BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42230.1
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494807 jgi|Araly1|494807|fgenesh2_kg.8__623__AT5G42230.1 1882 0.0
Ahg331179 jgi|Araly1|331179|fgenesh1_pm.C_scaffold_8000522 1773 0.0
Ahg494806 jgi|Araly1|494806|fgenesh2_kg.8__622__AT5G42240.1 1249 0.0
Ahg497456 jgi|Araly1|497456|fgenesh2_kg.482__1__AT5G42230.1 1133 0.0
Ahg906053 jgi|Araly1|906053|Al_scaffold_0003_3181 678 0.0
> Ahg494807 jgi|Araly1|494807|fgenesh2_kg.8__623__AT5G42230.1
Length=1458
Score = 1882 bits (1019), Expect = 0.0
Identities = 1288/1420 (91%), Gaps = 10/1420 (1%)
Strand=Plus/Plus
Query 168 TGGTGATGGTGACAGTGCAGGTGTTTGCACGAGGGTATCCGGAAACAGATTTGGTTGTGA 227
||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 44 TGGTGCTGGTGACTGTGCAGGTGTTTGCACAAGGGTATCCGGAAGCAGATTTGGTTGTGA 103
Query 228 GGCTTCCTGGTCAACCAAAGGTTGTATTCAGACAGTACGCAGGGTATGTTGATCTCGACT 287
||||||| ||||||| |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 104 GGCTTCCAGGTCAACTAAAGGTTGCGTTCAGACAGTACGCCGGGTACGTTGATCTCGACA 163
Query 288 TGAATGCTGGCCGTAGCCTTTTCTACTACTTCGTGGAAGCTGAAAAACACCCTGACACAA 347
|||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 164 TGAATGCTGGGCGTAGCCTTTTCTACTACTTCGTGGAGGCTGAAGAACACCCTGACACAA 223
Query 348 AACCGTTAACCTTGTGGCTCAATGGAGGTCCAGGTTGTTCTTC-TGTTGGTGGAGGAGCT 406
||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 224 AACCGCTAACCTTGTGGCTCAATGGAGGTCCAGGTTGTTCTTCAGGTT-GTGGAGGAGCT 282
Query 407 TTCACTGAGCTAGGTCCATTTTACCCCACAGGATATGGGC-GTGGTCTTCGCATTAACTC 465
|||||||||||||||||||||||||||||||| || ||| ||||||||||| |||||||
Sbjct 283 TTCACTGAGCTAGGTCCATTTTACCCCACAGGCGAT-GGCGGTGGTCTTCGCGTTAACTC 341
Query 466 CATGTCGTGGAACAAAGCCTCAAACCTGCTATTTGTGGACTCACCGGCTGGAGTTGGTTG 525
|||||||||||||||||| || |||||||| |||||||| ||||||| ||||||||| ||
Sbjct 342 CATGTCGTGGAACAAAGCATCGAACCTGCTGTTTGTGGAGTCACCGGTTGGAGTTGGATG 401
Query 526 GTCTTACTCCAACCGAAGCTCTGATTACAACGCTGGGGACAAGTCTGCGGCCAGCGATAT 585
||||||||||||||||||||||||||||||| | || ||||||||| | |||||||||||
Sbjct 402 GTCTTACTCCAACCGAAGCTCTGATTACAACACCGGTGACAAGTCTACTGCCAGCGATAT 461
Query 586 GCTCGTGTTCTTGTTGAGATGGTTCGATAAGTTCCCGGAGTTGAAGTCTCACGATC-TCT 644
|||||||||||||||| |||||||||| |||||||| ||||| ||||||| ||| | |||
Sbjct 462 GCTCGTGTTCTTGTTGGGATGGTTCGACAAGTTCCCAGAGTTCAAGTCTCGCGA-CTTCT 520
Query 645 TTCTCACTGGCGAAAGCTATGCAGGACATTACATACCTCAACTGGCTGATGCGATTCTCA 704
|||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 521 TTCTCACTGGTGAAAACTATGCAGGACATTACATACCGCAATTGGCTGATGCGATACTCA 580
Query 705 GCTATAACTCACGCTCAAGTGGGTTCAAATTCAACATCAAAGGCATTGCAATAGGGAATC 764
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 581 GCTACAATTCACGCTCAAGTGGGTTCAAATTCAACATCAAAGGCATTGCAATTGGGAATC 640
Query 765 CACTTCTGAAGCTTGACAGGGACATTCC-AGCTGTATACGAGTTCTTCTGGTCGCATGGC 823
|| |||||||||||||||| ||| ||| ||||| || |||||||||||||||||| ||
