BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42090.1
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947489 jgi|Araly1|947489|scaffold_703718.1 2215 0.0
Ahg951993 jgi|Araly1|951993|scaffold_28500003.1 163 4e-39
> Ahg947489 jgi|Araly1|947489|scaffold_703718.1
Length=1357
Score = 2215 bits (1199), Expect = 0.0
Identities = 1303/1353 (96%), Gaps = 8/1353 (1%)
Strand=Plus/Plus
Query 123 CCTAGTTC-CCATGGATCTCTCTTCACGCTTCTCATCGATCCTTATCCTTCTCTTGATCT 181
||| |||| |||||||| ||||||||||||||||||||||| || |||||||||| ||||
Sbjct 10 CCTTGTTCTCCATGGATTTCTCTTCACGCTTCTCATCGATCGTTCTCCTTCTCTTCATCT 69
Query 182 CCATCTCCATAGCTTC-GGCTGAGATTCGTAAATCAGAGATCCGATCCGATGATCGTCCA 240
|||||||||||||||| || ||||||||| ||||||||||||||||||||||| || ||
Sbjct 70 CCATCTCCATAGCTTCTGG-TGAGATTCGCAAATCAGAGATCCGATCCGATGACCGACCC 128
Query 241 ATCATCCCTTTAGACGAATTCGGTTTCACTCACAGC-GGTCGTCTTGAGCTTGACGCTTC 299
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 129 ATCATCCCTTTAGACGAATTCGGTTTCACTCACA-CGGGTCGTCTCGAGCTTGACGCTTC 187
Query 300 CAAGATCTGGCTTTCCAACAGCAATCCCGATCTCGATCTCTCCAAAGTGGGCTTCTTTCT 359
|||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 188 CAAGATCTCGCTTTCCAACACCAATCCCGATCTAGATCTCTCCAAAGTCGGCTTCTTTCT 247
Query 360 CTGCACTAGAGACGCTTGGGTTCATGTGATCCAACAGCTTGAAGAAGAAGAGATCACGTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 248 CTGCACTAGAGACGCTTGGGTTCATGTGATCCAACAGCTTGAAGAAGAAGAGATCACATG 307
Query 420 CGCTCTACAATCAGATCTCGTTAAGCATGTGTTCACCTTCAACAATCTCAAGGGAGGAGA 479
|||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct 308 CGCTCTACAATCAGATCTCGTTAAGCATGTCTTCACCTTCAACAATCTCAA--G-GGAGA 364
Query 480 TAAGAGCAGATTCTCCACCGTATTCACCGAGAACGATGCGGATCAGTACTCTCTCGTCTT 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 365 TAAGAGCAGATTCTCCACCGTATTCACCGAGAACGATGCCGATCAGTACTCTCTCGTCTT 424
Query 540 CGCTAATTGTCTCCAACAGGTCAAAATCAGTATGGATGTTAGATCCGCTATGTATAACCT 599
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 425 CGCTAATTGCCTCCAACAGGTCAAAATCAGTATGGATGTTAGATCTGCTATGTATAACCT 484
Query 600 TGAAGGTAAAAAGGGAGGTCGTGATTATCTCTCTGCTGGAAGAACTGTTCTTCCTAAGGT 659
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 485 TGAAGGTAAAAAGGGTGGTCGTGATTATCTCTCTGCTGGAAGAACTGTTCTCCCAAAGGT 544
Query 660 CTATTTCTTATTCTCTGTTATCTATTTCTCTCTCGCCGCCACGTGGATCTACGTTCTCTA 719
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 545 CTATTTCTTCTTCTCTGTTATCTATTTCTCTCTCGCTGCGACGTGGATCTACGTTCTCTA 604
Query 720 TAAGAAACGTCTCACTGTTTTCGCAATCCATTTCTTCATGTTGGGAGTTGTTGTCTTGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TAAGAAACGTCTCACTGTTTTCGCAATCCATTTCTTCATGTTGGGAGTTGTTGTCTTGAA 664
Query 780 AGCTTTGAACCTTCTTTGTGAGGCTGAGGATAAGTCGTACATTAAGAAAACTGGAACTGC 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 665 AGCTTTGAACCTTCTTTGTGAGGCTGAGGATAAGTCGTATATTAAGAAAACTGGAACAGC 724
