BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42120.1
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494821 jgi|Araly1|494821|fgenesh2_kg.8__637__AT5G42120.1 3155 0.0
> Ahg494821 jgi|Araly1|494821|fgenesh2_kg.8__637__AT5G42120.1
Length=2070
Score = 3155 bits (1708), Expect = 0.0
Identities = 1951/2070 (94%), Gaps = 9/2070 (0%)
Strand=Plus/Plus
Query 8 ATCATCATTACTCTCTCGTCATCTTCCACCTAATTCTCTTCCTTTCCCTAGATTTTCCCA 67
|||||||| |||||||| || ||||| || |||||||||||||||||| |||||| ||||
Sbjct 5 ATCATCATCACTCTCTCTTCTTCTTCTACGTAATTCTCTTCCTTTCCCAAGATTTCCCCA 64
Query 68 CACTTTCTCACCGTTTCTCGCCGCCGCTACAAAACTTAACTCTCTACGGCGACGCCTTCT 127
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 65 CACTTTCTCACCGTTTCTCGCCGCCGCTACACAACTTAACTCTCTACGGCGACGCCTTCT 124
Query 128 TCCGCGACCGTACAATCTCACTAACCCAACAACAACCTTGCTTTCCCTCCGTCACAACAC 187
||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||
Sbjct 125 TCCGCGACCGTACAATCTCTCTCACACAACAACAACCTTGCTTTCCCTCCGCCACAACAC 184
Query 188 CACCGTCAAAACCATCTTCCTCCGGCATTGGACGAGCTCTCTACGTGTACCCAATAAAGT 247
| |||||||||||| | ||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 185 CGCCGTCAAAACCAACCTCCTCCGGCATCGGGCGAGCTCTCTACGTATACCCAATTAAGT 244
Query 248 TTCTCGAACCTTCCACTAACACAACCGCTTCTTTCTCTTGCCGCTTCTCCTTCTCCATCA 307
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 245 TTCTTGAACCTTCCACTAACACAACCGCTTCTTTCTCATGCCGCTTCTCCTTCTCCATCA 304
Query 308 TCGCTTCTCCTTCTTGCCCTTTTGGTGACGGCTTCGCTTTCTTGATCACGTCTAATGCTG 367
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 305 TCTCTTCTCCTTCTTGCCCTTTTGGTGACGGCTTCGCTTTCTTGATCACATCTAATGCTG 364
Query 368 ACTCATTCGTCTTCTCTAATGGCTTCTTGGGTCTACCAAATCCTGATGATTCTTTCATCG 427
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 365 ACTCATTCGTCTTCTCTAATGGCTTCTTGGGTCTACCAAATCCGGATGATTCTTTCATCG 424
Query 428 CCGTTGAGTTTGATACTAGATTTGACCCGGTTCACGGTGACATCAACGATAACCATGTTG 487
|||| |||||||||||| |||||||||||| ||| ||||| |||||||||||||| ||||
Sbjct 425 CCGTCGAGTTTGATACTGGATTTGACCCGGGTCATGGTGATATCAACGATAACCACGTTG 484
Query 488 GAATCGATGTTAGTTCAATCTTCTCTGTTTCTTCCGTTGATGCGATTTCGAAAGGGTTTG 547
|||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 485 GAATCGATGTTAATTCAATCTTCTCCGTTGCTTCCGTTGATGCGATTTCAAAAGGGTTTG 544
Query 548 ATCTTAAAAGTGGGAAAAAGATGATGGCTTGGATTGAGTATAGTGATGTTCTTAAACTGA 607
||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 545 ATCTTAAGAGTGGGAGAGAGATGATGGCGTGGATTGAGTATAGTGATGTTCTTAAACTCA 604
Query 608 TTAGGGTTTGGGTTGGGTATTCTCGTGTTAAGCCTACTAGTCCTGTTTTATCAACACAGA 667
