BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42020.1
Length=2387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493781 jgi|Araly1|493781|fgenesh2_kg.7__3214__AT5G42020.1 3653 0.0
Ahg924468 jgi|Araly1|924468|scaffold_200029.1 2580 0.0
> Ahg493781 jgi|Araly1|493781|fgenesh2_kg.7__3214__AT5G42020.1
Length=2359
Score = 3653 bits (1978), Expect = 0.0
Identities = 2269/2400 (95%), Gaps = 58/2400 (2%)
Strand=Plus/Plus
Query 1 AGTTAAATTTCTTCGTCTTCCATAAAAAGCGACTACTTCACCATCACCTTCGGGCACTGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTAAATTTCTTCGTCTTCCATAAAAAGCGACTACTTCACCATCACCTTCGGGCACTGG 60
Query 61 ACCTATTTAAGCATC-CTAACTTCTTCTTCAAAGCTTAAAAACCAGAA-AACAAAAGGAA 118
||||||||||||||| | ||||||||| | | | |||||||| || |||| |||
Sbjct 61 ACCTATTTAAGCATCAC-AACTTCTTC-T---A-C-----AACCAGAAGAA-AAAAAGAA 108
Query 119 GCTCTCTGTTCAAATCAA--------AAAGAGAGATCGTACGCAAAAGTTTCCGATATGG 170
|||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 109 GCTCTCTGTTCAAAACAAGTTTCTTCGAAGAGAGATCGTACGCAAAAGTTTCCGATATGG 168
Query 171 CTCGCTCGTTTGGAGCAAACAGCACTGTTGTGCTT-GCGATCATCTTCTTCGGATGTTTA 229
|||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 169 CTCGCTCGTTCGGAGCAAACGGCACTGTTGTG-TTGGCGATCATCTTCTTCGGATGTTTA 227
Query 230 TTTGCGTTTTCCACTGCAAAAGAAGAGGCTACGAAGTTAGGATCAGTTATTGGGATAGAT 289
||||||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 228 TTTGCGTTTTCTACTGCAAAAGAAGAGGCTACGAAGTTGGGAACAGTTATAGGGATAGAT 287
Query 290 CTTGGTACCACTTACTCTTGTGTTGGTGTTTACAAGAATGGTCATGTTGAAATTATTGCC 349
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 288 CTTGGTACCACTTACTCTTGTGTTGGTGTTTACAAGAATGGCCATGTTGAAATTATAGCC 347
Query 350 AATGACCAAGGAAACCGTATTACACCTTCATGGGTTGGTTTTACTGACTCTGAAAGGCTC 409
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 348 AATGACCAAGGAAACCGTATTACACCTTCATGGGTTGGTTTTACTGATTCTGAGAGACTC 407
Query 410 ATTGGTGAGGCTGCTAAGAATCAGGCGGCTGTTAATCCTGAGAGGACTGTCTTCGACGTT 469
|||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 408 ATTGGTGAGGCTGCTAAGAATCAGGCTGCTGTTAATCCAGAGAGGACTATCTTCGACGTC 467
Query 470 AAGAGATTGATCGGGCGAAAATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTA 529
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AAGAGATTGATCGGCCGAAAATTTGAGGACAAGGAGGTTCAAAAGGACAGGAAACTTGTA 527
Query 530 CCTTACCAGATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT 589
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CCTTACCAAATTGTGAACAAGGATGGTAAGCCATACATTCAAGTCAAGATCAAGGATGGT 587
Query 590 GAGACTAAGGTTTTCAGTCCTGAGGAGATCAGTGCCATGATTCTGACTAAGATGAAGGAG 649
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GAGACTAAGGTATTCAGTCCTGAGGAGATCAGTGCCATGATTCTGACTAAGATGAAGGAG 647
