BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42210.1
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331182 jgi|Araly1|331182|fgenesh1_pm.C_scaffold_8000525 1389 0.0
Ahg949096 jgi|Araly1|949096|scaffold_800983.1 1304 0.0
Ahg918714 jgi|Araly1|918714|Al_scaffold_0387_1 898 0.0
Ahg949097 jgi|Araly1|949097|scaffold_800984.1 641 0.0
> Ahg331182 jgi|Araly1|331182|fgenesh1_pm.C_scaffold_8000525
Length=1287
Score = 1389 bits (752), Expect = 0.0
Identities = 916/992 (92%), Gaps = 24/992 (2%)
Strand=Plus/Plus
Query 49 ATGGAGGAAACGACGACCTTCCATGGACTAGGACACCTCTTCATT-ACAATCTTCTTGTA 107
|||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 1 ATGGAGGAAACGACAACCTTTCATGGACTAGGACACCTCTTC-TTCACAATCTTCTTGTA 59
Query 108 CTGCTTCTCATCATTCATCGTGGCTCCGGTGATAACCGACATCAGCATGGCTGCGCTATG 167
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 60 CTGCTTCTCATCATTCATCGTGGCTCCTGCGATAACCGATATCAGCATGGCTGCGCTATG 119
Query 168 TCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAACAAGTTATCAC 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAACAAGTTATCAC 179
Query 228 GGGAGTGGGATCATTGATTATGATGCCATTGGTGGGAAGCTTGTCAGACAAGCATGGGAG 287
|||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 180 GGGAGTGGGATCGTTGATGATGATGCCATTGATGGGAAGCTTGTCGGACAAGCATGGTAG 239
Query 288 AAAATGTTTGCTTACTCTTCCAATGACACTCAACATTTTACCTCTTGTGACATTAGCGTA 347
||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 240 AAAATGTTTGCTTACTCTTCCAATGACACTCCACATTTTGCCTCTTGCGACATTAGCGTA 299
Query 348 TAGTAG-AG-GGG-CAACCATCTTCTACATGTACTATGTACTCAAGACTCTC-ACTTCGA 403
||||| || ||| | ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 300 TAGTACTAGAGGGACGACCATCTTCTACATGTACTATGTACTCAAGACT-TCCACTTCGA 358
Query 404 TAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCGTACGTGGCTGATAATGTACCAG 463
||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| |||
Sbjct 359 TAGTTTGTGAAGGAACTGTTTTTTGTCTTGCCCTTGCTTACGTGGCTGATAATGTATCAG 418
Query 464 AAGGGAGACGAGCCTCCGCATTTGGGATACTTACCGGGATTACATCATGTGCATTCGTTT 523
|| ||||||||| |||||| |||| ||||||||||| ||||||||||| ||||||||||
Sbjct 419 AAAGGAGACGAGGCTCCGCGTTTGCAATACTTACCGGAATTACATCATGCGCATTCGTTT 478
Query 524 GCGCCAATCTTTCTGCTCGATTTTTATCTATTGGC-GTGACATTTCAG--C--AGCA--A 576
| |||||||||| |||||||||||||||||||| | | ||||| |||| | | || |
Sbjct 479 GTGCCAATCTTTGTGCTCGATTTTTATCTATTG-CTGCGACATATCAGGTCGCAACAGGA 537
Query 577 -TGGGAATTTTATCAACGTTGTATATGAGGCTTTTCCTACCGGATTCGATCCGAGACAAT 635
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGGGAATTTTATCATTGTTGTATATGAGGCTTTTCCTACCGGATTCGATCCGAGACAAT 597
Query 636 AGCCTCGGTGCTCCCATTGTTATAAATGAGAAATTGAGTTC-TCCTTTACTTGAAGATTG 694
|||||||||||||| |||||||||| |||| ||||||||| || |||||||||||||||
Sbjct 598 AGCCTCGGTGCTCCTATTGTTATAAGCGAGACATTGAGTTCCTC-TTTACTTGAAGATTG 656
Query 695 TCCAGGACATAGAAATAGGATATTTAGAGCAATTCGTTTGGTACATGAAATGGCTTCTCT 754
||| |||||||||||||| |||||||||||||||| || ||||| ||||||||| |||||
Sbjct 657 TCCTGGACATAGAAATAGAATATTTAGAGCAATTCATTCGGTACGTGAAATGGCATCTCT 716
Query 755 AATGAGAAGTAGCGTTCCACTTTTTCAAGTTGCGATGGTATCATTCTTCAGTAGTCTTGC 814
| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 ATTGAGAAGTAGCGTTCCATTTTTTCAAGTTGCGATGGTATCATTCTGCAGTAGTCTTGC 776
