BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42223.1
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949088 jgi|Araly1|949088|scaffold_800975.1 370 3e-102
Ahg331180 jgi|Araly1|331180|fgenesh1_pm.C_scaffold_8000523 204 3e-52
> Ahg949088 jgi|Araly1|949088|scaffold_800975.1
Length=301
Score = 370 bits (200), Expect = 3e-102
Identities = 232/248 (94%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 1 ATGGCTATCACCAAGAAATGTTTTGCCGCATTTGTACTCATCCTCCTCTTTGTCATGCCT 60
|||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct 21 ATGGCTATCACCAAGAAATGTTTTGCTGCATTTGTTCTCACCCTCCTCTTTGTCATGCCT 80
Query 61 TTCGTTTATTGCTCGGAATTAGATAACACTTCTGGTTTTGAAATAAAGCAAGAAGATAAA 120
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 81 TTCGTTTATTGCTCGGAATCCGATAACACTTATGGTTTTGAAATAAAGCAAGAAGATAAA 140
Query 121 TGCTACGGCCCAGAACCGTGTAAAAATGGTTACGAAGGATGCTTGTTCTTTTGTGTAAGA 180
|||||| |||||||||||||||||||||| ||||||||||||||| ||||||| | ||
Sbjct 141 TGCTACAGCCCAGAACCGTGTAAAAATGGGCCCGAAGGATGCTTGTTTTTTTGTGCACGA 200
Query 181 ATAGCCTATTACTTATATGGGGAATGTACTATGAAGCCTGATCATCAAAAGCATTGTTGT 240
||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 201 ATAGCCTATGACTTATATGGTGAATGTATTATGAAGCCTGATCATCAAAAGCATTGTTGT 260
Query 241 TGTGTGAC 248
||||||||
Sbjct 261 TGTGTGAC 268
> Ahg331180 jgi|Araly1|331180|fgenesh1_pm.C_scaffold_8000523
Length=222
Score = 204 bits (110), Expect = 3e-52
Identities = 130/140 (93%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 109 CAAGAAGATAAATGCTACGGCCCAGAACCGTGTAAAAATGGTTACGAAGGATGCTTGTTC 168
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 64 CAAGAAGATAAATGCTACAGCCCAGAACCGTGTAAAAATGGGCCCGAAGGATGCTTGTTT 123
Query 169 TTTTGTGTAAGAATAGCCTATTACTTATATGGGGAATGTACTATGAAGCCTGATCATCAA 228
||||||| | ||||||||||| |||||||||| ||||||| |||||||||||||||||||
Sbjct 124 TTTTGTGCACGAATAGCCTATGACTTATATGGTGAATGTATTATGAAGCCTGATCATCAA 183
Query 229 AAGCATTGTTGTTGTGTGAC 248
||||||||||||||||||||
Sbjct 184 AAGCATTGTTGTTGTGTGAC 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8859676552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5