BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42130.1
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949111 jgi|Araly1|949111|scaffold_800998.1 1941 0.0
Ahg932651 jgi|Araly1|932651|scaffold_400639.1 52.8 7e-06
> Ahg949111 jgi|Araly1|949111|scaffold_800998.1
Length=1279
Score = 1941 bits (1051), Expect = 0.0
Identities = 1205/1281 (94%), Gaps = 3/1281 (0%)
Strand=Plus/Plus
Query 9 AAGCTTCCACCCAAATCAACCATGGAAGCTAGACTCTCCGAAACTCTTGGCCTCCCATCT 68
|||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCTT-CACCCAAATCAGCAATGGAAGCTAGACTCTCCGAAACTCTTGGCCTCCCATCA 59
Query 69 CCAAATCTTAATCACTGCCATTTTCCCAACGAGTTCAATTCTCTCTTCACTCATTTCTCC 128
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 60 CCGAATCTTAATCACTGCCATTTTCCCAACGATTTCAATTCCCTCTTCACTCATTTCTCC 119
Query 129 GATCTCACCTCCGTCCAAAGCCCTATCGTCAGAAACCCTAAACTCAAAACCAAATCCTCT 188
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 120 GATCTCACCTCCGTCCAAAGCCCTATCGTCAGAAACCCTAAACCCAAAACCAAATTCTCT 179
Query 189 CAAAAACCCCCAAAATTTTCAGCAAATTTCAGAAGATCCGACCCACCATTTGCATCAACA 248
||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 AAAAAATCAACAAAATTTCCAGCAAATTTCAGAAGATCCGACCCACTATTTGCATCAACA 239
Query 249 TCAATCTCGGATCCAACCCACGAAAAACCCGGACCCGAATTCCTGAAATGGATCAAACCC 308
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 240 TCAATCTCGGATCCAATCCACGCGAAACCCGGATCCGAATTCCTGAAATGGATCAAACCA 299
Query 309 GCATCACGAAGCAGTCCAAGAATTCAAACACTCATCAAACAACTCTCCGTCTGGGAACGT 368
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 300 GCATCGCGAAGCAGTCCAAGAATTCAAACACTCATGAAACAACTCTCTGTCTGGGAACGT 359
Query 369 GCCATCATCGGTGCAGGAGCCGGTGGACTCGCCGGAGCTTTCACATACGTTACTCTTCTC 428
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 360 GCCATCATCGGTGCAGGAGCCGGTGGACTCGCCGGAGCTTTTACATACGTTGCTCTTCTC 419
Query 429 CCACTTGACGCAATCAAAACCAAGCTTCAAACCAAAGGCGCTTCTCAGGTTTATAGTAAC 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 420 CCACTTGACGCAATCAAAACCAAGCTTCAAACCAAAGGCGCTTCTCAGGTTTATCGCAAC 479
Query 489 ACATTTGATGCTATAGTGAAAACCTTTCAAGCTAAAGGTATATTAGGTTTCTATAGTGGT 548
||||||||||||||||| || || ||||||||||||||| | ||||||||||| ||||||
Sbjct 480 ACATTTGATGCTATAGTTAAGACATTTCAAGCTAAAGGTGTTTTAGGTTTCTACAGTGGT 539
Query 549 GTCTCCGCCGTGATTGTTGGCTCTACGTTTTCCTCCGCCGTGTATTTCGGTACTTGTGAG 608
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 GTCTCCGCCGTGATTGTTGGCTCTACGTTTTCCTCCGCCGTGTATTTTGGTACTTGTGAG 599
Query 609 TTTGGTAAGTCTCTGCTCTCTAAGTTCCCTGATTTTCCGACGGTTTTAATCCCGCCTACT 668
|||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 600 TTTGGTAAGTCTCTCCTCTCCAAATTCCCGGATTTTCCGACGGTTTTAATCCCGCCTACT 659
Query 669 GCTGGTGCTATGGGAAACATAATCTCTTCAGCTATAATGGTTCCTAAAGAGCTCATTACA 728
|||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct 660 GCTGGTGCTATGGGAAACATAATCTCGTCGGCGATAATGGTTCCTAAAGAGCTTATTACA 719
Query 729 CAGAGAATGCAAGCTGGAGCTAGTGGGAGATCTTATCAAGTTTTACTTAAGATACTTGAG 788
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 720 CAGAGAATGCAAGCTGGAGCTAGTGGGAGGTCGTATCAAGTTTTGCTTAAGATACTTGAG 779
Query 789 AAAGATGGAATCTTGGGGCTTTACGCCGGTTATTCGGCTACATTGTTGAGGAATTTACCC 848
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 AAAGATGGAATCTTGGGGCTTTATGCCGGTTATTCGGCTACATTGTTGAGGAATTTACCG 839
Query 849 GCTGGTGTACTCAGTTATTCGTCGTTTGAGTATCTGAAAGCCGCGGTTTTGGAGAAAACG 908
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 GCTGGTGTACTAAGTTATTCGTCGTTTGAGTATCTGAAAGCAGCGGTTTTGGAGAAAACG 899
Query 909 AAGCAGAGCCATCTTGAGCCTTTGCAGAGTGTTTGTTGCGGTGCGTTGGCTGGTGCGATA 968
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 CAGCAGAGCCATCTGGAGCCTTTGCAGAGTGTTTGTTGTGGTGCGTTGGCTGGTGCGATA 959
Query 969 TCGGCTTCGATAACTACGCCGTTAGATGTTGTGAAGACTAGGCTGATGACACAGATTCAT 1028
|| ||||||||||| || || |||||||| ||||||||||||||||||||||||||||||
Sbjct 960 TCTGCTTCGATAACCACACCATTAGATGTGGTGAAGACTAGGCTGATGACACAGATTCAT 1019
Query 1029 GTGGAGGCTGTGGATAAACTCGGTGGTGCTATGTATACTGGTGTTGCTGGGACAGTGA-A 1087
|||||||| ||| ||||||| |||| |||||||||||||||||||||||| ||||||| |
Sbjct 1020 GTGGAGGCAGTGAATAAACTTGGTGCTGCTATGTATACTGGTGTTGCTGGAACAGTGAGA 1079
Query 1088 GCAGATATTGACAGAGGAAGGTTGGGTTGGTTTTACCCGCGGCATGGGACCTCGAGTTGT 1147
|||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1080 -CAGATATTGAAAGAGGAAGGTTGGGTTGGTTTTACCCGTGGCATGGGGCCCCGAGTTGT 1138
Query 1148 TCACAGCGCTTGTTTCTCTGCGATCGGTTATTTTGCCTTTGAGACTGCTAGGCTTACAAT 1207
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1139 TCACAGCGCTTGTTTCTCAGCGATCGGTTATTTTGCGTTTGAGACTGCGAGGCTTACAAT 1198
Query 1208 CTTGAATGAATATTTGAAAAGGAAAGAAGAGTCTGAAGCTAACGTTGCTGCTGATTCTTG 1267
||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1199 CTTAAATGAATATTTGAAAAGGAAAGAAGATTCTGAAGCTACCGTTGCTGCTGATTCTTG 1258
Query 1268 AGTTCGGTTTTTGGTATAGTC 1288
|||| | ||||||||||||||
Sbjct 1259 AGTTTGCTTTTTGGTATAGTC 1279
> Ahg932651 jgi|Araly1|932651|scaffold_400639.1
Length=197
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1345 CAGAACCAAGCTTGGATTCTAAGAGGTT 1372
||||||||||||||||||||||||||||
Sbjct 155 CAGAACCAAGCTTGGATTCTAAGAGGTT 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57706721175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5