
Query 1148 ACCAGGCTCAAATTTATAAAAAGGTCACCTCGAACATAAAGCCTCAGTCTCTTGGCAAAG 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1111 ACCAGGCTCAAATTTATAAAAAGGTCACCTCGAACATAAAGCCTCAGTCTCTCGGTAAAG 1170
Query 1208 TTGACGATCCTCAAGTTAGGCAATTTATAGAGAAATGTCTTCTTCCTGCCTCTTCCAGAC 1267
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1171 TTGACGATCCTCAAGTTAGGCAATTCATAGAGAAATGTCTTCTTCCTGCCTCTTCCAGAC 1230
Query 1268 CAACTGCCCTCGAGCTCTCGAAGGACCCATTCCTTGCAAGGGATGGAGGCAAGGACTCTG 1327
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1231 CAACTGCCCTCGAGCTCTCGAAGGACCCATTCCTTGCAAGAGATGGAGGCAAGGACTCTG 1290
Query 1328 CTCTGCTTGCTTCATCAAGCACATCATCTAAATA-TGTGAGACCACCACAGCTTGAACAT 1386
|||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1291 CTCTCCTTGCTTCATCAAGCACATCATCTAAA-ACTGTGAGACCACCACAGCTTGAACAT 1349
Query 1387 CTTCCCATGGATGTGGATCATAACGAGAATAAAAGTGTTTCAAGCAACGAAGACTACCCA 1446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1350 CTTCCCATGGATGTGGATCATAACGAGAATAAAAGTGTTTCAAGCAACGAAGACTATCCA 1409
Query 1447 TGGTCCCAAACCATTGAACTTCAGAGGATTGCAGAGAATAAAGAGTTCAGGTTGAGAGGT 1506
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 TGGTGCCAAACCATGGAACTTCAGAGGATTGCAGAGAATAAAGAGTTCAGGTTGAGAGGA 1469
Query 1507 GAGAGGAGCGATGATGTCACAGCGTCTATGGTTCTCCGTATTGCTGACCCGTCTGGTAAA 1566
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1470 GAGAGGAGCGATGATGTCACAGCGTCTATGGTTCTCCGTATCGCTGACCCGTCTGGTAAA 1529
Query 1567 TGTAGAATCGTACACTTTGCATTCTATCTGGAGTCAGACACAGCAACAGCAATCGCTGAG 1626
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1530 TGTAGAATCGTACACTTTGCATTCTATCTGGATTCAGACACAGCAACAGCAATCGCTGAG 1589
Query 1627 GAAATGGTTGAGGAACTGCATTTAACTAGCCAAGAGGTCGTTGTGATAGCTGATATGATC 1686
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1590 GAAATGGTTGAGGAATTGCATTTAACTAGCCAAGAGGTTATTGTGATAGCTGATATGATC 1649
Query 1687 GATGACTTCATAATGCAACTTCTCTCTGACCGGACCTCGTCGCATCATAACCAAAACTCT 1746
|||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1650 GATGACTTGATAATGCAACTTCACTCTGACCGGACCTCGTCGCATCATAATCAAAACTCT 1709
Query 1747 CCACGTCTAACCC---ATGAGGATCATGAAGCAGCAAATCAGCAAACTGTGAACTCGAAA 1803
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 CCACGTCTAACCCATGATGAGGATCATGAAGCAGCAAATCAGCAAACTGTGAACTCGAAA 1769
Query 1804 GATGAAGAAGCTGCAGGACAATCAATGAAGTCAGACATATCAGCAGACTATTACTTTCCC 1863
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1770 GATGAAGAAGCTGCAGGACAATCAATGAAGTCAGACATATCAGCAGACTACTACTTTCCC 1829
Query 1864 TACTCAGCAAACGACGGAAATGCTGCCATGGAAGCTGGTCGAGATGCAGAGTCGATGAGC 1923
||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1830 TACTCCTCAAACAACGGAAATGCTGCCACGGAAGCTGGTCGAGATGCAGAGTCGATGAGC 1889
Query 1924 TCGTATCTGGATTCTTGCTCAATGATGTCAACCATTTACAATCTTTCCATTTCAGACAAT 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 TCGTATCTGGATTCTTGCTCAATGATGTCAACCATTTACAATCTTTCCATTTCAGACAAT 1949
