BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42080.1
Length=2430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493775 jgi|Araly1|493775|fgenesh2_kg.7__3208__AT5G42080.1 3781 0.0
> Ahg493775 jgi|Araly1|493775|fgenesh2_kg.7__3208__AT5G42080.1
Length=2395
Score = 3781 bits (2047), Expect = 0.0
Identities = 2290/2405 (95%), Gaps = 25/2405 (1%)
Strand=Plus/Plus
Query 22 TTCTTCATCGACTCAAATTCAAAAACTCATCTCTCTCTATCTCTATTTCTCTGGTTCCAT 81
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1 TTCTTCATCGACTCAAATTCAAAAACTCATCTCTCTCTATCTCTCTTTCTTTGGTTCCAT 60
Query 82 AGCTCACCGTCGCATCGCAGATCTACTCCTTCCGCAATAAATTTTACCGGCGGAGGTATC 141
|||||||||||||||||||||||||| ||| ||| | || ||||||||||||||||||||
Sbjct 61 AGCTCACCGTCGCATCGCAGATCTACACCTGCCGGAGTAGATTTTACCGGCGGAGGTATC 120
Query 142 AGATCTCGCCGATCTGTTGTAGCAGCTACTGTATTTTGGGCTTC-TCATTTGATATTGGG 200
|||||||||||||||||| |||| |||||||||||||| | ||| |||||||||||||||
Sbjct 121 AGATCTCGCCGATCTGTTCTAGCTGCTACTGTATTTTGAG-TTCTTCATTTGATATTGGG 179
Query 201 GAAACGAGGAGTAGAGGACGATGGAAAATCTGATCTCTCTGGTTAACAAGATACAGAGAG 260
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 GAAACGAGGAGTAGAGAACGATGGAGAATCTGATCTCTCTGGTTAACAAGATACAGAGAG 239
Query 261 CTTGCACGGCTTTAGGAGACCATGGAGACTCCAGCGCTTTACCTACTCTTTGGGATTCCT 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTTGCACGGCTTTAGGAGACCATGGAGACTCCAGCGCTTTACCTACTCTTTGGGATTCCT 299
Query 321 TGCCTGCGATCGCCGTCGTTGGTGGTCAGAGCTCAGGGAAGTCTTCAGTCCTGGAGAGCA 380
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 TACCTGCGATTGCCGTCGTTGGTGGTCAGAGTTCAGGGAAGTCTTCAGTCCTGGAGAGCA 359
Query 381 TCGTGGGAAAGGACTTTTTACCCCGTGGATCTGGCATTGTTACTCGAAGGCCCCTTGTCT 440
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 TCGTGGGAAAGGACTTTTTACCCCGTGGATCTGGCATCGTTACTCGAAGGCCCCTTGTCT 419
Query 441 TACAGTTGCAAAAGATCGATGATGGAACCCGGGAGTATGCAGAGTTTCTTCACCTCCCGA 500
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 TACAGTTGCAAAAGATCGAAGATGGAACCCGTGAGTATGCAGAGTTTCTTCACCTCCCGA 479
Query 501 GGAAAAAGTTTACTGATTTTGCTGCTGTGAGGAAGGAGATTCAAGATGAGACTGACAGAG 560
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAAAAGGTTTACTGATTTTGCTGCTGTGAGGAAGGAGATTCAAGATGAGACTGACAGAG 539
Query 561 AGACTGGACGCAGCAAGGCTATTTCTAGTGTTCCCATTCACCTTAGCATATACTCTCCCA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGACTGGACGCAGCAAGGCTATTTCTAGTGTTCCCATTCACCTTAGCATATACTCTCCCA 599
Query 621 ATGTTGTCAACTTGACACTGATAGATCTTCCAGGGCTTACAAAAGTTGCTGTTGATGGAC 680
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 ATGTTGTCAACTTGACACTGATAGATCTTCCAGGGCTTACAAAAGTTGCTGTAGATGGAC 659
Query 681 AATCTGATAGTATAGTGAAGGACATTGAAAACATGGTTCGGTCCTACATTGAAAAGCCCA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATCTGATAGTATAGTGAAGGACATTGAAAACATGGTTCGGTCCTACATTGAAAAGCCCA 719
Query 741 ACTGCATCATTTTGGCAATCTCACCTGCAAACCAAGATCTTGCTACCTCAGATGCAATTA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACTGCATCATTTTGGCAATCTCACCTGCAAACCAAGATCTTGCTACCTCAGATGCAATTA 779
Query 801 AAATTTCCCGTGAGGTTGATCCATCGGGGGACAGAACATTTGGTGTCTTGACAAAGATTG 860
