BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42210.1 Length=1677 Score E Sequences producing significant alignments: (Bits) Value Ahg331182 jgi|Araly1|331182|fgenesh1_pm.C_scaffold_8000525 1389 0.0 Ahg949096 jgi|Araly1|949096|scaffold_800983.1 1304 0.0 Ahg918714 jgi|Araly1|918714|Al_scaffold_0387_1 898 0.0 Ahg949097 jgi|Araly1|949097|scaffold_800984.1 641 0.0 > Ahg331182 jgi|Araly1|331182|fgenesh1_pm.C_scaffold_8000525 Length=1287 Score = 1389 bits (752), Expect = 0.0 Identities = 916/992 (92%), Gaps = 24/992 (2%) Strand=Plus/Plus Query 49 ATGGAGGAAACGACGACCTTCCATGGACTAGGACACCTCTTCATT-ACAATCTTCTTGTA 107 |||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| Sbjct 1 ATGGAGGAAACGACAACCTTTCATGGACTAGGACACCTCTTC-TTCACAATCTTCTTGTA 59 Query 108 CTGCTTCTCATCATTCATCGTGGCTCCGGTGATAACCGACATCAGCATGGCTGCGCTATG 167 ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| Sbjct 60 CTGCTTCTCATCATTCATCGTGGCTCCTGCGATAACCGATATCAGCATGGCTGCGCTATG 119 Query 168 TCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAACAAGTTATCAC 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAACAAGTTATCAC 179 Query 228 GGGAGTGGGATCATTGATTATGATGCCATTGGTGGGAAGCTTGTCAGACAAGCATGGGAG 287 |||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||| || Sbjct 180 GGGAGTGGGATCGTTGATGATGATGCCATTGATGGGAAGCTTGTCGGACAAGCATGGTAG 239 Query 288 AAAATGTTTGCTTACTCTTCCAATGACACTCAACATTTTACCTCTTGTGACATTAGCGTA 347 ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| Sbjct 240 AAAATGTTTGCTTACTCTTCCAATGACACTCCACATTTTGCCTCTTGCGACATTAGCGTA 299 Query 348 TAGTAG-AG-GGG-CAACCATCTTCTACATGTACTATGTACTCAAGACTCTC-ACTTCGA 403 ||||| || ||| | ||||||||||||||||||||||||||||||||| || ||||||| Sbjct 300 TAGTACTAGAGGGACGACCATCTTCTACATGTACTATGTACTCAAGACT-TCCACTTCGA 358 Query 404 TAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCGTACGTGGCTGATAATGTACCAG 463 ||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| ||| Sbjct 359 TAGTTTGTGAAGGAACTGTTTTTTGTCTTGCCCTTGCTTACGTGGCTGATAATGTATCAG 418 Query 464 AAGGGAGACGAGCCTCCGCATTTGGGATACTTACCGGGATTACATCATGTGCATTCGTTT 523 || ||||||||| |||||| |||| ||||||||||| ||||||||||| |||||||||| Sbjct 419 AAAGGAGACGAGGCTCCGCGTTTGCAATACTTACCGGAATTACATCATGCGCATTCGTTT 478 Query 524 GCGCCAATCTTTCTGCTCGATTTTTATCTATTGGC-GTGACATTTCAG--C--AGCA--A 576 | |||||||||| |||||||||||||||||||| | | ||||| |||| | | || | Sbjct 479 GTGCCAATCTTTGTGCTCGATTTTTATCTATTG-CTGCGACATATCAGGTCGCAACAGGA 537 Query 577 -TGGGAATTTTATCAACGTTGTATATGAGGCTTTTCCTACCGGATTCGATCCGAGACAAT 635 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 ATGGGAATTTTATCATTGTTGTATATGAGGCTTTTCCTACCGGATTCGATCCGAGACAAT 597 Query 636 AGCCTCGGTGCTCCCATTGTTATAAATGAGAAATTGAGTTC-TCCTTTACTTGAAGATTG 694 |||||||||||||| |||||||||| |||| ||||||||| || ||||||||||||||| Sbjct 598 AGCCTCGGTGCTCCTATTGTTATAAGCGAGACATTGAGTTCCTC-TTTACTTGAAGATTG 656 Query 695 TCCAGGACATAGAAATAGGATATTTAGAGCAATTCGTTTGGTACATGAAATGGCTTCTCT 754 ||| |||||||||||||| |||||||||||||||| || ||||| ||||||||| ||||| Sbjct 657 TCCTGGACATAGAAATAGAATATTTAGAGCAATTCATTCGGTACGTGAAATGGCATCTCT 716 Query 755 AATGAGAAGTAGCGTTCCACTTTTTCAAGTTGCGATGGTATCATTCTTCAGTAGTCTTGC 814 | ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 717 