Sbjct 641 CATTTCTGAAGCTTGACAGAGAC-GTCCGAGCTGCATTCGAGTTCTTCTGGTCGCACGGG 699
Query 824 ATGATCTCTGAGGTAGTGGGACGTACAATCAAGATTCAATGTGACTTCTCACATTACACA 883
||||||||||| | |||||||| ||||||| || ||| |||||||||| ||||||||
Sbjct 700 ATGATCTCTGATGAAGTGGGACACACAATCATGAGTCAGTGTGACTTCTTGGATTACACA 759
Query 884 TATGCATACCCCCATAACGTAAGTGATGCCTGCAACGATGCTATCCGTGAAGCCGGAGAC 943
||| |||||| |||||| |||||| ||| |||||||| |||||||||||||||||| ||
Sbjct 760 TATATATACCCGCATAACCTAAGTGTTGCATGCAACGACGCTATCCGTGAAGCCGGAAAC 819
Query 944 ATCACCACTGAGTATGTCAATACCTTTGATGTTCTCCCT-GACCTATGCTACCCATCTAT 1002
| || |||||||||||||| | || |||| |||| ||| ||| | |||||||| || ||
Sbjct 820 AGCATTACTGAGTATGTCAACAACTATGATTTTCT-CCTGGACATTTGCTACCCCTCGAT 878
Query 1003 TGCCCTGCAAGAGCTAAGGCTTAAACAAATGGCTACTAAGATGAGCATGGGAGTGGATGT 1062
|| |||| |||| || |||||||| |||||||| || ||||||||||||||||| |||||
Sbjct 879 TGTCCTGAAAGAACTTAGGCTTAAGCAAATGGCCACAAAGATGAGCATGGGAGTTGATGT 938
Query 1063 GTGTATGAACTACGAAAGACAGTTCTACCTAAATATCCCAGAGGTACAGATGGCTCTTCA 1122
||||||| ||||||||||||||| || | ||| ||||||||||||||||||| |||||
Sbjct 939 CTGTATGACCTACGAAAGACAGTTATATTTTAATCTCCCAGAGGTACAGATGGCGCTTCA 998
Query 1123 CGCAAACCGCACAAACCTGCCTTATTCATGGTCTTTGTGCAGCAACCTGTTAAACTACTC 1182
|| |||||||| | ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 999 TGCGAACCGCACTCATCTGCCATATTCATGGTCAATGTGCAGCAACCTGTTAAACTACTC 1058
Query 1183 TGCCATCGATGTAAACACCAACATGCTTCCGACTCTGAAGAGAATTATACAGAACAAAAT 1242
|| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1059 TGGCATCGATGCAAACATCAACATGCTTCCGACTCTGAAGAGAGTTATACAGAACAAAAT 1118
Query 1243 TCCTGTTAGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCATTTCTGGGAACACGAAC 1302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCATTTCTGGGAACACGAAC 1178
Query 1303 TATCGTAGGAGAACTCGCCAACGATCTCAATTTCAAGACGACAGTTCCATATGGAGTGTG 1362
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TGTCGTAAGAGAACTCGCCAACGATCTCAATTTCAAGACGACAGTTCCATATGGAGTGTG 1238
Query 1363 GTTCCACAAAAGACAGGTTGGAGGCTGGGCCATCGAGTATGGAAACCTACTAACTTTTGC 1422
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 1239 GTTCCACAAAAGACAGGTTGGAGGTTGGGCCATCGAGTATGGAAACATACTCACTTTTGC 1298
Query 1423 AACAGTGAGAGGAGCGGCTCATGCGGTGGCGTACACGCAGCCCTCACGAGCTCTGCATCT 1482
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1299 AACAGTGAGAGGAGCGGCTCATGCGGTGGCGAACACGCAGCCCTCACAAGCTCTGCATCT 1358
Query 1483 ATTCAGCACCTTTCTTCGTGGGCAGAGATTGCCCAACAAGACAGATATTGCTATGCATGA 1542
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1359 ATTCAGCACCTTTCTTCGTGGCCATAGATTGCCCAACAAGACAGATATAGCTATGCATGA 1418
Query 1543 CTGAAAGAGAAGGAATCTCATTATTAGAGTACATATCCTT 1582
|||||||||||||| |||||||||||||| ||||||||
Sbjct 1419 TTGAAAGAGAAGGAAGCTCATTATTAGAGTTTATATCCTT 1458
> Ahg331179 jgi|Araly1|331179|fgenesh1_pm.C_scaffold_8000522
Length=1419
Score = 1773 bits (960), Expect = 0.0
Identities = 1227/1359 (90%), Gaps = 6/1359 (0%)