Query 650 ACAGCCGAAGCCTACCTTGGAAAGAAAATCAAGGACGCTGTTGTCACTGTTCCAGCTTAC 709
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ACAGCCGAAGCTTACCTTGGAAAGAAAATCAAGGACGCTGTTGTCACTGTTCCAGCTTAC 707
Query 710 TTCAATGATGCTCAAAGGCAAGCTACCAAGGATGCCGGTGTTATTGCTGGGCTCAATGTT 769
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TTCAACGATGCACAAAGGCAAGCTACCAAGGATGCCGGTGTTATTGCTGGGCTCAATGTT 767
Query 770 GCTAGAATCATCAACGAACCTACTGCTGCTGCTATTGCCTACGGTCTTGATAAGAAGGGT 829
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 768 GCGAGAATCATCAACGAACCTACTGCTGCTGCTATTGCCTACGGTCTTGACAAGAAGGGT 827
Query 830 GGTGAGAAGAACATCCTTGTATTTGACCTTGGTGGTGGTACTTTTGATGTCAGTGTCTTG 889
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 828 GGTGAGAAGAACATCCTTGTCTTTGATCTTGGTGGTGGTACTTTTGATGTCAGTGTCTTG 887
Query 890 ACCATTGATAACGGAGTGTTTGAGGTTCTCTCCACAAATGGTGACACTCACTTGGGAGGT 949
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 888 ACCATTGATAACGGAGTGTTCGAGGTTCTCTCCACAAATGGTGACACTCACTTGGGAGGT 947
Query 950 GAGGACTTTGACCACAGGATCATGGAGTACTTCATCAAGTTAATTAAGAAGAAGCACCAG 1009
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 948 GAGGACTTTGACCACAGGATCATGGAGTACTTCATCAAGTTGATTAAGAAGAAGCACCAG 1007
Query 1010 AAGGACATCAGCAAGGACAACAAGGCTCTTGGTAAGCTCCGAAGGGAATGTGAGAGGGCA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AAGGACATCAGCAAGGACAACAAGGCTCTTGGTAAGCTCCGAAGGGAATGTGAGAGGGCA 1067
Query 1070 AAGAGAGCTCTAAGCAGTCAGCACCAAGTCCGTGTAGAGATTGAGTCACTCTTTGATGGT 1129
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1068 AAGAGAGCTCTAAGTAGTCAGCACCAAGTCCGTGTAGAGATTGAGTCTCTCTTTGATGGT 1127
Query 1130 GTTGATTTATCTGAGCCACTCACCAGAGCTCGTTTCGAGGAGCTTAACAATGATTTGTTC 1189
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1128 GTTGATTTATCTGAGCCACTCACCAGAGCTCGTTTCGAGGAGCTGAACAATGATTTGTTC 1187
Query 1190 AGGAAGACCATGGGACCTGTGAAGAAGGCCATGGATGATGCCGGTCTACAGAAGAGCCAG 1249
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1188 AGGAAGACCATGGGACCTGTGAAGAAGGCCATGGATGATGCTGGTCTACAGAAGAGCCAG 1247
Query 1250 ATCGATGAGATTGTCCTTGTTGGTGGAAGCACCAGGATCCCAAAGGTTCAGCAACTGTTG 1309
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 ATTGATGAGATTGTCCTTGTTGGTGGAAGCACCAGGATCCCAAAGGTTCAGCAACTGTTG 1307
Query 1310 AAGGACTTCTTTGAAGGTAAAGAGCCAAACAAGGGTGTGAACCCCGACGAGGCTGTTGCC 1369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AAGGACTTCTTTGAAGGTAAAGAGCCAAACAAGGGTGTGAACCCCGACGAGGCTGTTGCT 1367
Query 1370 TATGGTGCTGCTGTTCAGGGTGGTATTTTGAGCGGAGAAGGCGGTGATGAGACCAAAGAT 1429
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TATGGTGCTGCTGTTCAAGGTGGTATTTTGAGCGGAGAAGGCGGTGATGAGACCAAAGAT 1427
