BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42050.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493778 jgi|Araly1|493778|fgenesh2_kg.7__3211__AT5G42050.1 1969 0.0
> Ahg493778 jgi|Araly1|493778|fgenesh2_kg.7__3211__AT5G42050.1
Length=1485
Score = 1969 bits (1066), Expect = 0.0
Identities = 1264/1352 (93%), Gaps = 44/1352 (3%)
Strand=Plus/Plus
Query 1 ATATTTCTCACCCATTTTTCACCAATTTCTCTCCACTTAAAACC-AACCCCAATTCTCAC 59
||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct 1 ATAATTCTCACCCATTTTTCACCAATTTCTCT--GCTTAAAACCAAACCCCAAATCTCAC 58
Query 60 CAAAAATCGCAAAAAAGATTTCAACTTTCGATAAACCCAGATCGAAAAATCAGATTTTTC 119
|||||||||||||||| |||||||||||||||| | |||||||||||||||| ||||||
Sbjct 59 AAAAAATCGCAAAAAAGCTTTCAACTTTCGATAATCTCAGATCGAAAAATCAGGTTTTTC 118
Query 120 CAGATCAATCAGAGAGTTAGAGATGGAGTATAATAACAACAATCAGCAATCTTTTTGGCA 179
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 CAGATCAATCAGAGA---AGAGATGGAGAATAATAACAACAATCAGCAATCTTTTTGGCA 175
Query 180 GTTCAGCGACCAGCTGAGAGTTCAGACACCGAATCTAGCGAATCTGTCTCTCAACGACTC 239
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 176 GTTCAGCGACCAATTGAGAGTTCAGACACCAAATCTAGCGAATCTGTCTCTCAACGACTC 235
Query 240 GATCTGGAGCACAAACTCTGTCTTCAAAGAGCGTCGAAACTTAGACATAGCCGCCACCAC 299
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 236 GATCTGGAGCACAAACTCTGTCTTCAAAGAGCGTCGAAACTTGGACATCGCCGCCACCGC 295
Query 300 CGACAAGAACAACAACCAGATCGACTATTATCAGAAGAAGACAACTTCCGACAACATCAA 359
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 296 CGACAAG---AACAACCAGATCGACTATTATCAGAAGAAGACAATTTCCGACAACATCAA 352
Query 360 TTCCAACTGGAACTGGAAGTCTTCTGGTTCAAACAACGACATGGGTTTAGGATTCGGACC 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 353 TTCCAACTGGAACTGGAAGTCTTCTGGTTCAAACAACGACATGGGTTTAGGTTTCGGACC 412
Query 420 TGTGGGTTCAAAATCCACCGTCGATTTAAACCCAATCGACAAATTCAACTCACCGTTCAA 479
||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 413 CGTGGGATCAAAATCCACCGTCGATTTTAACCCAATCGACAAATTCAACACACCGTTCAA 472
Query 480 CGACACGTGGAAATTCAACTCAGTCAACGTTAACGTTAACGGTTACTCACCGTCAAGCGC 539
|||||| ||||||||||| | || | | | | ||| | | | ||
Sbjct 473 CGACACCTGGAAATTCAA--C--TC-A-G-T--C---AAC-G----T-----T-AA---- 505
Query 540 CGTTAACGGAGATTTCAACAAAGGGGTTTACACGTCGATGAAGAAGTATGGGTACAACGT 599
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 506 CGTTAACGGAGATTTCAACAAAGGGGTTTACACGTCGATGAACAAGTATGGATACAACGT 565
Query 600 CAATCTAAAG---AACAACAACAAGAACAAAGGAATCGATGAAGATCATCAGATTCAGAA 656
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GAATCTAAAGAACAACAACAACAAGAACAAAGGAATCGATGAAGATCATCAGATTCAGAA 625
Query 657 AGGTGGGAAGAAGAACAGAAAGAATCAGCAGAACAATAATAACCAGAGGAACGAAGACGA 716
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 626 AGGTGGGAAGAAGAACAGAAAGAATCATCAGAACAACAATAACCAGAGGAACGAAGACGA 685
Query 717 CAAGAACAATGGTTTGGACAAGAGGTTTAAGACTCTTCCTCCAGCAGAAGCTTTGCCAAG 776