Query 815 TGAGGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAA 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGAGGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAA 836
Query 875 AGACCAGTTTGCAGACTTGATGATCATAGTT-GGCGCATCTGGATCTATTTCACAGTTGC 933
|||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||
Sbjct 837 AGACCAGTTTGCAGACTTGATGATCATA-TCAGGCGCAACCGGATCTATTTCACAGTTGC 895
Query 934 TCTTTATGCCCGTTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTT 993
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTTTTATGCCCATTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTT 955
Query 994 TCTTTGGTTGTGCCCATATGTTCC-TACTATG 1024
|||||||| |||||||| ||||| || ||||
Sbjct 956 TCTTTGGTGGTGCCCAT--GTTCCATA-TATG 984
Score = 455 bits (246), Expect = 5e-127
Identities = 294/317 (93%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 1044 GTTCCATATATGGCAGCCATATTTGCACTTTTCTCAATATTTCCTTCA-TCGTGTATGCG 1102
|||||||||||||||||||||||| ||||||||||| ||||||| || || ||||||||
Sbjct 973 GTTCCATATATGGCAGCCATATTTTCACTTTTCTCAGTATTTCC-ACATTCATGTATGCG 1031
Query 1103 AAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGAATTATTTC 1162
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1032 AAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGGATTATTTC 1091
Query 1163 AAGCATATG-TTCCCTTGCAAATGTCATTTCCCCGCTAGCATTTTCACCTCTAACAGATT 1221
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1092 AAGCATA-GATTCCCTTGCAAATGTCATTTCCCCGCTTGCATTTTCACCTCTAACAGATT 1150
Query 1222 GGTTTCTGTCTGAAAGAGCCCCATTTAATTTCCCAGGGTTCAGTATAATGTGTGCGGGAT 1281
||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1151 GGTTTCTATCTGAAAGGGCTCCATTTAATTTCCTAGGGTTCAGTATAATGTGTGCGGGGT 1210
Query 1282 TTGCCATGACTATAGCTTTCATCCAAAGCCTGATGATCAGAGCAGCAACACCAATATCAG 1341
|| |||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
Sbjct 1211 TTATGATGACTATAGCTTTCATCCAAAGCCTCATGATCAGAGCAACAACTCCAATATCGG 1270
Query 1342 TTATGGGATCTCCATAA 1358
||||||||||||||||
Sbjct 1271 ATATGGGATCTCCATAA 1287
> Ahg949096 jgi|Araly1|949096|scaffold_800983.1
Length=889
Score = 1304 bits (706), Expect = 0.0
Identities = 830/891 (93%), Gaps = 4/891 (0%)
Strand=Plus/Plus
Query 490 ATACTTACCGGGATTACATCATGTGCATTCGTTTGCGCCAATCTTT-CTGCTCGATTTTT 548
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1 ATACTTACCGGGATTACATCATGTGCATTCGTTTGCGCCACTCTTTGC-GCTCGATTTTT 59
Query 549 ATCTATTGGCGTGACATTTCAGCAGCAATGGGAATTTTATCAACGTTGTATATGAGGCTT 608
|||||||| | |||||||||||||||| | ||||||||||||| ||||||||||| ||
Sbjct 60 ATCTATTGCCACCACATTTCAGCAGCAATAGCAATTTTATCAACGCTGTATATGAGGGTT 119
Query 609 TTCCTACCGGATTCGATCCGAGACAATAGCCTCGGTGCTCCCATTGTTATAAATGAGAAA 668
|||||||| |||||||||||||| ||||||||||||| ||||| | || ||| |||||||
Sbjct 120 TTCCTACCAGATTCGATCCGAGATAATAGCCTCGGTGTTCCCAGTATTTTAAGTGAGAAA 179
Query 669 TTGAGTTCTCCTTTACTTGAAGATTGTCCAGGACATAGAAATAGGATATTTAGAGCAATT 728
|| |||||||| ||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 180 TTAAGTTCTCCATTACTTGAAGATTGTCCTGCACATAGAAATAGAATATTTAGAGCAATT 239
Query 729 CGTTTGGTACATGAAATGGCTTCTCTAATGAGAAGTAGCGTTCCACTTTTTCAAGTTGCG 788
|| | |||| |||||||| ||| |||||| ||| ||||||||||||| |||||||||