ATTGAGAAGTAGCGTTCCATTTTTTCAAGTTGCGATGGTATCATTCTGCAGTAGTCTTGC 776 Query 815 TGAGGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAA 874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TGAGGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAA 836 Query 875 AGACCAGTTTGCAGACTTGATGATCATAGTT-GGCGCATCTGGATCTATTTCACAGTTGC 933 |||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||| Sbjct 837 AGACCAGTTTGCAGACTTGATGATCATA-TCAGGCGCAACCGGATCTATTTCACAGTTGC 895 Query 934 TCTTTATGCCCGTTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTT 993 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 TTTTTATGCCCATTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTT 955 Query 994 TCTTTGGTTGTGCCCATATGTTCC-TACTATG 1024 |||||||| |||||||| ||||| || |||| Sbjct 956 TCTTTGGTGGTGCCCAT--GTTCCATA-TATG 984 Score = 455 bits (246), Expect = 5e-127 Identities = 294/317 (93%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 1044 GTTCCATATATGGCAGCCATATTTGCACTTTTCTCAATATTTCCTTCA-TCGTGTATGCG 1102 |||||||||||||||||||||||| ||||||||||| ||||||| || || |||||||| Sbjct 973 GTTCCATATATGGCAGCCATATTTTCACTTTTCTCAGTATTTCC-ACATTCATGTATGCG 1031 Query 1103 AAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGAATTATTTC 1162 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1032 AAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGGATTATTTC 1091 Query 1163 AAGCATATG-TTCCCTTGCAAATGTCATTTCCCCGCTAGCATTTTCACCTCTAACAGATT 1221 ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1092 AAGCATA-GATTCCCTTGCAAATGTCATTTCCCCGCTTGCATTTTCACCTCTAACAGATT 1150 Query 1222 GGTTTCTGTCTGAAAGAGCCCCATTTAATTTCCCAGGGTTCAGTATAATGTGTGCGGGAT 1281 ||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||| | Sbjct 1151 GGTTTCTATCTGAAAGGGCTCCATTTAATTTCCTAGGGTTCAGTATAATGTGTGCGGGGT 1210 Query 1282 TTGCCATGACTATAGCTTTCATCCAAAGCCTGATGATCAGAGCAGCAACACCAATATCAG 1341 || |||||||||||||||||||||||||| |||||||||||| |||| |||||||| | Sbjct 1211 TTATGATGACTATAGCTTTCATCCAAAGCCTCATGATCAGAGCAACAACTCCAATATCGG 1270 Query 1342 TTATGGGATCTCCATAA 1358 |||||||||||||||| Sbjct 1271 ATATGGGATCTCCATAA 1287 > Ahg949096 jgi|Araly1|949096|scaffold_800983.1 Length=889 Score = 1304 bits (706), Expect = 0.0 Identities = 830/891 (93%), Gaps = 4/891 (0%) Strand=Plus/Plus Query 490 ATACTTACCGGGATTACATCATGTGCATTCGTTTGCGCCAATCTTT-CTGCTCGATTTTT 548 |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| Sbjct 1 ATACTTACCGGGATTACATCATGTGCATTCGTTTGCGCCACTCTTTGC-GCTCGATTTTT 59 Query 549 ATCTATTGGCGTGACATTTCAGCAGCAATGGGAATTTTATCAACGTTGTATATGAGGCTT 608 |||||||| | |||||||||||||||| | ||||||||||||| ||||||||||| || Sbjct 60 ATCTATTGCCACCACATTTCAGCAGCAATAGCAATTTTATCAACGCTGTATATGAGGGTT 119 Query 609 TTCCTACCGGATTCGATCCGAGACAATAGCCTCGGTGCTCCCATTGTTATAAATGAGAAA 668 |||||||| |||||||||||||| ||||||||||||| ||||| | || ||| ||||||| Sbjct 120 TTCCTACCAGATTCGATCCGAGATAATAGCCTCGGTGTTCCCAGTATTTTAAGTGAGAAA 179 Query 669 TTGAGTTCTCCTTTACTTGAAGATTGTCCAGGACATAGAAATAGGATATTTAGAGCAATT 728 || |||||||| ||||||||||||||||| | |||||||||||| ||||||||||||||| Sbjct 180 TTAAGTTCTCCATTACTTGAAGATTGTCCTGCACATAGAAATAGAATATTTAGAGCAATT 239 Query 729 CGTTTGGTACATGAAATGGCTTCTCTAATGAGAAGTAGCGTTCCACTTTTTCAAGTTGCG 788 || | |||| |||||||| ||| |||||| ||| ||||||||||||| ||||||||| Sbjct 