BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42040.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330332 jgi|Araly1|330332|fgenesh1_pm.C_scaffold_7002559 798 0.0
> Ahg330332 jgi|Araly1|330332|fgenesh1_pm.C_scaffold_7002559
Length=804
Score = 798 bits (432), Expect = 0.0
Identities = 490/519 (94%), Gaps = 0/519 (0%)
Strand=Plus/Plus
Query 184 AGGAATCGTATTCCGCCATCTCCGCAAGAGAATCTAATCATGGGGTTGAACCTACTGAGA 243
|||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 286 AGGAATCGCATTCCGTCATCTCCGCAAGAGAATCTAACCCTGGGGTTGAACCTACTGCGA 345
Query 244 CTGCTTGTTCAGAACAGAATAGCTGAATTCCACACAGAACTGGGATTACTTTCATCTGCA 303
|||||||||||||||||||| |||||||||||||| || |||| ||||||||| ||||||
Sbjct 346 CTGCTTGTTCAGAACAGAATTGCTGAATTCCACACTGAGCTGGAATTACTTTCGTCTGCA 405
Query 304 ACCTTGGAGAATCCTTGCATCAAGCATGCGGTGGAGCTCGAGCAATCCTTCATGGAAGGT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 ACCTTGGAGAATCCTTGCATCAAGCATGCGGTGGAGCTCGAGCAATCCTTCATGGAAGGT 465
Query 364 GCTTATAACCGTGTGTTGAGTGCTAGACAAACCGCACCTGATGAGACTTACGTCTATTTC 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 466 GCTTATAACCGTGTGTTGAGTGCTAGACAAACCGCACCTGATGAGACTTACGTGTATTTC 525
Query 424 ATGGATCTCTTGGCAAAAACCATTAGAGATGAAATAGCTGGATGCAGTGAGAAAGCATAC 483
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 526 ATGGATCTCTTGGCAAAAACCATTAGAGACGAAATAGCTGGATGCAGCGAGAAAGCGTAC 585
Query 484 GATCATCTCTCAATCAGTGAAGGTTGTAAGATGTTACTCTTCTCGTCTGATCAACAACTG 543
|||||||||||| ||||||||||| |||||||||| |||||||| ||||||||| |||||
Sbjct 586 GATCATCTCTCAGTCAGTGAAGGTAGTAAGATGTTGCTCTTCTCTTCTGATCAAGAACTG 645
Query 544 TTAACATATGTGAACGAGGAGCACCCGGAGTGGGAAGTTAAAGACGGGTTAGTTGTCTTC 603
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 646 TTAACATATGTAAATGAGGAGCACCCGGAGTGGGAAGTAAAAGACGGGTTAGTTGTGTTC 705
Query 604 CAAAAAACCAGAGAAACCGCACCGTGCAAGGAGATACCGTCACTTCAACTCATCAACCAG 663
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 706 CAAAAAGCCAAAGAAACCGCACCGTGCAAGGAGATACCGTCACTTCAACTCATCAATCAG 765
Query 664 ACTCTCAGTTACACCAGAGAGCTCGAGCGTATCTTGTAA 702
|||||||| ||| |||||||||||||||||||| |||||
Sbjct 766 ACTCTCAGCTACGCCAGAGAGCTCGAGCGTATCGTGTAA 804
Score = 156 bits (84), Expect = 2e-37
Identities = 98/105 (93%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCGCAACTAATGGAGGTTTCACAGCAGTTCGAGAGGTTTAAAGCTGCGTTTATA 60
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCCGCAACTAACGGAGGTTTCGCAGCAGTTCGAGAGGTTTAAAGCTGCGTTTATA 60
Query 61 ATAAAAGATTTCGATACCTGTTCCAGTCTCTTGTCTCAGCTTAAG 105
| ||||||||||||| | ||| ||| |||||||||||||||||||
Sbjct 61 AGAAAAGATTTCGATTCATGTACCAATCTCTTGTCTCAGCTTAAG 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5