Query 1430 ATCCTTCTTCTTGATGTTGCGCCACTCACTTTAGGTATCGAGACTGTAGGAGGAGTGATG 1489
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1428 ATCCTTCTTCTTGATGTTGCGCCACTCACTTTGGGAATCGAGACTGTAGGAGGAGTGATG 1487
Query 1490 ACAAAGTTGATCCCAAGAAACACGGTTATTCCAACCAAGAAATCTCAGGTTTTCACAACG 1549
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 ACAAAGCTGATCCCGAGAAACACGGTTATTCCAACCAAGAAATCTCAGGTTTTCACAACG 1547
Query 1550 TACCAAGACCAGCAGACCACCGTCTCCATTCAGGTCTTTGAAGGTGAAAGAAGTCTCACC 1609
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1548 TACCAAGACCAGCAGACCACCGTCTCCATTCAAGTCTTTGAAGGTGAACGAAGTCTCACA 1607
Query 1610 AAGGACTGCAGGCTACTCGGGAAATTCGACCTCACTGGAGTCCCACCGGCCCCAAGAGGA 1669
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1608 AAGGACTGCAGGCTACTCGGGAAATTCGACCTCACCGGAGTTCCACCAGCCCCAAGAGGA 1667
Query 1670 ACCCCTCAAATCGAGGTCACATTTGAAGTGGACGCCAACGGTATTCTTAATGTGAAAGCA 1729
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1668 ACCCCTCAAATCGAGGTCACATTCGAAGTGGACGCCAACGGTATCCTTAATGTGAAAGCA 1727
Query 1730 GAGGACAAGGCGAGTGGTAAATCAGAGAAGATTACAATCACAAACGAGAAGGGTCGTCTG 1789
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 GAGGACAAGGCGAGTGGAAAATCAGAGAAGATTACAATCACAAACGAGAAGGGTCGTCTG 1787
Query 1790 AGCCAAGAAGAGATTGACCGGATGGTGAAGGAGGCAGAGGAGTTTGCAGAGGAAGACAAG 1849
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1788 AGCCAAGAAGAGATTGACCGGATGGTAAAGGAGGCAGAGGAGTTTGCAGAGGAGGACAAG 1847
Query 1850 AAGGTGAAGGAGAAGATCGACGCCAGGAATGCCCTGGAGACATACGTGTACAACATGAAG 1909
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1848 AAGGTGAAGGAGAGGATCGACGCCAGGAATGCCTTGGAGACATACGTGTACAACATGAAG 1907
Query 1910 AACCAAGTGAGCGACAAGGACAAGCTTGCAGACAAATTGGAAGGAGATGAGAAGGAGAAG 1969
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1908 AACCAAGTGAGCGACAAGGACAAGCTTGCAGACAAATTGGAAGGAGATGAAAAGGAGAAG 1967
Query 1970 ATAGAAGCAGCGACGAAAGAGGCCTTGGAGTGGCTCGACGAGAACCAAAACTCAGAGAAA 2029
|| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1968 ATTGAAGCAGCAACCAAAGAGGCCTTGGAGTGGCTAGACGAGAACCAAAACTCAGAGAAA 2027
Query 2030 GAAGAGTACGACGAGAAGCTCAAGGAGGTAGAGGCAGTGTGTAACCCAATCATCACAGCA 2089
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2028 GAAGAGTACGACGAGAAGCTCAAGGAGGTAGAAGCAGTGTGTAACCCAATCATCACGGCA 2087
Query 2090 GTTTACCAGAGATCAGGCGGAGCACCAGGTGCAGGAGGAGAATCATCGACTGAGGAGGAA 2149
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 2088 GTTTACCAGAGATCTGGCGGAGCACCAGGTGCAGGAGGAGAATCAGCGACTGAGGAAGAA 2147
Query 2150 GATGAGTCTCACGATGAGCTCTAGATGTCTTCT-----GTTATTGTTAATTTATTAAACC 2204
||||||||||||||||||||||||||||||| | ||||||||| |||| |||||||
Sbjct 2148 GATGAGTCTCACGATGAGCTCTAGATGTCTTTTTTTTTGTTATTGTTGATTTCTTAAACC 2207