240 CGATCAGTACGGGAAATGGCATCTTTAATGAAAAGCAGCGTTCCACTTTCACAAGTTGCG 299 Query 789 ATGGTATCATTCTTCAGTAGTCTTGCTGAGGCAGGTCTACATGCTTCATCTATGTACTAT 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 ATGGTATCATTCTTCAGTAGTCTTGCTGAGGCAGGTCTACATGCTTCATCTATGTACTAT 359 Query 849 TTAAAGGCCAAGTTTCACTTTAACAAAGACCAGTTTGCAGACTTGATGATCATAGTTGGC 908 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 360 TTAAAGGCCAAGTTTCACTTTAACAAAGACCAGTTTGCAGACTTGATGATCATATTTGGC 419 Query 909 GCATCTGGATCTATTTCACAGTTGCTCTTTATGCCCGTTCTAGTTCCTGCTTTAAAAGAG 968 ||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 420 GCAGCCGGATCTATTTCACAGTTGCTCTTTATGCCCATTCTAGTCCCTGCTTTAAAAGAG 479 Query 969 GAGAGACTGCTCTCAATTGGTCTTTTCTTTGGTTGTGCCCATATGTTCCTACTATGTGTG 1028 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 480 GAGAGACTGCTCTCAATTGGTCTTTTCTTTGGTTGTGCCCATATGTTCTTGCTATGTGTG 539 Query 1029 GCATGGTCCTCATGGGTTCCATATATGGCAGCCATATTTGCACTTTTCTCAATATTTCCT 1088 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 540 GCATGGTCCTCATGGGTTCCATATATGGCAGCCATATTTGCATTTTTCTCAATATTTCCA 599 Query 1089 TCA-TCGTGTATGCGAAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGC 1147 || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 600 -CAATCGTGTATGCGAAGCATTGTCTCCAAACAAGTAGAATCATATGAACAGGGGAAAGC 658 Query 1148 CCAAGGAATTATTTCAAGCATATGTTCCCTTGCAAATGTCATTTCCCCGCTAGCATTTTC 1207 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 659 CCAAGGGATTATTTCAAGCATATGTTCCCTTGCAAATGTCATTTCCCCGCTTGCATTTTC 718 Query 1208 ACCTCTAACAGATTGGTTTCTGTCTGAAAGAGCCCCATTTAATTTCCCAGGGTTCAGTAT 1267 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 719 ACCTCTAACAGATTGGTTTCTGTCAGAAAGAGCCCCATTTAATTTCCCAGGATTCAGTAT 778 Query 1268 AATGTGTGCGGGATTTGCCATGACTATAGCTTTCATCCAAAGCCTGATGATCAGAGCAGC 1327 |||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| | Sbjct 779 AATGTGTGCGGGATTTACGATGACTATAGCTTTCATCCAAAGCCTCATGATCAGAGCAAC 838 Query 1328 AACACCAATATCAGTTATGGGATCTCCATAACACAGTTTCCTCAAAACCAT 1378 ||| |||||||||| |||||||||||||||| ||||| || |||||||| Sbjct 839 AACTCCAATATCAGATATGGGATCTCCATAATGCAGTTAGCTTAAAACCAT 889 > Ahg918714 jgi|Araly1|918714|Al_scaffold_0387_1 Length=717 Score = 898 bits (486), Expect = 0.0 Identities = 598/650 (92%), Gaps = 16/650 (2%) Strand=Plus/Plus Query 639 CTCGGTGCTCCCATTGTTATAAATGAGAAATTGAGTT-CTCCTTTACTTGAAGATTGTCC 697 ||||||||||| |||||||||| |||| |||||||| || ||||||||||||||||||| Sbjct 1 CTCGGTGCTCCTATTGTTATAAGCGAGACATTGAGTTCCT-CTTTACTTGAAGATTGTCC 59 Query 698 AGGACATAGAAATAGGATATTTAGAGCAATTCGTTTGGTACATGAAATGGCTTCTCTAAT 757 |||||||||||||| |||||||||||||||| || ||| | ||||||||| |||||| | Sbjct 60 TGGACATAGAAATAGAATATTTAGAGCAATTCATTCGGTGCGTGAAATGGCCTCTCTATT 119 Query 758 GAGAAGTAGCGTTCCACTTTTTCAAGTTGCGATGGTATCATTCTTCAGTAGTCTTGCTGA 817 ||||||| |||||| |||||||| |||||||||||| ||||| ||||||||||||||| Sbjct 120 GAGAAGT---GTTCCATTTTTTCAAATTGCGATGGTATTATTCTGCAGTAGTCTTGCTGA 176 Query 818 GGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAAAGA 877 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 GGCTGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAAAGA 236 Query 878 CCAGTTTGCAGACTTGATGATCATAGTT-GGCGCATCTGGATCTATTTCACAGTTGCTCT 936 ||||||||||||||||||||||||| | |||||| | |||||||||||||||||||| | Sbjct 237 CCAGTTTGCAGACTTGATGATCATA-TCAGGCGCAACGGGATCTATTTCACAGTTGCTTT 295 Query 937 TTATGCCCGTTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTTTCT 996 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TTATGCCCATTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTTTCT 355 Query 997 TTGGTTGTGCCCATATGTTCCT-ACTATGTGTGGCATGGTCCTCATGGGTTCCATATATG 1055 ||||| | |||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 356 TTGGTGGCGCCCATATGTTCTTGA-TATGTGTGGCATGGTCCTCATGGGTTCCATATATG 414 Query 1056 GCAGCCATATTTGCACTTTTCTCAATATTTCCTTCAT-CGTGTATGCGAAGCATTGTCTC 1114 |||||||||||| ||||||||||| ||||||| ||| | |||||||||||||||||||| Sbjct 415 GCAGCCATATTTTCACTTTTCTCAGTATTTCCA-CATTCATGTATGCGAAGCATTGTCTC 473 Query 1115 CAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGAATTATTTCAAGCATATG-TT 1173 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || Sbjct 474 CAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGGATTATTTCAAGCATA-GATT 532 Query 1174 CCCTTGCAAATGTCATTTCCCCGCTAGCATTTTCACCTCTAACAGATTGGTTTCTGTCTG 1233 ||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||| Sbjct 533 CCCTTGCAAATGTCATTTCCCCGCTTGCATTTTCACCTCTAACA--T-GGTTTCTATCTG 589 Query 1234 AAAGAGCCCCATTTAATTTCCCAGGGTTCAGTATAATGTGTGCGGGATTT 1283 |||| || ||||||||||||| |||||||||||||||||||||||| ||| Sbjct 590 AAAGGGCTCCATTTAATTTCCTAGGGTTCAGTATAATGTGTGCGGGGTTT 639 > Ahg949097 jgi|Araly1|949097|scaffold_800984.1 Length=486 Score = 641 bits (347), Expect = 0.0 Identities = 390/411 (95%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 39 TCTCTTAAAAATGGAGGAAACGACGACCTTCCATGGACTAGGACACCTCTTCATT-ACAA 97 |||||||| ||||||||||||||||||||| ||||||||||||||||||||| || |||| Sbjct 13 TCTCTTAACAATGGAGGAAACGACGACCTTTCATGGACTAGGACACCTCTTC-TTCACAA 71 Query 98 TCTTCTTGTACTGCTTCTCATCATTCATCGTGGCTCCGGTGATAACCGACATCAGCATGG 157 ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| Sbjct 72 TCTTCTTGTACTGCTTCTCATCATTCATCGTGGCTCCTGCGATAACCGATATCAGCATGG 131 Query 158 CTGCGCTATGTCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAAC 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 CTGCGCTATGTCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAAC 191 Query 218 AAGTTATCACGGGAGTGGGATCATTGATTATGATGCCATTGGTGGGAAGCTTGTCAGACA 277 |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||| Sbjct 192 AAGTTATCACGGGAGTGGGATCGTTGATGATGATGCCATTGATGGGAAGCTTGTCGGACA 251 Query 278 AGCATGGGAGAAAATGTTTGCTTACTCTTCCAATGACACTCAACATTTTACCTCTTGTGA 337 ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| || Sbjct 252 AGCATGGTAGAAAATGTTTGCTTACTCTTCCAATGACACTCCACATTTTGCCTCTTGCGA 311 Query 338 CATTAGCGTATAGTAGAGGGGCAACCATCTTCTACATGTACTATGTACTCAAGACTCTCA 397 |||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||| Sbjct 312 CATTAGCGTATAGTAGAGGGACGACCATCTTCTACATTTACTATGTACTCAAGACTTTCA 371 Query 398 CTTCGATAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCGTACGTGG 448 ||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 372 CTTCGATAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCTTATGTGG 422 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62886994495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5