BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42190.1
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949102 jgi|Araly1|949102|scaffold_800989.1 817 0.0
> Ahg949102 jgi|Araly1|949102|scaffold_800989.1
Length=551
Score = 817 bits (442), Expect = 0.0
Identities = 512/545 (94%), Gaps = 8/545 (1%)
Strand=Plus/Plus
Query 123 AAAACC-AATGTCGACGGTGAGAAAAATCACTCTTAAGAGTTCGGATGGCGAAAACTTCG 181
|||||| ||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct 14 AAAACCAAATGTCGACGGTGAGAAAAATCACTCTAAAAAGCTCCGATGGCGAAAACTTCG 73
Query 182 AAATTGACGAAGCGGTGGCGCTAGAGTCACAAACCATCAAACATATGATTGAAGATGACT 241
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 74 AAATTGACGAAGCGGTGGCGCTAGAATCACAAACCATCAAGCATATGATTGAAGACGACT 133
Query 242 GTACCGATAATGGTATCCCTCTCCCTAATGTCACAAGCAAGATCCTTTCGAAGGTGATTG 301
|| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 134 GTGCCGATAATGGTATCCCTCTCCCTAATGTCACCAGCAAAATCCTTTCGAAGGTGATTG 193
Query 302 AGTACTGTAAGAGACATGTCGAAGCTGCTGAGAAATCCGAAACCACGGCCGATGCTGCTG 361
|||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 194 AGTACTGTAAGAAACATGTCGAAGCTGCTGCGAAATCCGAAACCACCGCCGATGCTGCTG 253
Query 362 CTGCTACTACTACCACCACCGTCGCGTCGGGTTCTAGTGATGAAGATCTCAAGACTTGGG 421
||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 254 CTG---CTACT---ACCACCGTCGCGTCGGGTTCTAGTGACGAAGATCTTAAGACTTGGG 307
Query 422 ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGGCTGCTAACT 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 308 ATTCTGAGTTTATCAAAGTTGATCAGGGCACTCTCTTCGATCTTATCCTGGCTGCTAATT 367
Query 482 ACTTGAATATCAAGGGACTGTTGGACTTGACTTGCCAGACAGTGGCTGATATGATTAAAG 541
|| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 368 ACCTGAATATCAAGGGACTGTTGGACTTGACCTGCCAAACAGTGGCCGATATGATTAAAG 427
Query 542 GAAAAACCCCAGAAGAAATCCGTAAGACGTTCAATATCAAGAACGACTTCACGCCAGAGG 601
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 428 GTAAAACCCCAGAAGAAATCCGCAAGACTTTCAATATCAAGAACGACTTCACGCCAGAGG 487
Query 602 AAGAAGAAGAGGTTCGCCGTGAGAATCAGTGGGCGTTTGAATGAAGAAAAATGAAGACCT 661
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 488 AAGAAGAAGAGGTTCGCCGTGAGAATCAGTGGGCATTTGAATGAATAAAAATGAAGACCT 547
Query 662 AGGTT 666
||||
Sbjct 548 -GGTT 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35225575308
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5