Query 2205 AT-AGAGACAAGTTTTGAGGATGAAACGTCGtttttgttttttgtatttggtttcctttt 2263
|| ||||||||||||||||||||||| ||| ||||| |||| || ||| |
Sbjct 2208 ATTAGAGACAAGTTTTGAGGATGAAAGGTC-TTTTT-TTTT--GT-TTT--T-------- 2252
Query 2264 tcttatggatttttAGGAAAGGGGAGAGATTAAGTAGCGTCCCTTCTTTAGTCTCCCTGG 2323
|||||||||||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 2253 ----ATGGATTTTTAGGAAAGGAGAGAGATTAAGTAGTGTCCCTTCTGTAGTCTCCCT-- 2306
Query 2324 ACGTTCTCTTTATGTTCATCTGATAACTTTACTTCTTCATAACAAATACCTTTTTTCTAT 2383
| |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 2307 ---T-CTCTTTATGTTCATCTGATACCTTTACTTC---ATAACAAATACGTTTTTTCTAT 2359
> Ahg924468 jgi|Araly1|924468|scaffold_200029.1
Length=2030
Score = 2580 bits (1397), Expect = 0.0
Identities = 1790/1982 (90%), Gaps = 17/1982 (1%)
Strand=Plus/Plus
Query 200 GTGCTTGCGATCATCTTCTTCGGATGT-TTATTTGCGTTTTCCACTGCAAAAGAAGAGGC 258
|||||||||||| |||| || |||||| || |||||| |||| | ||| |||||||||||
Sbjct 39 GTGCTTGCGATCGTCTTGTTAGGATGTCTT-TTTGCGATTTCAATTGCTAAAGAAGAGGC 97
Query 259 TACGAAGTTAGGATCAGTTATTGGGATAGATCTTGGTACCACTTACTCTTGTGTTGGTGT 318
||||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 98 TACGAAGTTGGGATCTGTTATAGGAATTGATCTTGGTACCACTTACTCTTGTGTTGGTGT 157
Query 319 TTACAAGAATGGTCATGTTGAAATTATTGCCAATGACCAAGGAAACCGTATTACACCTTC 378
|||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 158 TTACAAAAATGGCCATGTTGAGATCATTGCCAATGACCAAGGTAACCGTATTACACCTTC 217
Query 379 ATGGGTTGGTTTTACTGACTCTGAAAGGCTCATTGGTGAGGCTGCTAAGAATCAGGCGGC 438
||||| ||||| || || ||||| ||| | |||||||| ||||||||||||||||||||
Sbjct 218 CTGGGTGGGTTTCACCGATTCTGAGAGGTTGATTGGTGAAGCTGCTAAGAATCAGGCGGC 277
Query 439 TGTTAATCCTGAGAGGACTGTCTTCGACGTTAAGAGATTGATCGGGCGAAAATTTGAGGA 498
||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 278 TGTCAATCCAGAGAGGACTGTCTTCGACGTCAAGAGATTGATCGGGAGAAAATTCGAGGA 337
Query 499 CAAGGAGGTTCA-AAAGGACAGGAAACTTGTACCTTACCAGATTGTGAACAAGGATGGTA 557
||| ||||| || ||| |||| ||||||||| |||||| |||||||||||||||| || |
Sbjct 338 CAAAGAGGTGCAGAAA-GACATGAAACTTGTTCCTTACAAGATTGTGAACAAGGAAGGCA 396
Query 558 AGCCATACATTCAAGTCAAGATCAAGGATGGTGAGACTAAGGTTTTCAGTCCTGAGGAGA 617
|||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 397 AGCCTTACATTCAAGTCAAGATCAAGGATGGTGAGACCAAGGTTTTCTCTCCTGAGGAGA 456
Query 618 TCAGTGCCATGATTCTGACTAAGATGAAGGAGACAGCCGAAGCCTACCTTGGAAAGAAAA 677
|||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||
Sbjct 457 TCAGTGCCATGATTCTTACTAAGATGAAGGAGACTGCTGAAGCATACCTTGGCAAGAAAA 516
Query 678 TCAAGGACGCTGTTGTCACTGTTCCAGCTTACTTCAATGATGCTCAAAGGCAAGCTACCA 737
||||||||||||||||||||||||||||||||||||||||||| || ||||| || || |
Sbjct 517 TCAAGGACGCTGTTGTCACTGTTCCAGCTTACTTCAATGATGCCCAGAGGCAGGCCACAA 576