Strand=Plus/Plus
Query 191 TTTGCACGA-GGGTATCCGGAAACAGATTTGGTTGTGAGGCTTCCTGGTCAACCAAAGGT 249
|||||| || ||||| || ||| ||||||| ||||||| ||| || || ||||||| |||
Sbjct 64 TTTGCA-GATGGGTACCCAGAAGCAGATTTTGTTGTGAAGCTGCCAGGGCAACCAACGGT 122
Query 250 TGTATTCAGACAGTACGCAGGGTATGTTGATCTCGACTTGAATGCTGGCCGTAGCCTTTT 309
|||||||||||||| |||||||||||| ||||| | || ||| || || |||||
Sbjct 123 AACGTTCAGACAGTACGCCGGGTATGTTGATATCGACAAGGTTGTTGGGCGGAGTCTTTT 182
Query 310 CTACTACTTCGTGGAAGCTGAAAAACACCCTGACACAAAACCGTTAACCTTGTGGCTCAA 369
|||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 183 TTACTACTTCGTGGAGGCTGAAAAACGTCCTGACACAAAACCGTTAACATTGTGGCTCAA 242
Query 370 TGGAGGTCCAGGTTGTTCTTCTGTTGGTGGAGGAGCTTTCACTGAGCTAGGTCCATTTTA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGGAGGTCCAGGTTGTTCTTCTGTTGGTGGAGGAGCTTTCACTGAGCTAGGTCCATTTTA 302
Query 430 CCCCACAGGATATGGGCGTGGTCTTCGCATTAACTCCATGTCGTGGAACAAAGCCTCAAA 489
||||||||| |||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct 303 CCCCACAGGCGATGGCCGTGGCCTCCGCATTAACTCCATGTCGTGGAACAAAGCATCGAA 362
Query 490 CCTGCTATTTGTGGACTCACCGGCTGGAGTTGGTTGGTCTTACTCCAACCGAAGCTCTGA 549
||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 363 CCTGCTATTTGTGGACTCACCGGCTGGAGTTGGATGGTCATACTCCAACCAAAGCTCTGA 422
Query 550 TTACAACGCTGGGGACAAGTCTGCGGCCAGCGATATGCTCGTGTTCTTGTTGAGATGGTT 609
||||||| | |||||| ||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 423 TTACAACACCGGGGACGAGTCTGCTGCCAGTGATATGCTTGTGTTCTTGTTGAGATGGTT 482
Query 610 CGATAAGTTCCCGGAGTTGAAGTCTCACGATCTCTTTCTCACTGGCGAAAGCTATGCAGG 669
||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||| ||
Sbjct 483 CGATAAGTTCCCGGAATTGAAGTCTCGCGACCTCTTTCTCACAGGCGAAAGCTATGCTGG 542
Query 670 ACATTACATACCTCAACTGGCTGATGCGATTCTCAGCTATAACTCACGCTCAAGTGGGTT 729
||||||||||||||||||||||||||||||||||||||| || |||| ||| || |||||
Sbjct 543 ACATTACATACCTCAACTGGCTGATGCGATTCTCAGCTACAATTCACACTCGAGCGGGTT 602
Query 730 CAAATTCAACATCAAAGGCATTGCAATAGGGAATCCACTTCTGAAGCTTGACAGGGACAT 789
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 603 CAAATTCAACATCAAAGGCATTGCGATTGGGAATCCACTTCTTAAGCTTGACAGGGACAT 662
Query 790 TCCAGCTGTATACGAGTTCTTCTGGTCGCATGGCATGATCTCTGAGGTAGTGGGACGTAC 849
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 663 TCCAGCTGTATACGAGTTCTTCTGGTCGCATGGCATGATCTCTGATATAGTGGGACGCAC 722
Query 850 AATCAAGATTCAATGTGACTTCTCACATTACACATATGCATACCCCCATAACGTAAGTGA 909
||||| || |||||||||||||||||||||||| ||||| ||||| ||||||| ||||||
Sbjct 723 AATCAGGAGTCAATGTGACTTCTCACATTACACGTATGCGTACCCACATAACGCAAGTGA 782
Query 910 TGCCTGCAACGATGCTATC-CGTGAAGCCGGAGA-CATCACCACTGAGTATGTCAATACC 967
||| |||||||| |||| | | |||||| ||| | | ||| |||||| |||||||| | |
Sbjct 783 TGCTTGCAACGACGCTACCAC-TGAAGCGGGA-ATCGTCATCACTGAATATGTCAACAAC 840
Query 968 TTTGATGTTCTCCCTGACCTATGCTACCCATCTATTGCCCTGCAAGAGCTAAGGCTTAAA 1027
||||||||||||| |||| | |||||||| || |||| ||| ||||| |||||||| ||
