BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42170.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916171 jgi|Araly1|916171|Al_scaffold_0008_922 1053 0.0
Ahg916172 jgi|Araly1|916172|Al_scaffold_0008_923 459 3e-128
> Ahg916171 jgi|Araly1|916171|Al_scaffold_0008_922
Length=888
Score = 1053 bits (570), Expect = 0.0
Identities = 731/809 (90%), Gaps = 10/809 (1%)
Strand=Plus/Plus
Query 307 GAAAGACTAGGAATAGCAGAAACAATACCAGCATATTTAAATCCAAAGCTCAAAAATGAA 366
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 85 GAAAGACTAGGAATAGCAGAAGCAATACCAGCATATTTAAATCCAAAGCTCAAAAATGAA 144
Query 367 GATCTTCTCAAGGGTGTGAATTTTGCTTCAGGTGGTTCTGGTTACGATCCGTTAACAGCA 426
||||||||||||||| | ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 145 GATCTTCTCAAGGGTATAAATTTCGCTTCTGGTGGTTCTGGTTACGATCCATTAACAGCT 204
Query 427 AAACTAGTGAAAGTGGTATCGTTATCAGATCAACTAAAAAATTTCCAAGAATATAAA-AA 485
|||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||| ||
Sbjct 205 AAACTAGTGAAAGTGGTATCTTTATCAGATCAACTAAAATATTTTCAAGAGTATAAAGAA 264
Query 486 TAAATTAAAGGTGATTGTTGGCGAAGAGAAAGCTAATTTCTTGGTGAAAAATAGTCTTTA 545
|||| ||||| || ||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 265 AAAATAAAAGGA-ATAGTTGGCGAAGAGAAAGCCAATTTCATAGTGAAAAATAGTCTTTA 323
Query 546 TCTTGTGGTAGCCAGCAGTAATGATATTGCTCATACCTATACGGCACGCTC-CATCAAAT 604
|| |||||||||||||||||||||||||||||||| ||||||||||| || | ||||||
Sbjct 324 CCTCGTGGTAGCCAGCAGTAATGATATTGCTCATACATATACGGCACGGTCAC-TCAAAT 382
Query 605 ATAACAAAACTTCATATGCTGATTATTTGGCTGATT-CTGCTTCTAAATTTGTCAGTGCA 663
|||||| |||||||||||||||||||||||||| || || ||||| |||||||||| | |
Sbjct 383 ATAACAGAACTTCATATGCTGATTATTTGGCTGGTTTCT-CTTCTGAATTTGTCAGAG-A 440
Query 664 -TTGTATGGACTTGGAGCTCGAAGAATCGGAGTATTTAGTGCAGTACCGGTTGGATGTGT 722
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 441 GTTATATGGACTTGGAGCTCGAAGAATCGGAGTATTTAGTGCAGTACCAGTTGGATGTGT 500
Query 723 ACCAGCAGCTAGAACACTTCGTGGAAAATTGAAGCGAAGATGCTCAGAAAAACTTAACGA 782
||||||||| |||||| ||| ||||| ||| ||||||| ||| ||||| ||||| |||||
Sbjct 501 ACCAGCAGCCAGAACAGTTCATGGAAGATTAAAGCGAAAATGTTCAGACAAACTAAACGA 560
Query 783 AGTGGCTCG-CAACTTTAACGCGAAGATATCTCCAACATTGGAAGCTTTAGGAAAAGAGT 841
||||||||| || ||| |||| ||||| | ||| |||||||| ||||||||||||||||
Sbjct 561 AGTGGCTCGTCA-CTTCAACGTAAAGATGTTTCCGACATTGGAGGCTTTAGGAAAAGAGT 619
Query 842 TGCCAGATAGCAGAGTTGTGTTAATTGACGTGTGTGACACTCTTAATGACATGATAGAAA 901
|||| ||||||| | ||| ||| |||||||| | ||||||||||||||| ||||| ||||
Sbjct 620 TGCCGGATAGCAAAATTGCGTTTATTGACGTATATGACACTCTTAATGATATGATCGAAA 679
Query 902 ACCCTAAAAACTACGGATTTGAAGTATCAAACAGAGGATGCTGTGGAACCGGATTAGTCG 961
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| | |
Sbjct 680 ACCCTAAAAACTATGGATTTGAAGTATCAAACAGAGGATGTTGTGGAACAGGATTACTTG 739
Query 962 AAGTACTATTTTTATGCAACAAAATCAATCCTTTTACATGCAAAAATTCATCTTCGTATA 1021
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 740 AAGTACTCTTTTTGTGCAACAAAATCAATCCTTTTACATGCAAAAATTCATCTTCTTATA 799
Query 1022 TTTTTTGGGATAGTTACCATCCAACAGAAAAAGCTTACCAAATAATAGTTGATAAGTTGT 1081
| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 800 TATTTTGGGACAGTTACCATCCAACAGAAAAAGCTTACCAAATTATCGTTGATAAGTTGT 859
Query 1082 TAGGAAATTACATTACGAAACTAGTCTAA 1110
||||||| ||||||| | |||||||||||
Sbjct 860 TAGGAAAATACATTAAGCAACTAGTCTAA 888
> Ahg916172 jgi|Araly1|916172|Al_scaffold_0008_923
Length=357
Score = 459 bits (248), Expect = 3e-128
Identities = 284/302 (94%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 1 ATGTCACGTTTGGTGTATGTAATATTTTTGCTTGTAGTGGTAGAAGGTAGCAGGAACACT 60
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACGTTTGGTGTATATAATCTTTTTGCTTGTAGTGGTAGAAGGTAGCAGGAACACT 60
Query 61 TTAGAACGAAATACTGAAACCAACGCAACAGAAGCCAAAGTAGAAGGTAAAGGTACAATA 120
||||| | ||||||||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 61 TTAGATCAAAATACTGAAACCAACGCATCAGAAGCCAAAGTAGAAGGTATATGTACAATA 120
Query 121 AAACTACCGCCGAATGTTACCATTCCTGGTATCATAACATTTGGAGATTCAATAGTTGAC 180
|||||||| || |||||| ||||||| ||| |||||||||||||||| |||||||| ||
Sbjct 121 AAACTACCCCCAAATGTTTCCATTCCCGGTGTCATAACATTTGGAGACTCAATAGTGGAT 180
Query 181 AGTGGAAACAATAACCACCTTCGTACAGCATTAAAATGTAACTTTCCTCCTTACGGTAAA 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AGTGGAAACAATAACCACCTCCGTACAGCATTAAAATGTAACTTTCCTCCTTATGGTAAA 240
Query 241 GATTTTCCTGGCAAAATTGCTACTGGAAGATTTTCTGATGGAAGGGTTCCATCTGATATT 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATTTTCCAGGCAAAATTGCTACTGGAAGATTTTCTGATGGAAGGGTTCCATCTGATATT 300
Query 301 GT 302
||
Sbjct 301 GT 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5