BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G42092.1

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947489 jgi|Araly1|947489|scaffold_703718.1                        614    2e-175
  Ahg951993 jgi|Araly1|951993|scaffold_28500003.1                      163    1e-39 


> Ahg947489 jgi|Araly1|947489|scaffold_703718.1
Length=1357

 Score =  614 bits (332),  Expect = 2e-175
 Identities = 380/402 (95%), Gaps = 7/402 (2%)
 Strand=Plus/Minus

Query  94   GAAGACGAGAGAGTACTGATCCGCATCGTTCTCGGTGAATACGGTGGAGAATCTGCTCTT  153
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  425  GAAGACGAGAGAGTACTGATCGGCATCGTTCTCGGTGAATACGGTGGAGAATCTGCTCTT  366

Query  154  ATCTCCTCCCTTGAGATTGTTGAAGGTGAACACATGCTTAACGAGATCTGATTGTAGAGC  213
            |  | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  365  A--T-CTCCCTTGAGATTGTTGAAGGTGAAGACATGCTTAACGAGATCTGATTGTAGAGC  309

Query  214  GCACGTGATCTCTTCTTCTTCAAGCTGTTGGATCACATGAACCCAAGCGTCTCTAGTGCA  273
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  308  GCATGTGATCTCTTCTTCTTCAAGCTGTTGGATCACATGAACCCAAGCGTCTCTAGTGCA  249

Query  274  GAGAAAGAAGCCCACTTTGGAGAGATCGAGATCGGGATTGCTGTTGGAAAGCCAGATCTT  333
            |||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||
Sbjct  248  GAGAAAGAAGCCGACTTTGGAGAGATCTAGATCGGGATTGGTGTTGGAAAGCGAGATCTT  189

Query  334  GGAAGCGTCAAGCTCAAGACGACC-GCTGTGAGTGAAACCGAATTCGTCTAAAGGGATGA  392
            ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct  188  GGAAGCGTCAAGCTCGAGACGACCCG-TGTGAGTGAAACCGAATTCGTCTAAAGGGATGA  130

Query  393  TTGGACGATCATCGGATCGGATCTCTGATTTACGAATCTCAGCC-GAAGCTATGGAGATG  451
            | || || ||||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct  129  TGGGTCGGTCATCGGATCGGATCTCTGATTTGCGAATCTCA-CCAGAAGCTATGGAGATG  71

Query  452  GAGATCAAGAGAAGGATAAGGATCGATGAGAAGCGTGAAGAG  493
            ||||| |||||||||| || ||||||||||||||||||||||
Sbjct  70   GAGATGAAGAGAAGGAGAACGATCGATGAGAAGCGTGAAGAG  29


 Score =  169 bits (91),  Expect = 2e-41
 Identities = 95/97 (98%), Gaps = 0/97 (0%)
 Strand=Plus/Minus

Query  1    TACCCTTAAGGAAATTGAAAATGTAGAACAAGACATCCCAACCATGAGCAGTTCCAGTTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  771  TACCCTTAAGGAAATTGAAAATGTAGAACAAGACATCCCAACCATGAGCTGTTCCAGTTT  712

Query  61   TCTTAATGTACGACTTATCCTCAGCCTCACAAAGAAG  97
            ||||||| |||||||||||||||||||||||||||||
Sbjct  711  TCTTAATATACGACTTATCCTCAGCCTCACAAAGAAG  675


> Ahg951993 jgi|Araly1|951993|scaffold_28500003.1
Length=214

 Score =  163 bits (88),  Expect = 1e-39
 Identities = 110/121 (91%), Gaps = 0/121 (0%)
 Strand=Plus/Minus

Query  278  AAGAAGCCCACTTTGGAGAGATCGAGATCGGGATTGCTGTTGGAAAGCCAGATCTTGGAA  337
            |||||||| |||||||||||||| ||||||||||||  |||||||||| |||||||||| 
Sbjct  169  AAGAAGCCGACTTTGGAGAGATCCAGATCGGGATTGGGGTTGGAAAGCGAGATCTTGGAG  110

Query  338  GCGTCAAGCTCAAGACGACCGCTGTGAGTGAAACCGAATTCGTCTAAAGGGATGATTGGA  397
            ||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  109  GCGTCGAGCTCGAGGCGACCGATGTGAGTGAAACCGAATTCGTCTAAAGGGATGATTCGA  50

Query  398  C  398
            |
Sbjct  49   C  49



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17894971241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5