Sbjct 841 TTTGATGTTCTCCTTGACATTTGCTACCCGTCAATTGTCCTACAAGAACTAAGGCTCAAG 900
Query 1028 CAAATGGCTACTAAGATGAGCATGGGAGTGGATGTGTGTATGAACTACGAAAGACAGTTC 1087
|||||||| || ||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 901 CAAATGGCCACAAAGATGAGCATGGGAGTGGATGTCTGTTTGACCTACGAAAGACAGTTC 960
Query 1088 TACCTAAATATCCCAGAGGTACAGATGGCTCTTCACGCAAACCGCACAAACCTGCCTTAT 1147
||| | ||| ||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 961 TACTTTAATCTCCCAGAGGTACAGATGGCGCTTCACGCAAACCGCACTCATCTGCCTTAT 1020
Query 1148 TCATGGTCTTTGTGCAGCAACCTGTTAAACTACTCTGCCATCGATGTAAACACCAACATG 1207
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1021 GAATGGTCTTTGTGCAGCAACCTGTTAAACTACTCTGGCATCGATGTAAACACCAACATG 1080
Query 1208 CTTCCGACTCTGAAGAGAATTATACAGAACAAAATTCCTGTTAGGATCTTCAGTGGAGAT 1267
|||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1081 CTTCCGCCTCTGAAGAGAATTATACAGAACAAAATTCCGGTTTGGATCTTCAGTGGAGAT 1140
Query 1268 CAAGATTCTGTAGTTCCATTTCTGGGAACACGAACTATCGTAGGAGAACTCGCCAACGAT 1327
|||||||| |||||||||||||| |||||| ||||| ||||| |||||||||| |||||
Sbjct 1141 CAAGATTCGGTAGTTCCATTTCTTGGAACAAGAACTGTCGTACAAGAACTCGCCGACGAT 1200
Query 1328 CTCAATTTCAAGACGACAGTTCCATATGGAGTGTGGTTCCACAAAAGACAGGTTGGAGGC 1387
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1201 CTCAATTTCAAGACGACAGTTCCATATGGAGTGTGGTTCCATAAAAGACAGGTTGGAGGC 1260
Query 1388 TGGGCCATCGAGTATGGAAACCTACTAACTTTTGCAACAGTGAGAGGAGCGGCTCATGCG 1447
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1261 TGGGCCATCGAGTATGGAAACCTACTCACGTTTGCAACAGTGAGAGGAGCGGCTCATGCG 1320
Query 1448 GTGGCGTACACGCAGCCCTCACGAGCTCTGCATCTATTCAGCACCTTTCTTCGTGGGCAG 1507
|||||||||| ||||||||| |||||||||||||| |||||||||||| | ||||| |||
Sbjct 1321 GTGGCGTACAAGCAGCCCTCTCGAGCTCTGCATCTGTTCAGCACCTTTGTGCGTGGACAG 1380
Query 1508 AGATTGCCCAACAAGACAGATATTGCTATGCATGACTGA 1546
|||||||| |||||||| ||||| | | | ||||| |||
Sbjct 1381 AGATTGCCTAACAAGACCGATATAGGTTTTCATGATTGA 1419
> Ahg494806 jgi|Araly1|494806|fgenesh2_kg.8__622__AT5G42240.1
Length=1686
Score = 1249 bits (676), Expect = 0.0
Identities = 1163/1398 (83%), Gaps = 34/1398 (2%)
Strand=Plus/Plus
Query 168 TGGTGATGGTGACAGTGCAGGT-GTTTGCACGA-GGGTATCCGGAA-ACAGATTTGGTTG 224
||||| || || || |||| || ||||||| || ||||| || ||| | ||||||||| |
Sbjct 57 TGGTGTTGCTGTCAATGCA-GTGGTTTGCA-GATGGGTACCCAGAAGA-AGATTTGGTGG 113
Query 225 TGAGGCTTCCTGGTCAACCAAAGGTTGTATTCAGACAGTACGCAGGGTATGTTGATCTCG 284
||||||| || |||||||||| |||| |||||||| ||| |||| ||||| ||| |||
Sbjct 114 TGAGGCTGCCAGGTCAACCAACTGTTGGGTTCAGACAATACTCAGGTTATGTCGATGTCG 173
Query 285 ACT-TGAATGCTGGCCGTAGCCTTTTCTACTACTTCGTGGAAGCTGAAAAACACCCTGAC 343
| | |||| ||||| || || || ||||| |||| |||||| |||| ||||| || |||
Sbjct 174 A-TGTGAAAGCTGGTCGGAGTCTGTTCTATTACTACGTGGAGGCTGTGAAACAACCAGAC 232
Query 344 ACAAAACCGTT-AACCTTGTGGCTCAATGGAGGTCCAGGTTGTTCTTCTGTTGGTGGAGG 402
