BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42180.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949103 jgi|Araly1|949103|scaffold_800990.1 1515 0.0
> Ahg949103 jgi|Araly1|949103|scaffold_800990.1
Length=994
Score = 1515 bits (820), Expect = 0.0
Identities = 935/992 (94%), Gaps = 2/992 (0%)
Strand=Plus/Plus
Query 56 TCGAAAAGTTTGTTAAAATGAATGCACACATGCTCAATCTCCTTGTCATAGTCATTTTTG 115
|||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 4 TCGAAAAGTTTGTTGAAATGAATGCACACATGCTCAATCTCCTTGCCATGGTCATCTTCG 63
Query 116 TAGTTTCTTTCGATGTCCAAGCACTCAGTCCTCACTACTACGACCATACTTGTCCACAAG 175
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 64 TAGTTACTTTCGATGTCCAAGCACTCAGTCCTCACTACTACGACCATACATGTCCACAAG 123
Query 176 CCGACCACATTGTAACCAATGCAGTCAAGAAAGCCATGTCAAACGACCAAACTGTCCCTG 235
||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 124 CCGACCACATTGTCACCAATGCAGTCAAGAAAGCCATGTCAAATGACAAAACTGTCCCTG 183
Query 236 CTGCGCTTTTGAGGATGCATTTCCACGACTGTTTCGTCAGAGGATGTGATGGCTCAGTTC 295
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 184 CCGCGCTTTTGAGGATGCATTTCCACGACTGTTTCGTCAGAGGATGTGATGGGTCAGTTC 243
Query 296 TCTTAGACTCTAAGGGGAAGAACAAAGCAGAGAAAGATGGACCTCCTAACATCTCACTCC 355
| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 244 TTTTAGACTCAAAGGGAAAGAACAAAGCAGAGAAAGATGGACCTCCTAACATATCACTAC 303
Query 356 ATGCATTTTATGTGATTGACAATGCAAAGAAGGCATTAGAAGAACAATGTCCCGGTATCG 415
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 304 ATGCATTTTATGTGATTGACAATGCAAAGAAGGCATTAGAAGAGCAATGTCCCGGTATCG 363
Query 416 TCTCTTGCGCCGACATTCTTTCACTTGCGGCAAGAGATGCTGTCGCTCTCTCAGGAGGGC 475
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 364 TCTCTTGCGCCGACATTCTTTCACTCGCTGCAAGAGATGCTGTCGCTCTCTCAGGAGGGC 423
Query 476 CTACATGGGCAGTGCCAAAAGGGAGAAAAGATGGAAGAATATCAAAGGCAATAGAAACAA 535
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 424 CAACATGGGCAGTGCCAAAAGGTAGAAAAGATGGAAGAATTTCAAAGGCAATAGAAACAA 483
Query 536 GACAACTACCAGCTCCTACTTTCAACATTTCTCAATTGCGTCAAAATTTTGGCCAAAGAG 595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 484 GACAACTACCAGCTCCTACTTTCAACATCTCTCAATTGCGTCAAAATTTTGGCCAAAGAG 543
Query 596 GCCTCTCTATGCATGATCTTGTTGCTCTCTCTGGAGGTCATACACTAGGATTCGCCCACT 655
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 544 GCCTCTCTATGCATGATCTTGTTGTTCTCTCTGGAGGTCACACACTAGGATTCGCCCACT 603
Query 656 GTTCATCGTTCCAGAATAGGCTCCATAAATTCAACACACAAAAGGAGGTTGACCCAACAC 715
| |||||||||||||||||||||||||| ||||| |||||||||||| |||| ||||| |
Sbjct 604 GCTCATCGTTCCAGAATAGGCTCCATAACTTCAATACACAAAAGGAGATTGATCCAACGC 663
Query 716 TAAACCCCTCATTCGCAGCCAGGTTGGAGGGAGTGTGCCCGGCCCATAACACGGTGAAGA 775
||||||| || || ||||| || |||||||||||||| || |||||||||| ||||||||
Sbjct 664 TAAACCCATCGTTAGCAGCAAGCTTGGAGGGAGTGTGTCCAGCCCATAACAAGGTGAAGA 723
Query 776 ATGCTGGATCGAACATGGATGGAACCGTGACGTCATTCGACAATATCTACTACAAGATGC 835
| |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 724 ACGCTGGATCGACCTTGGATGGAACCGTGACGTCATTTGACAATATCTACTACAAGATGC 783
Query 836 TTATCCAAGGCAAGTCACTATTCTCATCCGACGAATCGCTTCTTGCAGTACCCTCTACTA 895
|||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct 784 TTATTCAAGGCAAGTCACTATTCTCATCCGACGAAGCGCTTCTCGCAGTGCCCTCTACTA 843
Query 896 AGAAACTCGTGGCCAAA-TATGCAAATTCCAACGAAGAGTTCGAGAGGGCTTTTGTGAAA 954
||||||||||||| ||| || || | ||||||||||||||||||||||||||||||||||
Sbjct 844 AGAAACTCGTGGC-AAAGTACGCGAGTTCCAACGAAGAGTTCGAGAGGGCTTTTGTGAAA 902
Query 955 TCGATGATCAAGATGAGTAGTATCAGTGGGAATGGCAATGAGGTCAGACTTAACTGCAGA 1014
|| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 903 TCCATGATCAAGATGAGTAGTATCAGTGGGAGTGGTAATGAGGTCAGACTTAACTGCAGA 962
Query 1015 AGGGTTCGCTAGAATCTCAATCTACGCTTCCA 1046
|||||||||||||||| |||||||||||||||
Sbjct 963 AGGGTTCGCTAGAATCACAATCTACGCTTCCA 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5