|||||| |||||| | |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 686 CAAGAATAATGGTGTAGACAAGAGGTTTAAGACTCTTCCTCCAGCAGAGGCGTTGCCAAG 745
Query 777 AAACGAAACCATTGGTGGTTACATCTTTGTCTGCAACAACGATACCATGGAAGAGAATCT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 746 AAACGAAACCATTGGTGGTTACATCTTTGTCTGCAACAACGATACCATGGAAGAGAACCT 805
Query 837 CAAACGCCAGCTTTTCGGATTGCCACCAAGATACAGGGACTCGGTTAGAGCGATAACTCC 896
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 806 CAAACGCCAGCTTTTCGGATTGCCACCAAGATACAGGGACTCGGTGAGAGCGATAACTCC 865
Query 897 AGGACTTCCTCTGTTTCTTTACAACTACTCCACTCACCAACTTCATGGAATCTACGAGGC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 866 AGGACTTCCTCTGTTTCTTTACAACTACTCCACTCACCAACTTCATGGAATCTACGAAGC 925
Query 957 AGCTAGCTTCGGAGGAACAAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGG 1016
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 926 AGCTAGCTTCGGAGGAACCAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGG 985
Query 1017 CGAATCTCGTTTCCCTGCTCAGGTGAGGGCCATAACGAGGAAAGTATGTTTGCCACTGGA 1076
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 986 CGAATCTCGTTTCCCTGCTCAGGTTAGGGCCATAACGAGGAAAGTGTGTTTGCCACTGGA 1045
Query 1077 AGAAGATTCTTTCCGACCCATTTTGCACCACTACGACGGTCCTAAGTTCCGACTCGAACT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1046 AGAAGATTCTTTCCGACCCATTTTGCACCACTACGACGGTCCTAAGTTCCGGCTCGAACT 1105
Query 1137 CAGTGTCCCTGAGGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 CAGTGTCCCTGAGGTGCTTTCTCTATTGGACATTTTTGCTGACCAAAACCCTTGAATTGG 1165
Query 1197 GTAATACCAATGAAGAACACAAAAC-AGTGGTTTGTTACTTCAAATCCAGAAAGAGAGAG 1255
| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1166 G-A-TACCAATGAAGAACACAAAAATAGTGGTTTGTTACTTGAAATCCAGAAAGAGAGAT 1223
Query 1256 ATACCCC-ATTATACATATATGATTATAAGGAGGAGTATTAATAATAATTGTCTGAAGAA 1314
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 ATACCCCCATTATACATATATGATTATAAGGAGGAGTATTAATAATAATTGTCTGAAGAA 1283
Query 1315 ATGGTATTTT-ACTAGTTTATACAGTTTCTTT 1345
|||||||||| ||||||||||| ||||| |||
Sbjct 1284 ATGGTATTTTTACTAGTTTATATAGTTTTTTT 1315
Score = 226 bits (122), Expect = 4e-58
Identities = 156/171 (91%), Gaps = 7/171 (4%)
Strand=Plus/Plus
Query 1378 TAGAAGATGTGCTATTTTTGTGTGGGTGGATGAAGAATAGATCTCATCTCCGC---GCtt 1434
||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1316 TAGAAGATGTGCTATTTTTGTGTGGGTGGATGAAGAATAGATCTCATCTCCACTTTGTTT 1375
Query 1435 ttttctttttGT--AAATTATATAAAATAACATATGTACAACCCCAAAAATAGGGAGAAA 1492
|||| ||||||| |||||| |||||||||||| ||||||||||||||| ||||| ||||
Sbjct 1376 TTTTTTTTTTGTGTAAATTAAATAAAATAACATTTGTACAACCCCAAAA-TAGGGGGAAA 1434
Query 1493 -TGAGATGATGAACTCTTATCAATTTGTGTTTGATATTTTTATTATTGCTC 1542
|||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1435 ATGAGATGATGAACTCTTATCAATTTGTGTTTGATATTTGTATAATTGCTC 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5