|||||||| || | |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 233 ACAAAACCATTGACCCTT-TGGCTCAATGGAGGTCCAGGTTGTTCTTCAATTGGTGGAGG 291
Query 403 AGCTTTCACTGAGCTAGGTCCATTTTACCCCACAGGATATGGGCGTGGTCTTCGCATTAA 462
||||||||||||| | ||||||||||||||||| || |||| ||||| |||||| ||||
Sbjct 292 AGCTTTCACTGAGTTGGGTCCATTTTACCCCACTGGCGATGGCCGTGGCCTTCGCGTTAA 351
Query 463 CTCCATGTCGTGGAACAAAGCCTCAAACCTGCTATTTGTGGACTCACCGGCTGGAGTTGG 522
|||| |||| |||||||||||||| ||| |||| |||||||| |||||||||||||| ||
Sbjct 352 CTCCTTGTCTTGGAACAAAGCCTCGAACTTGCTTTTTGTGGAGTCACCGGCTGGAGTAGG 411
Query 523 TTGGTCTTACTCCAACCGAAGCTCTGATTACAACGCTGGGGACAAGTCTGCGGCCAGCGA 582
||||||||||||||||||||| ||||||||||| | |||||||| || | || || ||
Sbjct 412 ATGGTCTTACTCCAACCGAAGCACTGATTACAACACCGGGGACAAAACTACTGCTAGAGA 471
Query 583 TATGCTCGTGTTCTTGTTGAGATGGTTCGATAAGTTCCCGGAGTTGAAGTCTCACGATCT 642
||||||||||||||||||||||||||| || |||||||| |||||||||||| || ||
Sbjct 472 TATGCTCGTGTTCTTGTTGAGATGGTTTGACAAGTTCCCAAAGTTGAAGTCTCGGGACCT 531
Query 643 CTTTCTCACTGGCGAAAGCTATGCAGGACATTACATACCTCAACTGGCTGATGCGATTCT 702
|||||| ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 532 CTTTCTTACTGGCGAAAGCTATGCTGGACATTACATACCGCAATTGGCTGATGCGATTCT 591
Query 703 CAGCTATAACT-CACGCTCAAGTGGGTTCAAATTCAACATCAAAGGCATTGCAATAGGGA 761
|||||| || | ||| ||| ||||| |||||||||||||| |||||| ||||||| ||||
Sbjct 592 CAGCTACAA-TGCACACTCCAGTGGATTCAAATTCAACATTAAAGGCGTTGCAATCGGGA 650
Query 762 ATCCACTTCTGAAGCTTGACAGGGACATTCCAGCTGTATACGAGTTCTTCTGGTCGCATG 821
||||||| ||||| |||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct 651 ATCCACTACTGAAACTTGACAGAGACAGTCCAGCTACGTACGAGTTCTTCTGGTCGCATG 710
Query 822 GCATGATCTCTGAGGTAGTGGGACGT-ACAATCAAGATTCAATGTGACTTCTCA-CATTA 879
| ||||| ||||| | | | || | ||||||| || ||||||||||| | | ||||
Sbjct 711 GGATGATTTCTGATGAACTCAAAC-TCACAATCACGAGCCAATGTGACTT-TGATGATTA 768
Query 880 CACATATG-CATACCCCCATAACGTAAGTGA-TGCCTGCAACGATGCTATCCGTGAAGCC 937
||||| || || ||||||||||||||| | |||||||| |||||||| ||||| ||
Sbjct 769 CACATTTGCCA-GCCCCCATAACGTAAG-CACGGCCTGCAATGATGCTATTAGTGAAACC 826
Query 938 GGAGACATCACCACTGAGTATGTCAATACCTTTGATGTTCTCCCT-GACCTATGCTACCC 996
||| |||||| || |||||||||||| | || ||||||||| ||| ||| |||| || ||
Sbjct 827 GGAAACATCATCAGTGAGTATGTCAACAACTATGATGTTCT-CCTCGACGTATGTTATCC 885
Query 997 ATCTATTGCCCTGCAAGAGCTAAGGCTTAA-ACAAATGGCTACTAAGA-TGAGCATGGGA 1054
||||| | || ||||||||| ||||| || | ||||||||||||| | ||||| |||||
Sbjct 886 GTCTATCGTCCAGCAAGAGCTGAGGCTCAAGA-AAATGGCTACTAA-ACTGAGCTTGGGA 943
Query 1055 GTGGATGTGTGTATGAACTACGAAAGACAGTTCTACCTAAATATCCCAGAGGTACAGATG 1114
|||||||||||||||| ||| ||||||| ||||||| | || | ||||||||||| | |
Sbjct 944 GTGGATGTGTGTATGACCTATGAAAGACGGTTCTACTTTAACCTTCCAGAGGTACAAAAG 1003
Query 1115 GCTCTTCACGCAAACCGCACAAACCTGCCTTATTCATGGTCTTTGTGCAGCAACCTGTTA 1174
|| ||||| || ||||| || | ||||||||| |||||| |||||||| | |||
Sbjct 1004 GCGCTTCATGCGAACCGTACTCATCTGCCTTATGAATGGTCAATGTGCAGCGGTCAGTTG 1063
