BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42200.1
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497165 jgi|Araly1|497165|fgenesh2_kg.25__1__AT5G42200.1 854 0.0
Ahg494813 jgi|Araly1|494813|fgenesh2_kg.8__629__AT5G42200.1 843 0.0
> Ahg497165 jgi|Araly1|497165|fgenesh2_kg.25__1__AT5G42200.1
Length=697
Score = 854 bits (462), Expect = 0.0
Identities = 644/727 (89%), Gaps = 31/727 (4%)
Strand=Plus/Plus
Query 34 AGAGAGCAAGAGACGGTGTAAAGATGCACTACACACGCATCTCGCCGGCTTTAGTACCAT 93
||||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct 1 AGAGAGCAATAGACGGTGT-AAGATGCACTACACACGCATCTCACCGGTTTTAGTACCAT 59
Query 94 CTCTATCACCAACCGCCGCGGCTGAATCTAGCGGTGGTGGGACGATGATAGCTACTGTTT 153
||| ||||||| |||| | |||||||||||| |||||| ||||||||||||| ||||
Sbjct 60 CTCCGCCACCAACAACCGCCGTTGAATCTAGCGGCGGTGGGCCGATGATAGCTACCGTTT 119
Query 154 TCATGGCCCTTCTCCTCCCCTGCGTCGGCATGTGCATCGTCTTCCTAATCTATCTATTCC 213
|||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 120 TCATGGCCCTCCTCCTTCCTTGCGTTGGCATGTGCATCGTCTTCCTAATATATCTCTTCC 179
Query 214 TCTTGTGGTGCTCCACACGGCGTCGTATCGAACGCCTTCGATTTGCTGAACCGGTTAAAC 273
|||||||||| |||||||| |||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 180 TCTTGTGGTGTTCCACACGTCGTCGTATTGAACGTCTTCGATTTGCGGAACCTGTTAAAC 239
Query 274 CGGTCACAGGTAAAGGCCTTTCGGTGTTGGAGCTCGAGAAAATCCCTAAACTCACCGGAA 333
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 CGGTCACCGGTAAAGGCCTTTCGGTGTTAGAGCTCGAGAAAATCCCTAAACTCACCGGAA 299
Query 334 GAGAGCTAGCCGTAATAGCTAGATCAACGGAATGTGCTGTTTGCCTTGAAGATATAGAGA 393
|||||| ||| |||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 300 AAGAGCTTGCCATAATAGCTAGGTCGACGGAGTGTGCCGTTTGCCTTGAAGATATAGAGA 359
Query 394 GTGGTCAATCGACTCGTCTAGTTCCCGGTTGCAACCATGGGTTTCACCAATTATGTGCTG 453
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GTGGTCAATCGGGTCGTCTAGTTCCCGGTTGCAACCATGGGTTTCACCGATTATGTGCTG 419
Query 454 ATACGTGGCTATCTAACCACACGGTTTGTCCAGTTTGCCGCGCCGAGCTGGCTCCGAACC 513
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACACGTGGCTATCTAACCACACGGTTTGTCCAGTTTGCCGCGCCGAGCTGGCTCCGAACA 479
Query 514 TACCTCAATGTAATGAAAATCAAAGTCCATGTTAGAAACAGAAt-tttcaaaaacattct 572
| |||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||||
Sbjct 480 TTCCTCAATGTAATGAAAATCAAAGTCCATGTTAAAAACAGAATCTTT-AAAATTATTCT 538
Query 573 ttccttcttttttactcgttttgtgtacttctcttgtttttcccttttcttagttttgtg 632
|||||||||||||||||||||||||||||| || | || ||||||||
Sbjct 539 TTCCTTCTTTTTTACTCGTTTTGTGTACTT-----GT----C--TT------GTTTTGTG 581
Query 633 tAAGCGTTATAGAGAGAGAAGTTTCCAGGTTGTAACTAGCCTTGTTGtttttttttGTAC 692
||||||||||||||||| | |||||||||| | ||| ||||| |||| || ||||
Sbjct 582 TAAGCGTTATAGAGAGA-A-GTTTCCAGGTA-T---TAG--TTGTT-TTTTGTT--GTAC 630
Query 693 ATGAAATTAGTTTTAGAGTAAATTACGAAATTTACAGTTATGTCATTGTATTTACAACAA 752
||||||||| |||||||||||| || ||||||| |||| || |||||||||||||||||
