BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42010.1
Length=2386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493784 jgi|Araly1|493784|fgenesh2_kg.7__3217__AT5G42010.1 3419 0.0
Ahg474884 jgi|Araly1|474884|fgenesh2_kg.2__14__AT1G64610.1 99.0 1e-19
> Ahg493784 jgi|Araly1|493784|fgenesh2_kg.7__3217__AT5G42010.1
Length=2298
Score = 3419 bits (1851), Expect = 0.0
Identities = 2104/2228 (94%), Gaps = 10/2228 (0%)
Strand=Plus/Plus
Query 1 ATGGGTACTCGAGGGAACGAGGAAGAGGAAGATTGGTTTTCTGATGCTCGTGAGGAGGTT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1 ATGGGTACTCGAGGGAACGAGGAAGAGGAAGATTGGTTTTGTGATGCTCGTGAAGAGGTT 60
Query 61 TCATCTGTTTCTGATTGTAACTCTGAAGTCGCCGATGACTTTGTTCAAGCAACTGGTGAT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TCATCTGTTTCTGATTGTAACTCTGAAGTCGCCGATGAATTTGTTCAAGCAACTGGTGAT 120
Query 121 TTAGATCTTTGGACTATGAATCCAGAGAGTGTTACTAACCGTAGACAAAAGTTTTTTCAA 180
|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 121 TTAGATCTCTGGACTATGAATCCAGAGAGTGTTACCAACCGTCGACAAAAGTTTTTTCAA 180
Query 181 TCTATGGGTTTTAGTTTCAAAAAACGAGACTTTGATCTTGATCTTGATCTGTTGGGAGAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTATGGGTTTTAGTTTCAAAAAACGAGACTTTGATCTTGATCTTGATCTGTTGGGAGAC 240
Query 241 TCTAGTTCCGACCATATTCCGGTTTCGAAACAGTTGACCTCTGTGTCTGAAACTGATCAC 300
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TCTAGTTCCGACCATATTCCGGTTTCGAAACAGTTGAACTCTGTGTCTGAAACTGATCAT 300
Query 301 GAGGAGGAAGAGAAGGAGGAGAAGTTGTTGAGGAATGAATCTACTTCCTCTGGATCCTCC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGAGGAAGAGAAGGAGGAGAAGTTGTTGAGGAATGAATCTACTTCCTCTGGATCCTCT 360
Query 361 GTTTCATCTTTCTCAACTGCATCTTTGGCTGAAGCATTTAGTTTCAGAGGTTCTTTTCAG 420
|||||||| | |||||| | ||||||||||| |||||||||||||||||||| |||| |
Sbjct 361 GTTTCATCAATGTCAACTTCTTCTTTGGCTGAGGCATTTAGTTTCAGAGGTTCATTTCTG 420
Query 421 AATCGTGCCAAGAACATTGATGATCAGATTTTGCTGACGAGAGACTATTCAAGTAATAGT 480
|||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 421 AATCGTGCCAAGAATATAGATGATCAGATTTTGCTGACAAGAGATTATTCCAGTAATAGC 480
Query 481 AGTAGCATTGCTGAGGGATTGAGTGAATCTGATTCGAGTAGGTTTGATAGCTATGGAGAT 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 AGTAGCATTGCTGAGGGATTGAGTGAATCTGGTTCGAGTAGGTTTGATAGCTATGGAGAT 540
Query 541 TTACCGAACTCTCCAATGAGTCGTTATGAAGAATCGCCTAAAAAAGGAGCTAAAGGGTGG 600
| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGCAGAACTCTCCAATGAGTCATTATGAAGAATCGCCTAAAAAAGGAGCTAAAGGGTGG 600
Query 601 TTAAAGAAGTTAGGTGTGTTAACTCATGTTCTTGACAAAACTGAAGAGTGCACTGATGGT 660
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 ATAAAGAAGTTAGGTGTGTTAACTCATATTCTTGACAAAACTGAAGAGTGCACTGATGGT 660
Query 661 GAGTCAACGAGATCATCGATACGGAGGCAATTAACTCGAGTTCAGTCTTTTAAGAAGCAA 720
||||||| | |||||||||||||||| ||||||||| ||||||| || ||||| |||||
Sbjct 661 GAGTCAATGGGATCATCGATACGGAGACAATTAACTAGAGTTCAATCGTTTAAAAAGCAG 720
Query 721 TTCAAGGAGCTTTCGTCTCTGTGTGTCGGACAAGAGTTCTCTGCGCATGATGGATCCATA 780
|||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 721 TTCAAGGAGCTTTCGTCTCTTTGTATCGGACAGGAGTTCTCTGCGCATGATGGATCCATT 780
