BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42000.1
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947504 jgi|Araly1|947504|scaffold_703733.1 852 0.0
Ahg947503 jgi|Araly1|947503|scaffold_703732.1 481 5e-135
> Ahg947504 jgi|Araly1|947504|scaffold_703733.1
Length=505
Score = 852 bits (461), Expect = 0.0
Identities = 492/507 (97%), Gaps = 2/507 (0%)
Strand=Plus/Plus
Query 81 ATCCCTCCGGTGAAAAAGACGATGTACGTAAGAGCACTTCCGACGACGGATGTGAATCGG 140
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTCTCCGGTG-AAAAGACGATGTACGTAAGAGCACTTCCGACGACGGATGTGAATCGA 59
Query 141 AACACAGAGTGGTTCACATATCCTGGTGTTTGGACTACTTATATTCTCATCCTCTTCTTC 200
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 AACACAGAGTGGTTCACATATCCAGGTGTTTGGACTACTTATATTCTCATCCTCTTCTTC 119
Query 201 TCTTGGCTCCTCGTTCTCTCCGTCTTCCATTGTTCTCCTGGCATCGCTTGGACCATTGTT 260
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTTGGCTCCTTGTTCTCTCCGTCTTCCATTGTTCTCCTGGCATCGCTTGGACCATTGTT 179
Query 261 CATCTCGCTCATTTCACCGTCACGTATCATTCCTTCCATTGGAAGAAGGGAACACCATTT 320
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 180 CATCTCGCTCATTTCACCGTCACGTATCATTCGTTTCATTGGAAGAAGGGAACACCGTTT 239
Query 321 GGAGATGATCAAGGAGTCTATAATAGATTGACTTGGTGGGAACAGATTGATAATGGCAAG 380
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTGATGATCAAGGAATCTATAATAGATTGACTTGGTGGGAACAGATTGATAATGGCAAA 299
Query 381 CAGCTTACACGTAATCGCAAATTTCTCACCGTTGTTCCTGTTGTCTTGTACTTGATAGCC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAGCTTACACGTAATCGCAAATTTCTCACCGTTGTTCCTGTTGTCTTGTACTTGATAGCC 359
Query 441 TCTCACACAACAGACTATCAGCACCCGATGCTCTTTCTCAACACACTGGCTGTATTTGTC 500
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 TCTCACACAACAGACTATCAGCACCCGATGCTCTTTCTCAACACACTGGCCGTATTTGTC 419
Query 501 ATGGTGGTTGCGAAATTCCCGCACATGCACAAGGTCCGCATATTTGGAATCAATGGAGAC 560
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGGTGGTCGCGAAATTTCCGCACATGCACAAGGTCCGCATATTTGGAATCAATGGAGAC 479
Query 561 CAATGaaaaaacttgagaaaacaaaga 587
|||||||||| ||||||||||||||||
Sbjct 480 CAATGAAAAA-CTTGAGAAAACAAAGA 505
> Ahg947503 jgi|Araly1|947503|scaffold_703732.1
Length=311
Score = 481 bits (260), Expect = 5e-135
Identities = 297/313 (95%), Gaps = 9/313 (3%)
Strand=Plus/Plus
Query 604 ATGCGAATCAGAGTATTTGGAATGTGGAATCCAACAACAAATGCCATCATCATCATTCAA 663
|||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 1 ATGCGAATCA-AGTATTTGGAATGTGGAATCCAACAACAAATG-C--CATCGTCATTCAA 56
Query 664 CATGTCTGTACTATACAGACATTGAATCCCTTAACCGGAG---AAAATGTGTTATTTGGT 720
| |||||||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 57 CTTGTCTGTACTATACAGACATCGAATCCC--AACCGGAGAAAAAAATGTGTTATTTGGT 114
Query 721 CACATCCCATCATCGCATATTCAAACCTTTCTACTCTTTGTTTGGGGCTTCTAATCAATT 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CACATCCCATCATCGCTTATTCAAACCTTTCTACTCTTTGTTTGGGGCTTCTAATCAATT 174
Query 781 CATATTTGATCTCTTTTGTGGTTCTCTTAGTTTCTTATTTGTATAATCCCAAAACTGGTT 840
|||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 175 CATATTTGATATCTTATGTGGTTGTCTTAGTTTCTTATTTGTATAATCCCAAAACTGGTT 234
Query 841 ACAACAGAAAGTTGTTTAGCGAGCAATCTAGGGTTTGAATGAATAGTTGGGGAAGATTTA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ACAACAGAAAGTTGTTTAGCGAGCAATCTAGGGTTTGAATGAATAGTTGGGGAAGATTTA 294
Query 901 TTTATATATACCG 913
|||||||||||||
Sbjct 295 TTTATATATACCG 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33853150296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5