Query 1175 AACTACTCTGCCATCGATGTAAACACCAACATGCTTCCGACTCTGAAGAGAATTATACAG 1234
|||||||||| || ||||| || | | |||||||||||| |||||||||||||||||||
Sbjct 1064 AACTACTCTGACACCGATGCGAATATCGACATGCTTCCGATTCTGAAGAGAATTATACAG 1123
Query 1235 AACAAAATTCCTGTTAGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCATTTC-TGGG 1293
||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1124 AACAAAACTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCATT-CGTCGG 1182
Query 1294 AACACGAACTATCGTAGGAGAACTCGC-CAACGATCTCAATTTCAAGACGACAGTTCCAT 1352
|| ||||| ||||| ||||||| || || ||||||||| ||| |||| |||||||| |
Sbjct 1183 TTCAAGAACTCTCGTAAGAGAACTTGCTCA-CGATCTCAACTTCGAGACCACAGTTCCCT 1241
Query 1353 ATGGAGTGTGGTTCCACAAAAGACAGGTTGGAGGCTGGGCCATCGAGTATGGAAACCTAC 1412
| |||| |||||||||||||| |||||||||||||||||||| || || ||||| ||||
Sbjct 1242 ACGGAGCCTGGTTCCACAAAAGTCAGGTTGGAGGCTGGGCCATTGAATACGGAAAACTAC 1301
Query 1413 TAACTTTTGCAACAGTGAGAGGAGCGGCTCATGCGGTGGCGTACACGCAGCCCTCACGAG 1472
| || |||||||| |||||||||||||||||| ||| | || | |||||||||||||
Sbjct 1302 TGACGTTTGCAACGGTGAGAGGAGCGGCTCATATGGTACCATATGCACAGCCCTCACGAG 1361
Query 1473 CTCTGCATCTATTCAGCACCTTTCTTCGTGGGCAGAGATTGCCCAACAAGACAGATA-TT 1531
|||| ||| | ||||| | |||| | |||| | ||||||||||||||| ||| || ||
Sbjct 1362 CTCTACATTTGTTCAGTAGCTTTGTGAGTGGCCGGAGATTGCCCAACAACACACATTCTT 1421
Query 1532 GCTA-TGCATGACTGAAA 1548
||| || |||| |||||
Sbjct 1422 -CTACTG-ATGATTGAAA 1437
> Ahg497456 jgi|Araly1|497456|fgenesh2_kg.482__1__AT5G42230.1
Length=1390
Score = 1133 bits (613), Expect = 0.0
Identities = 790/877 (90%), Gaps = 5/877 (1%)
Strand=Plus/Plus
Query 703 CAGCTATAACTCACGCTCAAGTGGGTTCAAATTCAACATCAAAGGCATTGCAATAGGGAA 762
|||||| || ||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 517 CAGCTACAATTCACGCTCAAGGGGGTTC-AATTCAACATCAAAGGCATTGCAATTGGGAA 575
Query 763 TCCACTTCTGAAGCTTGACAGGGACATTCC-AGCTGTATACGAGTTCTTCTGGTCGCATG 821
|||| |||||||||||||||| ||| ||| ||||| || |||||||||||||||||| |
Sbjct 576 TCCATTTCTGAAGCTTGACAGAGAC-GTCCGAGCTGCATTCGAGTTCTTCTGGTCGCACG 634
Query 822 GCATGATCTCTGAGGTAGTGGGACGTACAATCAAGATTCAATGTGACTTCTCACATTACA 881
| ||||||||||| | |||||||| ||||||| || ||| |||||||||| ||||||
Sbjct 635 GGATGATCTCTGATGAAGTGGGACACACAATCATGAGTCAGTGTGACTTCTTGGATTACA 694
Query 882 CATATGCATACCCCCATAACGTAAGTGATGCCTGCAACGATGCTATCCGTGAAGCCGGAG 941
||||| |||||| |||||| |||||| ||| |||||||| ||||||||||||||||||
Sbjct 695 CATATATATACCCGCATAACCTAAGTGTTGCATGCAACGACGCTATCCGTGAAGCCGGAA 754
Query 942 ACATCACCACTGAGTATGTCAATACCTTTGATGTTCTCCCT-GACCTATGCTACCCATCT 1000
||| || |||||||||||||| | || |||| |||| ||| ||| | |||||||| ||
Sbjct 755 ACAGCATTACTGAGTATGTCAACAACTATGATTTTCT-CCTGGACATTTGCTACCCCTCG 813
Query 1001 ATTGCCCTGCAAGAGCTAAGGCTTAAACAAATGGCTACTAAGATGAGCATGGGAGTGGAT 1060
|||| |||| |||| || |||||||| |||||||| || ||||||||||||||||| |||
Sbjct 814 ATTGTCCTGAAAGAACTTAGGCTTAAGCAAATGGCCACAAAGATGAGCATGGGAGTTGAT 873