Query 781 GTAGTGATGAAGTTTTCTCATGATGGGAAGTACTTAGCTAGTGCTGGTGAAGATTGTGTT 840
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTAGTTATGAAGTTTTCGCATGATGGGAAGTACTTAGCTAGTGCTGGTGAAGATTGTGTT 840
Query 841 GTGCGAGTGTGGAACATAATTGAAGATGAGAGAAGGGACAACGAGTTTGAAGTGGCTGAG 900
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||
Sbjct 841 GTGCGAGTGTGGAACATAACGGAAGACGAGAGAAGAGACAACGAGTTTGAAGTGGCGGAG 900
Query 901 TCTGATTCAAGCTGTGTTTACTTTGGAATGAATGACAAGTCACAGATTGAGCCTCTCAAG 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGATTCAAGCTGTGTCTACTTTGGAATGAATGACAAGTCACAGATTGAGCCTCTCAAG 960
Query 961 ACTGAGAATGAGAAGATCGAAAAGAGCAGAGGATTGTTGAGGAAGAAGTCAGAATCGACT 1020
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 ACTGAGAATGAGAAGATCGAAAAGAGCAGAAGATTGTTGAGGAAGAAGTCAGAATCGACT 1020
Query 1021 TGCGCTGTGTTGCCTTCAAAAGTCTTT-AGTATATCTGAAACCCCGCAACACGAGTTCCG 1079
|||||||||||||| |||||||| ||| ||||||||||||||||| || |||||||||||
Sbjct 1021 TGCGCTGTGTTGCCCTCAAAAGT-TTTCAGTATATCTGAAACCCCTCAGCACGAGTTCCG 1079
Query 1080 AGGACATACTGGTGAAATCTTGGATCTTTCATGGTCGGAGAAAGGGTTTCTACTGTCATC 1139
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 AGGACATACGGGTGAAATCTTGGATCTTTCTTGGTCGGAGAAAGGGTTTCTACTGTCATC 1139
Query 1140 TTCCGTGGACGAGACTGTTCGTTTGTGGCGAGTTGGTTCTTCTGATGAATGTATCAGAGT 1199
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCAGTGGATGAGACTGTTCGGTTGTGGCGAGTTGGTTCTTCTGATGAATGTATCAGAGT 1199
Query 1200 TTTCTCTCATAAGAGTTTTGTGACTTGTGTGGCATTCAATCCTGTGGATGACAATTACTT 1259
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1200 TTTCTCTCATAAGAGTTTTGTGACTTGTGTGGCATTTAATCCTGTGGATGACAATTACTT 1259
Query 1260 TATAAGCGGATCGATTGATGGCAAAGTTCGTATATGGGATGTGTCTCAGTTCCGAGTTGT 1319
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1260 TATAAGCGGATCGATTGATGGCATAGTTCGTATATGGGATGTGTCTCATTTCCGAGTTGT 1319
Query 1320 TGACTATACTGATATAAGACAGATTGTTACAGCTTTGTGCTATCGCCCTGATGGTAAGGG 1379
||||||||| ||||||||| ||||||||||||| ||||||||| |||||||| ||||||
Sbjct 1320 TGACTATACAGATATAAGAGAGATTGTTACAGCCTTGTGCTATTACCCTGATGCTAAGGG 1379
Query 1380 TGCAGTAGTAGGTTCTATGACTGGCGAGTGTCGCTTTTACCATACAACTGATAACCAGCT 1439
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 TGCTGTTGTAGGTTCTATGACTGGCGAATGTCGCTTTTACCATACAACTGATAACCAGCT 1439
Query 1440 GCAACTGGATAGAGATATCAGTTTACATGGGAAGAAGAAGGTTCCTAACAAAAGAATCAC 1499
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GCAACTGGATAGAGAGATCAGTTTACATGGGAAGAAGAAGGTTCCTAACAAAAGAATCAC 1499
Query 1500 CGGTTTTCAGTTTTTCCCCGGAGATTCAGACAAAGTGATGGTTACTTCTGCTGATTCTCA 1559
||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1500 CGGTTTTCAGTTTTTTCCTGGTGATTCGGACAAAGTGATGGTTACTTCTGCTGATTCTCA 1559
Query 1560 AATACGAATAATCTGCGGTGTGGATACAATCTGCAAGCTTAAGAAAGCTTCAAGTCTTCG 1619
| | |||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1560 ACTCCGAATAATAAGCGGAGTGGATACAATCTGCAAGCTTAAAAAATCTTCAAGTCTTCG 1619
Query 1620 AACAACACTGATGAGTCCAACATTTGCTTCATTCACATCTGATGGGAAACACATTGTCTC 1679
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1620 AACAACTCTGATGAGTCCAACATTTGCTTCATTCACGTCTGATGGGAAACACATTGTCTC 1679