Query 738 AGGATGCCGGTGTTATTGCTGGGCTCAATGTTGCTAGAATCATCAACGAACCTACTGCTG 797
||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 577 AGGATGCTGGTGTTATCGCTGGGCTCAATGTTGCTAGAATCATCAACGAACCCACTGCTG 636
Query 798 CTGCTATTGCCTACGGTCTTGATAAGAAGGGTGGTGAGAAGAACATCCTTGTATTTGACC 857
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 637 CTGCTATTGCCTATGGTCTGGATAAGAAGGGTGGTGAGAAGAACATCCTTGTCTTTGACC 696
Query 858 TTGGTGGTGGTACTTTTGATGTCAGTGTCTTGACCATTGATAACGGAGTGTTTGAGGTTC 917
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 697 TTGGTGGTGGTACTTTTGATGTCAGTGTCTTGACCATTGATAATGGAGTGTTTGAGGTTC 756
Query 918 TCTCCACAAATGGTGACACTCACTTGGGAGGTGAGGACTTTGACCACAGGATCATGGAGT 977
|||||||||||||||| || |||||||||||||||||||||||||||||| ||||||| |
Sbjct 757 TCTCCACAAATGGTGATACCCACTTGGGAGGTGAGGACTTTGACCACAGGGTCATGGATT 816
Query 978 ACTTCATCAAGTTAATTAAGAAGAAGCACCAGAAGGACATCAGCAAGGACAACAAGGCTC 1037
| ||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 817 ATTTCATCAAGCTGATCAAGAAGAAGCACCAGAAGGACATCAGCAAGGACTACAAGGCTC 876
Query 1038 TTGGTAAGCTCCGAAGGGAATGTGAGAGGGCAAAGAGAGCTCTAAGCAGTCAGCACCAAG 1097
| ||||| |||||||||||||| ||||| || ||||||||||| ||||| ||||||||||
Sbjct 877 TGGGTAAACTCCGAAGGGAATGCGAGAGAGCCAAGAGAGCTCTTAGCAGCCAGCACCAAG 936
Query 1098 TCCGTGTAGAGATTGAGTCACTCTTTGATGGTGTTGATTTATCTGAGCCACTCACCAGAG 1157
||||||| ||||||||||| ||||| ||||| |||||| |||||||||||||||||||
Sbjct 937 TCCGTGTTGAGATTGAGTCCCTCTTCGATGGCACTGATTTCTCTGAGCCACTCACCAGAG 996
Query 1158 CTCGTTTCGAGGAGCTTAACAATGATTTGTTCAGGAAGACCATGGGACCTGTGAAGAAGG 1217
| |||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 997 CCCGTTTCGAGGAGCTGAACAATGACTTGTTCAGAAAGACAATGGGACCTGTGAAGAAGG 1056
Query 1218 CCATGGATGATGCCGGTCTACAGAAGAGCCAGATCGATGAGATTGTCCTTGTTGGTGGAA 1277
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1057 CCATGGATGATGCTGGTCTACAGAAGAGCCAGATCGATGAGATTGTACTTGTTGGTGGAA 1116
Query 1278 GCACCAGGATCCCAAAGGTTCAGCAACTGTTGAAGGACTTCTTTGAAGGTAAAGAGCCAA 1337
| || |||||||||||||| || ||||| |||||||||||||||||||| ||||||||||
Sbjct 1117 GTACTAGGATCCCAAAGGTACAACAACTATTGAAGGACTTCTTTGAAGGGAAAGAGCCAA 1176
Query 1338 ACAAGGGTGTGAACCCCGACGAGGCTGTTGCCTATGGTGCTGCTGTTCAGGGTGGTATTT 1397
||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 1177 ACAAGGGTGTGAACCCCGATGAGGCTGTTGCTTATGGTGCTGCCGTTCAGGGAGGTATAT 1236
Query 1398 TGAGCGGAGAAGGCGGTGATGAGACCAAAGATATCCTTCTTCTTGATGTTGCGCCACTCA 1457
||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1237 TGAGCGGAGAAGGTGGTGATGAAACCAAAGATATCCTTCTTCTGGACGTTGCGCCACTCA 1296
Query 1458 CTTTAGGTATCGAGACTGTAGGAGGAGTGATGACAAAGTTGATCCCAAGAAACACGGTTA 1517
