BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42060.1
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947495 jgi|Araly1|947495|scaffold_703724.1 438 2e-122
> Ahg947495 jgi|Araly1|947495|scaffold_703724.1
Length=325
Score = 438 bits (237), Expect = 2e-122
Identities = 295/322 (92%), Gaps = 7/322 (2%)
Strand=Plus/Plus
Query 5 GGTTTCTCTCTGTCGGCGAGACAT--CATCAATGGAGGAAGTAGCGAGAGAAGAAGTAGA 62
||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 GGTTTCT-T-TGTCGGCGAGAGATGACATCAATGGAGGAAGTAGCGAGAGAAGAAGTAGA 58
Query 63 GATCGACAAGGATCTGCGGAGGAAAATAAAGAAGACGGTGAAGAAGATCTTGGAAAGTTC 122
||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 59 GATCGACAAGGATCTGCAGAGGAAAATAGAGAGGACGGTGAAGAAGATCTTGGAAAGTTC 118
Query 123 GAACTTGTACAAGATAACAGAGATTAAGGCGCGAGAAGAAGCTTCACTTAAATTGGATCT 182
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 119 AAACTTGTACAAGATAACAGAGATCAAGGCGCGAGAAGAAGCTTCACTTGAATTGGATCT 178
Query 183 TGATCTGTCTCAAGATCCTTACAAGGTAATCGTGAAAGAAGAAGTTGAAAATTTCCTCGA 242
|||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 179 TGATCTCTCTCAAGATCCTTACAAGGTAATCGTGAGAGAAGTTGTTGAAAGTTTCCTCGA 238
Query 243 AGAAGCAGTAAAGTTGATCGGCAATAAACTTGCGATGCTTCCCAAGAGAATAGAGTCGAC 302
|||||| |||||| | |||||||||| |||||||||||||| |||| ||||||||||
Sbjct 239 AGAAGCCGTAAAGGTAATCGGCAATAGGCTTGCGATGCTTCCGGAGAGGATAGAGTCGA- 297
Query 303 GAGTATTTAGATATTATTAATC 324
| |||||||||||||||||||
Sbjct 298 G--TATTTAGATATTATTAATC 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20756640416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5