Query 1061 GTGTGTATGAACTACGAAAGACAGTTCTACCTAAATATCCCAGAGGTACAGATGGCTCTT 1120
|| ||||||| ||||||||||||||| || | ||| ||||||||||||||||||| |||
Sbjct 874 GTCTGTATGACCTACGAAAGACAGTTATATTTTAATCTCCCAGAGGTACAGATGGCGCTT 933
Query 1121 CACGCAAACCGCACAAACCTGCCTTATTCATGGTCTTTGTGCAGCAACCTGTTAAACTAC 1180
|| || |||||||| | ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 934 CATGCGAACCGCACTCATCTGCCATATTCATGGTCAATGTGCAGCAACCTGTTAAACTAC 993
Query 1181 TCTGCCATCGATGTAAACACCAACATGCTTCCGACTCTGAAGAGAATTATACAGAACAAA 1240
|||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 994 TCTGGCATCGATGCAAACATCAACATGCTTCCGACTCTGAAGAGAGTTATACAGAACAAA 1053
Query 1241 ATTCCTGTTAGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCATTTCTGGGAACACGA 1300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ATTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCATTTCTGGGAACACGA 1113
Query 1301 ACTATCGTAGGAGAACTCGCCAACGATCTCAATTTCAAGACGACAGTTCCATATGGAGTG 1360
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 ACTGTCGTAAGAGAACTCGCCAACGATCTCAATTTCAAGACGACAGTTCCATATGGAGTG 1173
Query 1361 TGGTTCCACAAAAGACAGGTTGGAGGCTGGGCCATCGAGTATGGAAACCTACTAACTTTT 1420
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 1174 TGGTTCCACAAAAGACAGGTTGGAGGCTGGGCCATCGATTATGGAAACATACTCACTTTT 1233
Query 1421 GCAACAGTGAGAGGAGCGGCTCATGCGGTGGCGTACACGCAGCCCTCACGAGCTCTGCAT 1480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1234 GCAACAGTGAGAGGAGCGGCTCATGCGGTGGCGAACACGCAGCCCTCACGAGCTCTGCAT 1293
Query 1481 CTATTCAGCACCTTTCTTCGTGGGCAGAGATTGCCCAACAAGACAGATATTGCTATGCAT 1540
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1294 CTATTCAGCACCTTTCTTCGTGGCCATAGATTGCCCAACAAGACAGATATAGCTATGCAT 1353
Query 1541 GACTGAAAGAGAAGGAATCTCATTATTAGAGTACATA 1577
|| ||||||| |||||| ||||||||||||||| |||
Sbjct 1354 GATTGAAAGAAAAGGAAGCTCATTATTAGAGTATATA 1390
Score = 531 bits (287), Expect = 8e-150
Identities = 437/504 (87%), Gaps = 31/504 (6%)
Strand=Plus/Plus
Query 168 TGGTGATGGTGACAGTGCAGGTGTTTGCACGAGGGTATCCGGAAACAGATTTGGTTGTGA 227
||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 44 TGGTGCTGGTGACTGTGCAGGTGTTTGCACAAGGGTATCCGGAAGCAGATTTGGTTGTGA 103
Query 228 GGCTTCCTGGTCAACCAAAGGTTGTATTCAGACAGTACGCAGGGTATGTTGATCTCGACT 287
||||||| ||||||| |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 104 GGCTTCCAGGTCAACTAAAGGTTGCGTTCAGACAGTACGCCGGGTACGTTGATCTCGACA 163
Query 288 TGAATGCTGGCCGTAGCCTTTTCTACTACTTCGTGGAAGCTGAAAAACACCCTGACACAA 347
|||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 164 TGAATGCTGGGCGTAGCCTTTTCTACTACTTCGTGGAGGCTGAAGAACACCCTGACACAA 223
Query 348 AACCGTTAACCTTGTGGCTCAATGGAGGTCCAGGTTGTTCTTC-TGTTGGTGGAGGAGCT 406
||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 224 AACCGCTAACCTTGTGGCTCAATGGAGGTCCAGGTTGTTCTTCAGGTT-GTGGAGGAGCT 282
Query 407 TTCACTGAGCTAGGTCCATTTTACCCCACAGGATATGGGCG-TGGTCTTCGCATTAACTC 465
|||||||||||||||||||||||||||||||| |||| || |||||||||| |