|||| ||||| |||||||| |||||||||||||||||| ||||||| ||||||||||| |
Sbjct 1297 CTTTGGGTATTGAGACTGTCGGAGGAGTGATGACAAAGCTGATCCCGAGAAACACGGTCA 1356
Query 1518 TTCCAACCAAGAAATCTCAGGTTTTCACAACGTACCAAGACCAGCAGACCACCGTCTCCA 1577
|||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 1357 TTCCAACCAAGAAATCTCAGGTGTTCACGACATACCAAGACCAGCAGACCACTGTCTCCA 1416
Query 1578 TTCAGGTCTTTGAAGGTGAAAGAAGTCTCACCAAGGACTGCAGGCTACTCGGGAAATTCG 1637
| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 1417 TCCAGGTCTTTGAAGGTGAACGAAGTCTCACCAAAGACTGCAGGCTGCTCGGGAAATTCG 1476
Query 1638 ACCTCACTGGAGTCCCACCGGCCCCAAGAGGAACCCCTCAAATCGAGGTCACATTTGAAG 1697
|||||| |||| ||||||| || ||||| || |||||||| ||||| |||||||| ||||
Sbjct 1477 ACCTCAATGGAATCCCACCAGCTCCAAGGGGGACCCCTCAGATCGAAGTCACATTCGAAG 1536
Query 1698 TGGACGCCAACGGTATTCTTAATGTGAAAGCAGAGGACAAGGCGAGTGGTAAATCAGAGA 1757
|||| |||||||||||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 1537 TGGATGCCAACGGTATTCTCAACGTGAAAGCAGAGGACAAGGCAAGTGGGAAATCAGAGA 1596
Query 1758 AGATTACAATCACAAACGAGAAGGGTCGTCTGAGCCAAGAAGAGATTGACCGGATGGTGA 1817
|||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1597 AGATCACAATCACGAATGAGAAGGGACGTCTGAGCCAAGAAGAGATTGAACGGATGGTGA 1656
Query 1818 AGGAGGCAGAGGAGTTTGCAGAGGAAGACAAGAAGGTGAAGGAGAAGATCGACGCCAGGA 1877
|||||||||||||||||||||| |||||||||||||| ||||||| ||| || || ||||
Sbjct 1657 AGGAGGCAGAGGAGTTTGCAGATGAAGACAAGAAGGTAAAGGAGAGGATTGATGCAAGGA 1716
Query 1878 AT-GCCCTGGAGACATACGTGTACAACATGAAGAACCAAGTGAGCGACAAGGACAAGCTT 1936
| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1717 ACAGCC-TGGAGACATACGTGTACAACATGAAGAACCAAGTGAACGACAAGGACAAGCTT 1775
Query 1937 GCAGACAAATTGGAAGG-AGATGAGAAGGAGAAGATAGAAGCAGCGACGAAAGAGGC-CT 1994
|||||||||||||| || |||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 1776 GCAGACAAATTGGA-GGCAGATGACAAGGAGAAGATCGAAGCCGCGACGAAAGAGGCTCT 1834
Query 1995 TGGAGTGGCTCGACGAGAACCAAAACT-CAGAGAAAGAAGAGTACGACGAGAAGCTCAAG 2053
| |||||||||| || ||||| || | ||||||||||||| ||||| ||||||||||||
Sbjct 1835 AG-AGTGGCTCGATGAAAACCAGAA-TGCAGAGAAAGAAGATTACGATGAGAAGCTCAAG 1892
Query 2054 GAGGTAGAGGCAGTGTGTAACCCAATCATCACAGCAGTTTACCAGA-GATCAGGCGGAGC 2112
||||| ||||| || ||||| || |||||||| || |||||||| | | || || || ||
Sbjct 1893 GAGGTTGAGGCTGTTTGTAATCCGATCATCACTGCGGTTTACCAAAAG-TCGGGTGGGGC 1951
Query 2113 ACCAGGTGCAGGAGGAGAATCATCGACTGAGGAGGAAGATGAGTCTCACGATGAGCTCTA 2172
||| || | ||| | | | | ||||| || ||||| ||||| |||||||||||||||||
Sbjct 1952 ACC-GG-G-AGGTGAATCAGCTTCGACAGATGAGGACGATGAATCTCACGATGAGCTCTA 2008
Query 2173 GA 2174
||
Sbjct 2009 GA 2010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89931068445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5