Sbjct 240 CGATCAGTACGGGAAATGGCATCTTTAATGAAAAGCAGCGTTCCACTTTCACAAGTTGCG 299
Query 789 ATGGTATCATTCTTCAGTAGTCTTGCTGAGGCAGGTCTACATGCTTCATCTATGTACTAT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGGTATCATTCTTCAGTAGTCTTGCTGAGGCAGGTCTACATGCTTCATCTATGTACTAT 359
Query 849 TTAAAGGCCAAGTTTCACTTTAACAAAGACCAGTTTGCAGACTTGATGATCATAGTTGGC 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 TTAAAGGCCAAGTTTCACTTTAACAAAGACCAGTTTGCAGACTTGATGATCATATTTGGC 419
Query 909 GCATCTGGATCTATTTCACAGTTGCTCTTTATGCCCGTTCTAGTTCCTGCTTTAAAAGAG 968
||| | |||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 420 GCAGCCGGATCTATTTCACAGTTGCTCTTTATGCCCATTCTAGTCCCTGCTTTAAAAGAG 479
Query 969 GAGAGACTGCTCTCAATTGGTCTTTTCTTTGGTTGTGCCCATATGTTCCTACTATGTGTG 1028
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 480 GAGAGACTGCTCTCAATTGGTCTTTTCTTTGGTTGTGCCCATATGTTCTTGCTATGTGTG 539
Query 1029 GCATGGTCCTCATGGGTTCCATATATGGCAGCCATATTTGCACTTTTCTCAATATTTCCT 1088
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 GCATGGTCCTCATGGGTTCCATATATGGCAGCCATATTTGCATTTTTCTCAATATTTCCA 599
Query 1089 TCA-TCGTGTATGCGAAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGC 1147
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 -CAATCGTGTATGCGAAGCATTGTCTCCAAACAAGTAGAATCATATGAACAGGGGAAAGC 658
Query 1148 CCAAGGAATTATTTCAAGCATATGTTCCCTTGCAAATGTCATTTCCCCGCTAGCATTTTC 1207
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 CCAAGGGATTATTTCAAGCATATGTTCCCTTGCAAATGTCATTTCCCCGCTTGCATTTTC 718
Query 1208 ACCTCTAACAGATTGGTTTCTGTCTGAAAGAGCCCCATTTAATTTCCCAGGGTTCAGTAT 1267
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 719 ACCTCTAACAGATTGGTTTCTGTCAGAAAGAGCCCCATTTAATTTCCCAGGATTCAGTAT 778
Query 1268 AATGTGTGCGGGATTTGCCATGACTATAGCTTTCATCCAAAGCCTGATGATCAGAGCAGC 1327
|||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |
Sbjct 779 AATGTGTGCGGGATTTACGATGACTATAGCTTTCATCCAAAGCCTCATGATCAGAGCAAC 838
Query 1328 AACACCAATATCAGTTATGGGATCTCCATAACACAGTTTCCTCAAAACCAT 1378
||| |||||||||| |||||||||||||||| ||||| || ||||||||
Sbjct 839 AACTCCAATATCAGATATGGGATCTCCATAATGCAGTTAGCTTAAAACCAT 889
> Ahg918714 jgi|Araly1|918714|Al_scaffold_0387_1
Length=717
Score = 898 bits (486), Expect = 0.0
Identities = 598/650 (92%), Gaps = 16/650 (2%)
Strand=Plus/Plus
Query 639 CTCGGTGCTCCCATTGTTATAAATGAGAAATTGAGTT-CTCCTTTACTTGAAGATTGTCC 697
||||||||||| |||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct 1 CTCGGTGCTCCTATTGTTATAAGCGAGACATTGAGTTCCT-CTTTACTTGAAGATTGTCC 59
Query 698 AGGACATAGAAATAGGATATTTAGAGCAATTCGTTTGGTACATGAAATGGCTTCTCTAAT 757
|||||||||||||| |||||||||||||||| || ||| | ||||||||| |||||| |
Sbjct 60 TGGACATAGAAATAGAATATTTAGAGCAATTCATTCGGTGCGTGAAATGGCCTCTCTATT 119
Query 758 GAGAAGTAGCGTTCCACTTTTTCAAGTTGCGATGGTATCATTCTTCAGTAGTCTTGCTGA 817
||||||| |||||| |||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 120 GAGAAGT---GTTCCATTTTTTCAAATTGCGATGGTATTATTCTGCAGTAGTCTTGCTGA 176
Query 818 GGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAAAGA 877
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GGCTGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAAAGA 236
Query 878 CCAGTTTGCAGACTTGATGATCATAGTT-GGCGCATCTGGATCTATTTCACAGTTGCTCT 936