Query 1680 AACAATAGAAGAGTCAGGCATTCATGTTTGGGACTTCTCTCAACCCAACAAAAAGGCATC 1739
|||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 1680 AACAATAGAAGACTCAGGCATTCATGTTTGGGACTACTCTCAACCAAACAAAAAGGTGTC 1739
Query 1740 TTCTCAGAAACCAAAGACCATCAGATCTTATGAGGGATTTCTATCGCGAAATGTGTCTGT 1799
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1740 TTCTCAGAAACCAAAGACCATCAGATCTTATGAGGGATTTCTCTCACAAAATGTGTCTGT 1799
Query 1800 GGCCATACCTTGGCTAGGCCAGGGGAAGGAGGACAGTATCATAGCAGATTTGGAAAAAAG 1859
||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 1800 GGCCATACCTTGGCTAGGCCAGGGGAAGGAGGAAACTATCATAGCCGATTTGGAAAAAAG 1859
Query 1860 TTTTGCTCATTTCCCTGTTCCCTTGGACTATTTCTCTCCAATGAAAGGAGCAACAACATG 1919
||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1860 TTTTGCTCATTTCCCGGCTCCCATGGACTATTTCTCTCCAATGAAAGGAGCAACTACATG 1919
Query 1920 GCCGGAAGAGAAGCTTGGAGTAGTAGCAGGTACGGCTGCAGCAGCGGTTTCAGCTACAGT 1979
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1920 GCCGGAAGAGAAGCTTGGAGTAGTAGCAGGTTCGGCTGCAGCAGCGGTTTCAGCAACAGT 1979
Query 1980 CAGCAGCAGATCTAAGTTGAGGCTCTTAAAAAGTGTGTGCCAGAACGTTCATGGCTCGAC 2039
|||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1980 CAGCAGCAGATCCAAGTTGAGGCTCTTAAAGAGTGTGTGCCAGAACGTTAATGGCTCGAC 2039
Query 2040 GCCTCACCTGTGGGGGCTTGTGATTGTGACTGCAACGTGGGACGGTAGTATCAGAGTATT 2099
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||
Sbjct 2040 GCCTCACCTGTGGGGGCTTGTGATTGTGACAGCAACTTGGGACGGTATTATCAGAGTGTT 2099
Query 2100 CCATAACTACGGTTTACCAATTCGAGTCTAAAGACAGAATAAGCAGCGCATGTAGAT-TT 2158
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 2100 CCATAACTACGGTTTACCAATTCGAGTCTAAAGACCGAA---GCAGCGCATGTAGAGATT 2156
Query 2159 TGAAGGGAA-TTGTGGCAGTGTTTAGTGCAGCATTCTTTCATTTTGTTTGGAAG-TCACT 2216
||||| || ||||||||||||| ||||||||||||||| |||||||||||| | |||||
Sbjct 2157 TGAAGAAAAATTGTGGCAGTGTT-AGTGCAGCATTCTTTGATTTTGTTTGGA-GCTCACT 2214
Query 2217 TAGCCTTA 2224
||||||||
Sbjct 2215 TAGCCTTA 2222
Score = 97.1 bits (52), Expect = 5e-19
Identities = 74/83 (89%), Gaps = 7/83 (8%)
Strand=Plus/Plus
Query 2249 GAACTAAGTGGGTCTCTTTGCATTTGCTTTTAATTGGTACTATTTGTAATTGTATAGTGT 2308
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 2223 GAACTAAGTGGGTCTCTTTGCATTTGCTTTTAATTGGTACGA---GTATTTGTATAGTG- 2278
Query 2309 GAGATCTATTtgtgtgtgtgtgt 2331
| |||||||||||||||||||
Sbjct 2279 -A--TCTATTTGTGTGTGTGTGT 2298
> Ahg474884 jgi|Araly1|474884|fgenesh2_kg.2__14__AT1G64610.1
Length=2284
Score = 99.0 bits (53), Expect = 1e-19
Identities = 79/92 (86%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 2040 GCCTCACCTGTGGGGGCTTGTGATTGTGACTGCAACGTGGGACGGTAGTATCAGAGTATT 2099
|||||||||||||||||||||||||||||| || || ||||| || || || ||||||||
Sbjct 2053 GCCTCACCTGTGGGGGCTTGTGATTGTGACAGCGACTTGGGATGGAAGGATTAGAGTATT 2112
Query 2100 CCATAACTACGGTTTACCAATTCGAGTCTAAA 2131
||| ||||| ||||| || |||| |||||||
Sbjct 2113 CCACAACTATGGTTTGCCTGTTCGGGTCTAAA 2144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89892978200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5