BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42030.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493780 jgi|Araly1|493780|fgenesh2_kg.7__3213__AT5G42030.1 1565 0.0
> Ahg493780 jgi|Araly1|493780|fgenesh2_kg.7__3213__AT5G42030.1
Length=969
Score = 1565 bits (847), Expect = 0.0
Identities = 939/981 (96%), Gaps = 16/981 (2%)
Strand=Plus/Plus
Query 20 TGTGTGTATAGTGTCTCCACTTGGATCTTTCTTACTTACTCCATTATCTTCTTCT-C-TC 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 TGTGTGTATAGTGTCTCCACTTGGATCTTTCTTACTTACTCCATTATCTTCTTCTCCTTC 60
Query 78 TCT-T-TCCCTCATCTCATTAATGGCGAGCTCTACATCTTTAGCGATAGTTCTTCATCAA 135
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTCTCCCTCATCTCATTAATGGCGAGCTCTACATCTTTAGCGATAGTTCTTCATCAA 120
Query 136 TCTTCCAATCATGACGAACTCTTCATGAAGCAAACTCTTCAATTCTCAGAAACCCTCAAG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TCTTCCAATCATGACGAACTCTTCATGAAGCAAACTCTTCAATTCTCAGAAACTCTCAAG 180
Query 196 GATTTAAAGAATCTGCGGAAACAGTTATACTCAGCAGCTGAGTACTTCGAAACATCTTAT 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATTTAAAGAATCTGCGGAAACAGTTATACTCAGCAGCTGAGTACTTCGAAACATCTTAT 240
Query 256 GGCAAAGCAGAACACAAAGAAACAGTGATAGAGACGTTGAAAGAGTATGCAGCAAAGGCA 315
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GGCAAAGAAGAACACAAAGAAACAGTGATAGAGACATTGAAAGAGTATGCAGCAAAGGCA 300
Query 316 GTAGTGAACACAGTGGATCATCTTGGTTCTGTCTCTGACAAATTCAACTCTTTTCTCTCT 375
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GTAGTGAACACAGTGGATCATCTTGGTTTTGTCTCTGACAAATTCAACTCTTTTCTCTCT 360
Query 376 GATAACTCAACTCATTTCTCCACCACTCATCTTCGTTTATCTTCTCTTGAACAAAGGATG 435
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 361 GATAACTCAACCCATTTCTCCACCACTCATCTCCGTTTATCTTCACTTGAACAAAGGATG 420
Query 436 AGACTATGCAGAGATTACATGGGGAAGAGTGGCACTCATCAGCATTTGCTTCTATTTCAA 495
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGACTATGCAGAGATTACATGGGGAAGAGTGGGACTCATCAGCATTTGCTTCTATTTCAA 480
Query 496 TATCCTCGCCATCATAAGCGTTACTTCTTCCCTCAACAAGGAAGAGGCACAAGTTTCTCT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATCCTCGCCATCATAAGCGTTACTTCTTCCCTCAACAAGGAAGAGGCACAAGTTTCTCT 540
Query 556 GCAGGAGATGACTCACACCGGTTCACGAGTGCTGTTCGATCAACAATACTAGAAAACCTC 615
|||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 541 GCAGGAGATGACTCGCACCGGTTCAAGAGTGCTGTTCGAACAACAATACTAGAAAACCTC 600
Query 616 CCAAATACTGCAAGGAAAGCTAACAAGACAGGAAGCTTCTCTTTTGCACCTATCGTACAC 675
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 601 CCAAATACTGCAAGGAAAGCTAACAAGACAGGAAGCTTCTCTTTTGCACCCATCATACAC 660
Query 676 AACAACATCAACAACAGAACACCAAATAAGAGATCAAACTCTCCTATGAGATTCCCTCTC 735
||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 661 AACAACATCGACAACAGAACACCAAATAAAAGAACAAACTCTCCTATGAGATTCCCTCTC 720
Query 736 TTACGTTCAGGATCTCTACTGAAACGTTCAAGCTCCCCAAGCCAACCAAAGAAACCGCCC 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTACGTTCAGGATCTCTACTGAAACGTTCAAGCTCCCCAAGCCAACCAAAGAAACCGGTA 780
Query 796 TTAGCGTTACCGGAACCTCAAAGAGCTATATCTGTGTCGAGAAATACAGAGATAGTGGAG 855
||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 TTACCCTTACCGGAACCTCAAAGAGCGATATCTGTGTCGAGAAATACAGAGATAGTGGAG 840
Query 856 ATAAAGCAATCTTCATCGCGAAAAGGGAAGAAGATTCTGATGTTCAAGGCATTGATGAGT 915
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 841 ATAAAGCAATCTTCATCGCGAAAAGGGAAGAAGATTCTGATGCTCAAGGCATTGATGGGT 900
Query 916 ATGAGCAAGTCGAGAAACTAAAATCTCTCCTTGTATTTGATAAATGAAAAGATTTGTACA 975
||||||||||| |||||||||||||||||| | || || ||||||||||||
Sbjct 901 ATGAGCAAGTCCAGAAACTAAAATCTCTCC----A----AT----GACAAGATTTGTACA 948
Query 976 AAACTAATGTGAAATAAGAGA 996
|||||||||||||||||||||
Sbjct 949 AAACTAATGTGAAATAAGAGA 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5