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 AAATTTCCCGTGAGGTTGATCCATCGGGGGAGAGAACATTTGGTGTCTTGACAAAGATTG 839
Query 861 ATCTTATGGACAAGGGGACGGATGCAGTGGAAATTCTGGAAGGGAGATCTTTTAAACTTA 920
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATCTTATGGACAAGGGGACTGATGCAGTGGAAATTCTGGAAGGGAGATCTTTTAAACTTA 899
Query 921 AATATCCGTGGGTTGGTGTCGTCAACCGTTCCCAAGCAGATATTAACAAGAATGTCGACA 980
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AATATCCATGGGTTGGTGTCGTCAACCGTTCCCAAGCAGATATTAACAAGAATGTCGACA 959
Query 981 TGATTGCGGCTCGGAAAAGAGAGAGGGAGTACTTTTCCAATACTACTGAGTATAGGCACC 1040
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 960 TGATTGCGGCTCGGAAAAGAGAGAGGGAATACTTTTCCAATACTACTGAGTATAGGCACC 1019
Query 1041 TTGCTAATAAAATGGGTTCCGAGCATTTGGCAAAGATGCTCTCCAAGCATCTAGAACGTG 1100
||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 1020 TTGCTCATAAAATGGGTTCCGAGCATTTGGCAAAGATGCTATCCAAGCATCTCGAACATG 1079
Query 1101 TGATCAAGTCGAGAATTCCTGGCATTCAGTCACTTATTAACAAAACAGTATTAGAGCTGG 1160
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 TGATCAAGTCGAGAATTCCAGGCATTCAGTCACTTATTAACAAAACAGTATCAGAGCTGG 1139
Query 1161 AAACTGAACTAAGTCGCCTTGGAAAGCCTATTGCAGCTGATGCAGGGGGGAAGTTGTACT 1220
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAAGTGAACTAAGTCGCCTTGGAAAGCCTATTGCAGCTGATGCAGGGGGGAAGTTGTACT 1199
Query 1221 CAATAATGGAGATATGTCGGCTTTTTGATCAAATATTCAAAGAGCATCTTGATGGAGTGC 1280
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1200 CAATAATGGAGATATGTCGGCTTTTTGATCAAATATTCAAGGAGCATCTTGATGGAGTGC 1259
Query 1281 GTGCTGGTGGTGAAAAAGTGTACAACGTGTTTGATAACCAGCTTCCTGCGGCTCTGAAGA 1340
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1260 GTGCTGGTGGTGAAAAAGTGTATAACGTGTTTGATAACCAGCTTCCTGCGGCTCTGAAGA 1319
Query 1341 GACTCCAATTTGACAAGCAGCTAGCGATGGACAACATCCGGAAGCTGGTCACTGAGGCTG 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GACTCCAATTTGACAAGCAGCTAGCGATGGACAACATCCGGAAGCTGGTCACTGAGGCTG 1379
Query 1401 ATGGTTACCAGCCTCACTTGATTGCTCCTGAGCAAGGTTACCGTCGTCTCATTGAGTCTT 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ATGGTTACCAGCCTCACTTGATTGCTCCTGAGCAAGGTTACCGTCGTCTCATTGAGTCTT 1439
Query 1461 CTATTGTCTCCATCAGAGGCCCTGCTGAAGCATCTGTTGACACCGTTCATGCTATCTTAA 1520
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1440 CTATTGTCTCCATCAGAGGCCCTGCTGAAGCATCTGTTGACACCGTTCATGCCATCTTGA 1499
Query 1521 AGGATCTGGTTCACAAGTCTGTGAATGAAACTGTGGAACTAAAACAATACCCAGCTCTGA 1580
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1500 AGGATCTGGTTCACAAGTCTGTGAATGAGACTGTGGAACTAAAGCAATACCCAGCTCTGA 1559
Query 1581 GAGTGGAGGTGACAAATGCGGCGATAGAGTCGCTGGATAAAATGCGGGAAGGAAGTAAGA 1640
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 1560 GAGTGGAGGTGACAAACGCAGCCATAGAGTCGCTGGATAAAATGCGGGAAGGAAGTAAGA 1619
Query 1641 AAGCAACACTGCAGCTGGTTGACATGGAGTGCAGTTACCTCACTGTTGATTTCTTCAGGA 1700
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AAGCAACACTGCAGCTTGTTGACATGGAGTGCAGTTACCTCACTGTTGATTTCTTCAGGA 1679
Query 1701 AACTTCCCCAGGATGTTGAGAAGGGTGGTAACCCCACACACTCCATTTTCGACCGCTACA 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 AACTTCCCCAGGATGTTGAGAAGGGTGGTAACCCCACACACTCCATTTTCGACCGCTACA 1739