||||||||||||||||||||||||| | |||||| | |||||||||||||||||||| |
Sbjct 237 CCAGTTTGCAGACTTGATGATCATA-TCAGGCGCAACGGGATCTATTTCACAGTTGCTTT 295
Query 937 TTATGCCCGTTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTTTCT 996
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTATGCCCATTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTTTCT 355
Query 997 TTGGTTGTGCCCATATGTTCCT-ACTATGTGTGGCATGGTCCTCATGGGTTCCATATATG 1055
||||| | |||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 356 TTGGTGGCGCCCATATGTTCTTGA-TATGTGTGGCATGGTCCTCATGGGTTCCATATATG 414
Query 1056 GCAGCCATATTTGCACTTTTCTCAATATTTCCTTCAT-CGTGTATGCGAAGCATTGTCTC 1114
|||||||||||| ||||||||||| ||||||| ||| | ||||||||||||||||||||
Sbjct 415 GCAGCCATATTTTCACTTTTCTCAGTATTTCCA-CATTCATGTATGCGAAGCATTGTCTC 473
Query 1115 CAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGAATTATTTCAAGCATATG-TT 1173
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 474 CAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGGATTATTTCAAGCATA-GATT 532
Query 1174 CCCTTGCAAATGTCATTTCCCCGCTAGCATTTTCACCTCTAACAGATTGGTTTCTGTCTG 1233
||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||
Sbjct 533 CCCTTGCAAATGTCATTTCCCCGCTTGCATTTTCACCTCTAACA--T-GGTTTCTATCTG 589
Query 1234 AAAGAGCCCCATTTAATTTCCCAGGGTTCAGTATAATGTGTGCGGGATTT 1283
|||| || ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 590 AAAGGGCTCCATTTAATTTCCTAGGGTTCAGTATAATGTGTGCGGGGTTT 639
> Ahg949097 jgi|Araly1|949097|scaffold_800984.1
Length=486
Score = 641 bits (347), Expect = 0.0
Identities = 390/411 (95%), Gaps = 2/411 (0%)
Strand=Plus/Plus
Query 39 TCTCTTAAAAATGGAGGAAACGACGACCTTCCATGGACTAGGACACCTCTTCATT-ACAA 97
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 13 TCTCTTAACAATGGAGGAAACGACGACCTTTCATGGACTAGGACACCTCTTC-TTCACAA 71
Query 98 TCTTCTTGTACTGCTTCTCATCATTCATCGTGGCTCCGGTGATAACCGACATCAGCATGG 157
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 72 TCTTCTTGTACTGCTTCTCATCATTCATCGTGGCTCCTGCGATAACCGATATCAGCATGG 131
Query 158 CTGCGCTATGTCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAAC 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 CTGCGCTATGTCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAAC 191
Query 218 AAGTTATCACGGGAGTGGGATCATTGATTATGATGCCATTGGTGGGAAGCTTGTCAGACA 277
|||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||
Sbjct 192 AAGTTATCACGGGAGTGGGATCGTTGATGATGATGCCATTGATGGGAAGCTTGTCGGACA 251
Query 278 AGCATGGGAGAAAATGTTTGCTTACTCTTCCAATGACACTCAACATTTTACCTCTTGTGA 337
||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct 252 AGCATGGTAGAAAATGTTTGCTTACTCTTCCAATGACACTCCACATTTTGCCTCTTGCGA 311
Query 338 CATTAGCGTATAGTAGAGGGGCAACCATCTTCTACATGTACTATGTACTCAAGACTCTCA 397
|||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||
Sbjct 312 CATTAGCGTATAGTAGAGGGACGACCATCTTCTACATTTACTATGTACTCAAGACTTTCA 371
Query 398 CTTCGATAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCGTACGTGG 448
||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 372 CTTCGATAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCTTATGTGG 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62886994495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5