Query 1984 GATTACCCAGAAGATCTCAAGACAGAACTAAACCTGATCGAGTCACAGTTTAACCAGTCC 2043
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1950 GATTACCCAGAAGATCTCAAGACAGAACTTAACCTGATCGAGTCACAGTTTAACCAGTCC 2009
Query 2044 TTCCAAGATCTGCTGAAACTGAAAGAGGATGCAATAGAGAACGCTAAGCGAAAATGGATT 2103
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2010 TTCCAAGATCTGCTGAAACTGAAAGAGGATGCTATAGAGAACGCAAAGCGAAAATGGATT 2069
Query 2104 ACGAAAAAGCAAAAAGCAGTTAACATCTCTTGATTCAAAAGCTCTGTTTTTGATATTTTA 2163
|||||||||||||||||||| || ||| |||||||||||||||| ||||||||||| |
Sbjct 2070 ACGAAAAAGCAAAAAGCAGTGGTCAGCTCCTGATTCAAAAGCTCTGGTTTTGATATTT-A 2128
Query 2164 CTCTTCTTTTGGTCTTCAACTTTGCTGAGATCGGTGTGTTATACATTTGGTGTTT 2218
|||| |||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 2129 CTCTCCTTTTGGTCTTCT-CTTCCCTGAGATCGGTGTGATATACATTTGGTGTTT 2182
> Ahg906932 jgi|Araly1|906932|Al_scaffold_0002_13
Length=3252
Score = 599 bits (324), Expect = 3e-170
Identities = 693/866 (80%), Gaps = 46/866 (5%)
Strand=Plus/Plus
Query 868 GGCCTGAACTATTTGCATTCTCAGAACCCTCCGGTAATTCACCGGGATCTGAAGTGTGAC 927
||||| ||| |||||||||||||| |||||| |||||||||||||| || |||||||||
Sbjct 2059 GGCCTCCACTTTTTGCATTCTCAGACCCCTCCTGTAATTCACCGGGACCTTAAGTGTGAC 2118
Query 928 AATATATTTGTCAATGGAAATACTGGAGAGGTCAAAATCGGAGATCTCGGGCTCGCAACT 987
||||| |||||||| |||||||| ||||||||||||||||||||||| || || ||| ||
Sbjct 2119 AATATTTTTGTCAACGGAAATACCGGAGAGGTCAAAATCGGAGATCTTGGCCTTGCAGCT 2178
Query 988 G-TACTGCAGCAGCCCACTGCTCGAAGTGTGATAGGTACTCCTGAATTCATGGCACCTGA 1046
| || |||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 GTTA-TGCAACAACCCACTGCTCGAAGTGTGATAGGTACTCCTGAATTCATGGCACCTGA 2237
Query 1047 ACTGTATGAAGAGGAATACAATGAGCTTGTGGACATCTATTCTTTTGGCATGTGTATGTT 1106
|| |||||||| ||||| ||| | ||||||||||||||||||||||||||||| |||||
Sbjct 2238 GCTCTATGAAGAAGAATATAATCAACTTGTGGACATCTATTCTTTTGGCATGTGCATGTT 2297
Query 1107 GGAGATGGTAACCTGTGAATATCCATACAACGAGTGCAGAAACCAGGCTCAAATTTATAA 1166
|||||||||||| |||||||||||||| | ||| |||||||||||||||||||| || ||
Sbjct 2298 GGAGATGGTAACATGTGAATATCCATATAGCGAATGCAGAAACCAGGCTCAAATATACAA 2357
Query 1167 AAAGGTCACCTCGAACATAAAGCCTCAGTCTCTTGGCAAAGTTGACGATCCTCAAGTTAG 1226
||||| |||||| ||||| ||||| ||||| |||||||||| |||||||||||||
Sbjct 2358 GAAGGTTACCTCGGGTATAAAACCTCAATCTCTCAGCAAAGTTGATGATCCTCAAGTTAA 2417
Query 1227 GCAATTTATAGAGAAATGTCTTCTTCCTGCCTC-TTCCAGACCAACTGCCCTCGAGCTC- 1284
|||||| |||||||| |||||||| || || || ||| ||||||||||| || || |||
Sbjct 2418 GCAATTCATAGAGAAGTGTCTTCTCCCAGC-TCCTTCTAGACCAACTGCTCTAGATCTCC 2476
Query 1285 TCGAAGGACCCATTCCTTGCAAGG-GATGGAGGCAAGGACTCTGCTCT-GCTTGCTTCAT 1342
| |||||||| | |||||||| | ||||| | ||||||||| |||| ||| |||||||
Sbjct 2477 T-GAAGGACCAACTCCTTGCA-GTAGATGGCGCCAAGGACTCCACTCTTGCT-GCTTCAT 2533