Query 1761 ACGATTCCTATCTCAGACGAATCGGATCCAATGTTTTGTCTTACGTGAACATGGTCTGTG 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ACGATTCCTATCTCAGACGAATCGGATCCAATGTTTTGTCTTACGTGAACATGGTCTGTG 1799
Query 1821 CTGGCCTGCGGAATTCAATCCCCAAGTCCATCGTATACTGCCAAGTCCGAGAAGCGAAGC 1880
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1800 CTGGCCTGCGAAATTCAATCCCCAAGTCCATCGTATACTGCCAAGTCCGAGAAGCCAAGC 1859
Query 1881 GCAGTCTCCTCGACCATTTCTTTGCGGAGCTCGGTACCATGGATATGAAGAGGCTCTCGT 1940
|||||||||| ||||||||||| || || |||||||||||||| ||||||||||| ||||
Sbjct 1860 GCAGTCTCCTTGACCATTTCTTCGCCGAACTCGGTACCATGGACATGAAGAGGCTTTCGT 1919
Query 1941 CGCTATTGAACGAAGATCCAGCAATCATGGAGAGACGCAGTGCCATCTCAAAGCGGCTAG 2000
| || || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1920 CTCTGTTAAACGAAGATCCAGCCATCATGGAGAGACGCAGTGCCATCTCAAAGCGGCTAG 1979
Query 2001 AATTGTATCGAGCAGCCCAATCCGAGATCGATGCTGTTGCTTGGTCCAAGTGATACCGGC 2060
| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1980 AGTTGTATCGAGCAGCCCAATCCGAGATCGACGCTGTTGCTTGGTCCAAGTGAAACCGGC 2039
Query 2061 ATGTCATGTCCACTGTTTTGCTCGGTTCTGGTCGGT-G-TG-G-CTCAGACTCGGAGCAG 2116
|| ||||||||||||||||||||||||||||||||| | || | |||||||||||| |||
Sbjct 2040 ATCTCATGTCCACTGTTTTGCTCGGTTCTGGTCGGTCGGTGTGGCTCAGACTCGGAACAG 2099
Query 2117 AGATTTAGGGTCTGTAATTTGTATAAGATGATCTTCCCGATACCATGCAGTATCGTTTTA 2176
||||||||| | |||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 2100 AGATTTAGGTTGTGTAATTTTTATAAGATGGTCTTCCCGATACCATGCAATATCGTTTTA 2159
Query 2177 TATAACATCCACATTGTTTGTCCTACCTCTATGTTTTTTGTCCATCACCCGATATGTTAC 2236
||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2160 TATAACATC-ATATTGTTTGTCCTACCTCTTTGTTTTTTGTCCATCACCCGATATGTTAT 2218
Query 2237 GTA--TCGTTTTATAACATCCACATTGTTTGTCCTGCCTCTAATG-TTTTTTGTCCATCA 2293
||| ||||||||||||||||||||||||| | || || || || ||||||||| ||||
Sbjct 2219 GTAGATCGTTTTATAACATCCACATTGTTTATTCTACCACTC-TGCTTTTTTGTCGATCA 2277
Query 2294 CCCGAT-ATGTTAC-G-TATCTT-TTATAACATCCACATAGAT-TAGATTT-TCTCTATT 2347
||| || ||| | | | ||| || || || ||||||||| | || ||| || ||
Sbjct 2278 CCC-ATTATGCTGCAGATAT-TTGTTCCAA--TCCACATAGGTATACATTGGTCCCTGG- 2332
Query 2348 CCCTTTATTTA-ATTACTATAAAATGTATTTTTCGCATATGATAATTTTTCTGTAACAAT 2406
| | ||| | || |||||||||| | ||||| |||||||||||||||| |||||||||
Sbjct 2333 CAGTG-ATTAACAT-ACTATAAAATATGTTTTTTGCATATGATAATTTTTTTGTAACAAT 2390
Query 2407 AGTAT 2411
|||||
Sbjct 2391 AGTAT 2395
Score = 110 bits (59), Expect = 7e-23
Identities = 85/96 (89%), Gaps = 7/96 (7%)
Strand=Plus/Plus
Query 2238 TATCG-TTT-TATAACATCCACATTGTTTGTCCTGCCTCTAATGTTTTTTGTCCATCACC 2295
||||| ||| |||||||| || |||||||||||| ||||| ||||||||||||||||||
Sbjct 2150 TATCGTTTTATATAACAT-CATATTGTTTGTCCTACCTCT-TTGTTTTTTGTCCATCACC 2207
Query 2296 CGATATGTTACGTA--TC-TTTTATAACATCCACAT 2328
|||||||||| ||| || |||||||||||||||||
Sbjct 2208 CGATATGTTATGTAGATCGTTTTATAACATCCACAT 2243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91568948980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5