Query 840 TCATGGTTGGGATGTCTTGTTCTACATTTTCAATTTCCTTAAGGGTATCACTCTTTTCAC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TCATGGTTGGGATGTCTTGTTCTACATTTTCAATTTCCTTAAGGGTATCACTCTTTTCAC 784
Query 900 TTTGATCGTCTTGATCGGCACCGGTTGGTCTTTCTTGAAGCCCTACTTGCAGGACAAGGA 959
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 785 TTTGATCGTCTTGATCGGCACGGGTTGGTCTTTCTTGAAGCCCTACTTGCAGGACAAGGA 844
Query 960 AAAGAAGGTCTTGATGATTGTCATTCCTCTCCAGGTTGTCGCTAACTTTGCTCAGGTGGT 1019
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 845 AAAGAAGGTCTTGATGATTGTGATTCCTCTCCAGGTTGTGGCTAACTTTGCTCAGGTAGT 904
Query 1020 TATCGATGAGACTGGACCGTATGGCCAAGATTGGGTCACGTGGAAACAGATCTTTTTGCT 1079
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 905 TATCGATGAGACTGGACCATATGGCCAAGATTGGGTCACATGGAAACAGATCTTTTTGCT 964
Query 1080 TGTTGATGTCGTCTGTTGCTGTGCTGTTCTGTTTCCCATTGTCTGGTCCATCAAAAACTT 1139
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 965 TGTTGATGTCGTCTGTTGCTGTGCTGTTCTGTTTCCCATTGTGTGGTCCATCAAAAACTT 1024
Query 1140 GCGTGAGGCGGCTAAGACTGACGGGAAGGCTGCTGTGAACCTCGTTAAGTTAACTCTGTT 1199
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1025 GCGTGAGGCCGCTAAGACTGACGGGAAGGCTGCTGTGAACCTGGTTAAGTTAACTCTGTT 1084
Query 1200 TAGGCAGTACTACATTGTGGTTATCTGCTACATCTACTTCACTCGTGTTGTTGTGTATGC 1259
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1085 TAGGCAGTACTACATTGTGGTTATCTGCTACATCTACTTTACTCGTGTTGTTGTGTATGC 1144
Query 1260 ACTGGAGACCATTACCTCTTACAAGTATATGTGGACTAGTGTTGTTGCCAGCGAGTTAGC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 ACTGGAGACCATTACCTCTTACAAGTATATGTGGACTAGTGTTGTTGCCAGCGAGTTAGC 1204
Query 1320 CACACTTGCCTTCTATCTGTTTACTGGCTACAAGTTCAGGCCAGAGGTGCATAACCCGTA 1379
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1205 CACACTTGCGTTCTATCTGTTTACTGGCTACAAGTTCAGGCCAGAGGTGCATAACCCATA 1264
Query 1380 CTTTGTTGTTGACGATGAGGAAGAAGAGGCTGCTGCTGAGGCTCTGAAGCTTGAAGACGA 1439
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1265 CTTTGTTGTTGATGATGAGGAAGAAGAGGCTGCAGCTGAGGCCCTGAAGCTTGAAGACGA 1324
Query 1440 GTTTGAATTGTAAGTCATCACTGGAATAATCGT 1472
|||||||||||||||||||||||||||||||||
Sbjct 1325 GTTTGAATTGTAAGTCATCACTGGAATAATCGT 1357
> Ahg951993 jgi|Araly1|951993|scaffold_28500003.1
Length=214
Score = 163 bits (88), Expect = 4e-39
Identities = 110/121 (91%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 236 GTCCAATCATCCCTTTAGACGAATTCGGTTTCACTCACAGCGGTCGTCTTGAGCTTGACG 295
||| ||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||
Sbjct 49 GTCGAATCATCCCTTTAGACGAATTCGGTTTCACTCACATCGGTCGCCTCGAGCTCGACG 108
Query 296 CTTCCAAGATCTGGCTTTCCAACAGCAATCCCGATCTCGATCTCTCCAAAGTGGGCTTCT 355
| |||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||
Sbjct 109 CCTCCAAGATCTCGCTTTCCAACCCCAATCCCGATCTGGATCTCTCCAAAGTCGGCTTCT 168
Query 356 T 356
|
Sbjct 169 T 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5