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 605 TTAGGGTTTGGGTTGGGTATTCTCGTGTTAAGCCTACGAGTCCTGTTTTATCAACACAGA 664
Query 668 TTGATCTCTCTGGTAAAGTTAAAGAGTATATGCATGTTGGTTTCTCTGCTTCGAATGCTG 727
|||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 665 TTGATCTCTCTGGTAAAGTTAAGGAGTATATGCACGTTGGGTTCTCTGCTTCGAATGCTG 724
Query 728 GTATTGGGTCAGCTTTGCATATCGTTGAGCGGTGGAAATTTAGGACCTTTGGGTCTCATT 787
|| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 725 GTGTTGGGTCAGCTTTGCATATCGTTGAGAGGTGGAAATTTACGACCTTTGAGTCTCATT 784
Query 788 CTGATGCGATTCAAGAAGAGGAGGAGGAGAAAGATGAAGAGTGTTTGGTTTGCTCAGGGG 847
||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 785 CTGATGCGATTCAAG-A-A-GAGGAGGAGAAAGATGAAGAGTGTTTGGTCTGCTCAGGGG 841
Query 848 AAGTTTCCGAAAATCCGAAGGAAATTCATCGTAAAGGTTTCAACTTTAGGGTTACAGTTG 907
|||||| ||| ||||||| || |||||||||||||||||| |||||||||| ||||||
Sbjct 842 AAGTTTTCGAGAATCCGATGGGAATTCATCGTAAAGGTTTTGGCTTTAGGGTTTCAGTTG 901
Query 908 TTGGATTAAAGATACCAGTTTGGAGTCTTTTACCTGGTTTGGCTGCAATTGTTATCCTCG 967
||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 902 TTGGATTTAAGATACCATTTTGGAGTCTTTTACCTGGTATGGCTGCAATTGTTATTCTCG 961
Query 968 TGGCGTTTATTGTTTTCTCATTGATTTGTGGCAAGAAAAGGATTAGTG-AGGAAGCTGAT 1026
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 962 TGGCGTTTATTGTTTTCTCATTGATTTCTGGCAAGAAAAGGATTAGTGAAGG-AGCTGAT 1020
Query 1027 TCGAATTCGGGGCTTGTTCGGATGCCTGGAAGGTTATCCTTGGCTGAGATCAAATCCGCG 1086
||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 ACGAATTCGGGGATTAATAGGATGCCGGGAAGGTTATCCTTGGCTGAGATCAAATCCGCG 1080
Query 1087 ACGTCGGGTTTCAATGAGAACGCAATCGTTGGTCAAGGAGCTTCTGCTACTGTCTATAGA 1146
|| ||||| |||||||||||| ||||||| |||||||| ||||| |||||||| || |||
Sbjct 1081 ACATCGGGATTCAATGAGAACACAATCGTGGGTCAAGGGGCTTCAGCTACTGTGTACAGA 1140
Query 1147 GGCTCTATTCCTTCCATTGGATCCGTGGCCGTGAAGCGGTTTGATCGAGAACACTGGCCA 1206
|||||||||||||| || ||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1141 GGCTCTATTCCTTCTATCGGATCAGTGGCCGTGAAGCGCTTTGATCGAGATCACTGGCCA 1200
Query 1207 CAATGCAACCGTAACCCTTTCACCACAGAGTTCACCACAATGACTGGTTACTTGCGGCAC 1266
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CAGTGCAACCGTAACCCTTTCACCACAGAGTTCACCACAATGACTGGTTACTTGCGGCAC 1260
Query 1267 AAGAATCTGGTTCAGTTCCAGGGGTGGTGCAGCGAAGGAACAGAGACGGCCTTAGTGTTT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AAGAATCTGGTTCAGTTCCAGGGGTGGTGCAGCGAAGGAACAGAGACGGCCTTAGTGTTT 1320
Query 1327 GAGTACTTACCTAACGGAAGTTTAAGTGAATTCCTACACAAGAAACCCTCATCTGATCCA 1386
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 GAGTACTTGCCAAACGGAAGTTTAAGTGAATTCCTACACAAGAAACCCTCATCGGATCCA 1380
