BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42150.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949105 jgi|Araly1|949105|scaffold_800992.1 1544 0.0
> Ahg949105 jgi|Araly1|949105|scaffold_800992.1
Length=994
Score = 1544 bits (836), Expect = 0.0
Identities = 935/984 (95%), Gaps = 1/984 (0%)
Strand=Plus/Plus
Query 82 TCTTCCGCCACAAGCTATGAGGAGAGTCACCGGACTTGCCGCGCGCACAATCTCATCCTC 141
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 11 TCTTCCGCCACAAGCTATGAGGAGAGTCACCGGACTTGCTGCTCGCACAATCTCATCCTC 70
Query 142 CGTCGCCATCAATTCACGTCTCACTCAATCCATGGCGATTACAACCATTTCATCCTCCGA 201
||||||||||||| | || ||| ||||| | |||||||||||||| ||||| ||||||||
Sbjct 71 CGTCGCCATCAATCCTCGGCTCTCTCAAACAATGGCGATTACAACGATTTCTTCCTCCGA 130
Query 202 ACCTATCTCCCGAAGATTCGGTGGTCTTCCAGAGATTAAAACTCCGTCTTTCGCCGGCGG 261
||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 131 ACCTATCTCCCGAAGATTCGGTGGTCTTCCAGAGATTTCAACGCCGTCTTTTGCCGGCGG 190
Query 262 AGTCGCTGGGGTTGTGTTCTTCTCTGCCGCTGCTGTATCGTCTCTTGGTCAAGAAGTTCA 321
| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 191 ATTCGCTGGGATTGTGTTTTTCTCTGCCGCTGCTGCATCGTCTCTTGGTCAAGAAGTTCA 250
Query 322 CGCTAAGGAAATGGCTCAGAAGTTTAATCCTAAAGAAGTTGTTCTGTATCAGTACGAAGC 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 251 CGCTAAGGAAATGGCTCAGAAGTTTAATCCTAAAGAAGTTGTTCTGTATCAGTACGAGGC 310
Query 382 TTGCCCTTTCTGTAACAAGGTTAAAGCGTTTTTGGATTACAACAAGATTCCATACAAGGT 441
|||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 311 TTGCCCTTTCTGCAATAAGGTTAAAGCGTTCTTGGATTACAACAAGATTCCATACAAGAT 370
Query 442 TGTTGAAGTGAATCCTATCAGTAAGAAAGAAATCAAATGGTCTGATTATAAGAAGGTGCC 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGTTGAAGTGAATCCTATCAGTAAGAAAGAAATCAAATGGTCTGATTATAAGAAGGTGCC 430
Query 502 TATTCTTACTGTAGATGGTGAACAAATGGTTGATTCTTCAGTGATAATCGATAGCTTATT 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TATTCTTACTGTAGATGGTGAACAAATGGTTGATTCTTCAGTGATAATCGATAGCTTATT 490
Query 562 CCAAAAGATGCACCCTGAAATTTCCAAGTCCGAAGATGATGAAGAGACTAAATGGCGCAA 621
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 491 CCAAAAGATGCACCCTGAAATTTCTAAGTCTGAAGAAGATGAAGAGACTAAATGGCGCAA 550
Query 622 GTGGGTGGACAACCACCTTGTGCATCTTTTGTCACCAAACATATACAGGAATACTTCAGA 681
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 551 GTGGGTGGACAATCATCTTGTGCATCTTTTGTCACCAAACATTTACAGGAATACTTCAGA 610
Query 682 GGCTCTTGAGTCCTTTGAATATATCACCACACATGGGAATTTCAGTTTCACTGAAAGATT 741
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 611 GGCTCTTGAGTCCTTTGATTACATCACCACACATGGGAACTTCAGTTTCACTGAAAGATT 670
Query 742 AGTGGCAAAGTATGCAGGAGCAACGGCAATGTACTTTGTATCAAAGAAATTGAAGAAGAA 801
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 671 AGTGGCAAAGTATGCAGGAGCAACGGCAATGTACTTTGTGTCAAAGAAATTGAAGAAAAA 730
Query 802 ATATAACATTACAGATGAACGTGCGGCTCTTTACGATGCTGCAGAGACATGGGTCGATGC 861
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 731 ATATAACATTACAGATGAACGTGCGGCTCTTTATGATGCTGCGGAGACATGGGTCGATGC 790
Query 862 CTTGAAAGAGCGTCCATACCTTGGTGGGTCAAAACCAAACTTGGGCGATCTCGCTGTATT 921
||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 791 CTTGAAAGAGCGTCCATACCTCGGTGGGTCAAAACCAAACTTGGCCGATCTTGCTGTATT 850
Query 922 CGGTGTTCTGAGGCCAATAAGGTACCTTCGATCGGGTAAGGATATGGTGGACAACACACG 981
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 851 CGGTGTTCTGAGGCCAATAAGATACCTTAGATCGGGTAAGGATATGGTGGACAACACACG 910
Query 982 CATAGGTGAATGGTATTCTCGAATGGAGAACACGGTCGGAGAACCTTCTAGGATCAAAGA 1041
||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 911 CATAGGTGAATGGTATTCTCGAATGGAGAACACAGTCGGAGAGCCTTCAAGAATCAAAGA 970
Query 1042 ATAAAGGATCATTGGTCGT-ATCT 1064
|||||||||| ||| || | ||||
Sbjct 971 ATAAAGGATCGTTGCTCTTTATCT 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5