Query 1343 CAAGCACATCAT-CTAAATATGTGAGACCA-CCACAGCT-TGAACATCTTCCCATGGATG 1399
|| |||| ||| | ||| || | | || ||||| || |||| ||| || |||||||
Sbjct 2534 TAAACACAACATTC-AAACCTGCAA-AGCAACCACA-CTCTGAATATCGTCGTATGGATG 2590
Query 1400 TGGATCATAACGAGAATAAAAGTGTTTCAA---GC---------AA---C-G--AAGACT 1441
| |||||||| ||||||| ||||||||| | || || | | |||| |
Sbjct 2591 TTGATCATAAGGAGAATACAAGTGTTTCCATCTGCTCCTCTGCCAAAAGCAGCCAAGAAT 2650
Query 1442 ACCCATGG-TCCCAAACCATTGAACTTCAGAGGATTGCAGAGAATAAAGAGTTCAGGTTG 1500
||||| ||| ||||||||||| | |||||| |||| || |||| || |||||||||
Sbjct 2651 GTGCATGGCTCC-AAACCATTGAAGTCCAGAGGGTTGCTGAAAATACCGAATTCAGGTTG 2709
Query 1501 AGAGGTGAGAGGAGCGATGATGTCACAGCGTCTATGGTTCTCCGTATTGCTGACCCGTCT 1560
|| | |||||||| |||||||| |||| || |||| ||| ||||| || | | | |||
Sbjct 2710 AGTGCAGAGAGGAGAGATGATGTGGCAGCATCAATGGCTCTGCGTATCGCGGGCTCATCT 2769
Query 1561 GGTAAATGTA-GAATCGTACACTTTGCATT-CTATCTGGAGTCAGACACAGCAACAGCAA 1618
||| || | | ||| || | |||| ||| | ||||| || |||||||||||| ||||
Sbjct 2770 GGTCAA-GCAAGAAAAGTTGATTTTG-ATTTCAATCTGAAGACAGACACAGCAAGAGCAG 2827
Query 1619 TCGCT-GAGGAAATGGTTGAGGAACT-GCATTTAACTAGCCAAGAGGTCGTTGTGATAGC 1676
| | | ||| |||||||| || || | || | | || ||||||| ||||||||||
Sbjct 2828 TTA-TAGGGGAGATGGTTGAAGAGCTTG-ATCTGTCAAGTGAAGAGGTTATTGTGATAGC 2885
Query 1677 TGATATGATCGATGA-CTTCATAATG 1701
||| ||||| ||||| || ||||||
Sbjct 2886 TGAGATGATAGATGAACTG-ATAATG 2910
Score = 222 bits (120), Expect = 8e-57
Identities = 185/217 (85%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 573 ATATAAGGCGTTTGACGAAGTAGACGGGATTGAAGTTGCTTGGAACCT-AGTTAGCATTG 631
||||||||| ||||| ||||| || || |||||||||||||||||||| | | ||||| |
Sbjct 1845 ATATAAGGCATTTGATGAAGTCGAAGGTATTGAAGTTGCTTGGAACCTCA-TGAGCATCG 1903
Query 632 AAGATGTAATGCAGATGCCTGGTCAACTTGAAAGGCTATATTCTGAAGTTCATCTACTAA 691
|| |||| |||||||||||| |||||||| ||||||||||| ||||| ||||| || |
Sbjct 1904 AACATGTCTTGCAGATGCCTGCCCAACTTGATAGGCTATATTCCGAAGTCCATCTCCTCA 1963
Query 692 AGGCTCTAAAACATGAAAACATCATCAAACTCTTTTACTCTTGGGTTGACGAAAAGAACA 751
| | || |||||||| ||||||||||||||||| |||||||||||||| || | ||||
Sbjct 1964 ATTCCCTTAAACATGATAACATCATCAAACTCTTCTACTCTTGGGTTGATGATCATAACA 2023
Query 752 AGACTATTAACATGATCACTGAGCTTTTCACCTCTGG 788
|| | || |||||||||||||||||||||||||||||
Sbjct 2024 AGTCCATCAACATGATCACTGAGCTTTTCACCTCTGG 2060
Score = 75.0 bits (40), Expect = 2e-12
Identities = 54/60 (90%), Gaps = 3/60 (5%)
Strand=Plus/Plus
Query 1798 TCGAAAGATGAAGAAGCTGCAGGACAATCAATGAAGTCAGACATATCAGCAGACTATTAC 1857
||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 2962 TCGAAGGATGAAGAAGCT---GGAGAATCAATGAAGTCAGACATATCAGCAGACTACTAC 3018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84865065860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5