Query 1387 TCAGAAGAGATCATAGTACTCTCTTGGAAGCAGAGGGTAAACATCATTCTCGGTGTGGCT 1446
||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1381 TCAGAAGAGTTTATAGTCCTCTCTTGGAAGCAGCGGGTAAACATCATTCTCGGTGTGGCT 1440
Query 1447 TCCGCACTTACATATCTACACGAAGAATGTGAGAGACAGATCATCCACCGTGACGTCAAG 1506
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TCCGCACTTACTTACCTACACGAAGAATGTGAGAGACAGATCATCCACCGTGACGTCAAG 1500
Query 1507 ACCTGTAACATAATGCTTGATGCCGAGTTTAACGCCAAGCTTGGTGATTTCGGGTTAGCT 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 ACCTGTAACATAATGCTTGATGCCGAGTTTAACGCCAAGCTTGGTGATTTCGGGTTAGCT 1560
Query 1567 GAGATATATGAGCACAGTGCGTTGCTAGCTGGACGAGCTGCTACACTCCCAGCAGGTACT 1626
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1561 GAGATTTACGAGCACAGTGCGTTGCTAGCTGGACGAGCTGCAACACTCCCAGCAGGTACT 1620
Query 1627 ATGGGTTACTTGGCACCAGAATACGTGTACACAGGTGTGCCCTCTGAAAAAACAGACGTG 1686
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1621 ATGGGTTACTTGGCACCTGAATACGTGTATACAGGTGTGCCCTCTGAAAAAACCGACGTG 1680
Query 1687 TACAGCTTTGGAGTGGTGGTTCTGGAAGTGTGTACGGGGCGTAGGCCGGTGGGGGATGAC 1746
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TACAGCTTTGGAGTTGTGGTTCTGGAAGTGTGTACGGGGCGTAGGCCGGTGGGGGATGAC 1740
Query 1747 GGGGCGGTGCTTGTAGACCTGATGTGGAGCCACTGGGAGACAGGGAAGGTGCT-GGATGG 1805
||| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1741 GGGACGGTGCTTGTAGACCTGATGTGGAGCCTCTGGGAGACAGGGAAGGT-CTTGGATGG 1799
Query 1806 GGCTGACATCATGCTGAGGGAAGAGTTCGATGCAGAGGAAATGGAAAGGGTGTTGATGGT 1865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TGCTGACATCATGCTGAGGGAAGAGTTCGATGCAGAGGAAATGGAAAGGGTGTTGATGGT 1859
Query 1866 TGGGATGGTTTGTGCGCATCCTGACAGTGAGAAGCGGCCAAGGGTGAAGGATGCTGTGAG 1925
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1860 TGGGATGGTTTGTGCGCATCCTGACTGTGAGAAGCGGCCAAGGGTGAAGGAGGCTGTGAG 1919
Query 1926 GATTATACGCGGGGAGGCGCCGTTGCCAGTTCTTCCGGCGAGGAGGCCTTTGTTGAGAAT 1985
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1920 GATTATACGCGGGGAGGCGCCGTTGCCAGTTCTTCCGGCGAGGAGGCCTTTGTTAAGAAT 1979
Query 1986 CCGACCGGCTAACG-AAGCGGAAGAGATGATTGTCGATGGTTTGGTTGGGGAGGATCTTC 2044
||| |||||| || |||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 1980 CCGGTCGGCTA-CGGAAGCGGAAGAGATGATTGCCGATGGTTTGGGTCGGGAGGATCTTA 2038
Query 2045 CTTGGATGACTCCTAAATCGCACTTTAGCT 2074
|||||||||| |||||||||||||||||||
Sbjct 2039 CTTGGATGACGCCTAAATCGCACTTTAGCT 2068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78085002250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5