Sbjct 631 ATGAAATTAATTTTAGAGTAAAGTAAAAAATTTATAGTTTTGCCATTGTATTTACAACAA 690
Query 753 TTTTTCT 759
|||||||
Sbjct 691 TTTTTCT 697
> Ahg494813 jgi|Araly1|494813|fgenesh2_kg.8__629__AT5G42200.1
Length=681
Score = 843 bits (456), Expect = 0.0
Identities = 628/707 (89%), Gaps = 27/707 (4%)
Strand=Plus/Plus
Query 54 AAGATGCACTACACACGCATCTCGCCGGCTTTAGTACCATCTCTATCACCAACCGCCGCG 113
||||||||||||||||||||||| |||| |||||||||||||| ||||||| ||||
Sbjct 1 AAGATGCACTACACACGCATCTCACCGGTTTTAGTACCATCTCCGCCACCAACAACCGCC 60
Query 114 GCTGAATCTAGCGGTGGTGGGACGATGATAGCTACTGTTTTCATGGCCCTTCTCCTCCCC 173
| |||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| ||
Sbjct 61 GTTGAATCTAGCGGCGGTGGGCCGATGATAGCTACCGTTTTCATGGCCCTCCTCCTTCCT 120
Query 174 TGCGTCGGCATGTGCATCGTCTTCCTAATCTATCTATTCCTCTTGTGGTGCTCCACACGG 233
||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 121 TGCGTTGGCATGTGCATCGTCTTCCTAATATATCTCTTCCTCTTGTGGTGTTCCACACGT 180
Query 234 CGTCGTATCGAACGCCTTCGATTTGCTGAACCGGTTAAACCGGTCACAGGTAAAGGCCTT 293
|||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 181 CGTCGTATTGAACGTCTTCGATTTGCGGAACCTGTTAAACCGGTCACCGGTAAAGGCCTT 240
Query 294 TCGGTGTTGGAGCTCGAGAAAATCCCTAAACTCACCGGAAGAGAGCTAGCCGTAATAGCT 353
|||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 241 TCGGTGTTAGAGCTCGAGAAAATCCCTAAACTCACCGGAAAAGAGCTTGCCATAATAGCT 300
Query 354 AGATCAACGGAATGTGCTGTTTGCCTTGAAGATATAGAGAGTGGTCAATCGACTCGTCTA 413
|| || ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 AGGTCGACGGAGTGTGCCGTTTGCCTTGAAGATATAGAGAGTGGTCAATCGGGTCGTCTA 360
Query 414 GTTCCCGGTTGCAACCATGGGTTTCACCAATTATGTGCTGATACGTGGCTATCTAACCAC 473
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 361 GTTCCCGGTTGCAACCATGGGTTTCACCGATTATGTGCTGACACGTGGCTATCTAACCAC 420
Query 474 ACGGTTTGTCCAGTTTGCCGCGCCGAGCTGGCTCCGAACCTACCTCAATGTAATGAAAAT 533
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 421 ACGGTTTGTCCAGTTTGCCGCGCCGAGCTGGCTCCGAACATTCCTCAATGTAATGAAAAT 480
Query 534 CAAAGTCCATGTTAGAAACAGAAt-tttcaaaaacattctttccttcttttttactcgtt 592
|||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 481 CAAAGTCCATGTTAAAAACAGAATCTTT-AAAATTATTCTTTCCTTCTTTTTTACTCGTT 539
Query 593 ttgtgtacttctcttgtttttcccttttcttagttttgtgtAAGCGTTATAGAGAGAGAA 652
|||||||||| |||||||||| || || || |||||||||||||||| |
Sbjct 540 TTGTGTACTTGTCTTGTTTTT---TT------GT---GT--AAGCGTTATAGAGAGA-A- 583
Query 653 GTTTCCAGGTTGTAACTAGCCTTGTTGtttttttttGTACATGAAATTAGTTTTAGAGTA 712
|||||||||| | ||| ||||| |||| || ||||||||||||| ||||||||||
Sbjct 584 GTTTCCAGGTA-T---TAG--TTGTT-TTTTGTT--GTACATGAAATTAATTTTAGAGTA 634
Query 713 AATTACGAAATTTACAGTTATGTCATTGTATTTACAACAATTTTTCT 759
|| || ||||||| |||| || ||||||||||||||||||||||||
Sbjct 635 AAGTAAAAAATTTATAGTTTTGCCATTGTATTTACAACAATTTTTCT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28249081497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5