Sbjct 283 TTCACTGAGCTAGGTCCATTTTACCCCACAGGCGATGG-CGGTGGTCTTCGC-----C-- 334
Query 466 CATGTCGTGGAACAAAGCCTCAAACCTGCTATTTGTGGACTCACCGGCTGGAGTTGGTTG 525
|| || ||| | | | || | || ||||| | ||||| ||||||||| ||
Sbjct 335 -AT--CG---AAC----C-TG---C-TG-T-TT-GTGGAGTGACCGGTTGGAGTTGGATG 376
Query 526 GTCTTACTCCAACCGAAGCTCTGATTACAACGCTGGGGACAAGTCTGCGGCCAGCGATAT 585
||||||||||||| ||||||||||||||||| | || ||||||||| | |||||||||||
Sbjct 377 GTCTTACTCCAACTGAAGCTCTGATTACAACACCGGTGACAAGTCTACTGCCAGCGATAT 436
Query 586 GCTCGTGTTCTTGTTGAGATGGTTCGATAAGTTCCCGGAGTTGAAGTCTCACGATCT-CT 644
|||||||||||||||| |||||||||| |||||||| ||||| ||||||| ||| || ||
Sbjct 437 GCTCGTGTTCTTGTTGGGATGGTTCGACAAGTTCCCAGAGTTCAAGTCTCGCGA-CTTCT 495
Query 645 TTCTCACTGGCGAAAGCTATGCAG 668
|||||||||| |||| ||||||||
Sbjct 496 TTCTCACTGGTGAAAACTATGCAG 519
> Ahg906053 jgi|Araly1|906053|Al_scaffold_0003_3181
Length=1356
Score = 678 bits (367), Expect = 0.0
Identities = 694/847 (82%), Gaps = 42/847 (5%)
Strand=Plus/Plus
Query 199 AGGGTATCCGGAA-ACAGATTTGGTTGTGAGGCTTCCTGGTCAACCAAAGGTTGTATTCA 257
||| ||||||||| | |||| |||| |||||||| ||||||||||| ||||| | ||||
Sbjct 99 AGGTTATCCGGAAGA-AGATATGGTGGTGAGGCTGCCTGGTCAACCGAAGGTCGGGTTCA 157
Query 258 GACAGTACGCAGGGTATGTTGATCTCGACTTGAATG-CTGGCCGTAGCCTTTTCTACTAC 316
|||| | ||| || ||||| ||| | |||| | | | ||| ||||| ||||| ||||||
Sbjct 158 GACAATTCGCTGGATATGTCGATGTGGACTCGGA-GAATGGTCGTAGTCTTTTTTACTAC 216
Query 317 T-TCGTGGAAGCTGAAAAACACCCTGACACAAAACCGTTAA-CCTTGTGGCTCAATGGAG 374
| | || || |||| |||| | |||||||| || || |||| |||| |||||||||||||
Sbjct 217 TAT-GTTGAGGCTGTAAAAGAACCTGACACTAAGCCCTTAACCCTT-TGGCTCAATGGAG 274
Query 375 GTCCAGGTTGTTCTTCTGTTGGTGGAGGAGCTTTCACTGAGCTAGGTCCATTTTACCCCA 434
|||||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 275 GTCCAGGTTGTTCTTCAGTTGGTGGAGGAGATTTCACTAAGTTAGGTCCATTTTACCCCA 334
Query 435 CAGGAT-ATGGGCGTGGTCTTCGCATT-AACTCCATGTCGTGGAACAAAGCCTCAAACCT 492
| || | |||| ||||| || ||| || ||||||||||| |||||||||||||| |||||
Sbjct 335 CGGG-TGATGGCCGTGGCCTCCGC-TTGAACTCCATGTCTTGGAACAAAGCCTCGAACCT 392
Query 493 GCTATTTGTGGACTCACCGGCTGGAGTTGGTTGGTCTTACTCCAACCGAAGCTCTGATTA 552
|||||||||||| ||||| || | ||| || ||||| ||||| ||| |||||||| ||||
Sbjct 393 GCTATTTGTGGAGTCACCAGCCGTAGTAGGATGGTCATACTCTAACAGAAGCTCTAATTA 452
Query 553 CAACGCTGGGGACAAGTCTGCGGCCAGCGATATGCTCGTGTTCTTGTTGAGATGGTTCGA 612
||| | |||||||||||| | |||| |||||||| |||||||| |||||||||||| |
Sbjct 453 TAACACCGGGGACAAGTCTACTGCCAATGATATGCTTGTGTTCTTATTGAGATGGTTCAA 512
Query 613 TAAGTTCCCGGAGTTGAAGTCTCACGATCTCTTTCTCACTGGCGAAAGCTATGCAGGACA 672
||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||| ||
Sbjct 513 CAAGTTCCAAGAGTTGAAGTCTCGCGACCTCTTTCTCACTGGCGAAAGCTACGCAGGGCA 572
Query 673 TTACATACCTCAACTGGCTGATGCGATTCTCAGCTATAACTCACGCTCAAGTGGGTTCAA 732
|||||||||||||||||||||| ||| |||||||| || |||||||||| |||||||||
Sbjct 573 CTACATACCTCAACTGGCTGATGTGATACTCAGCTACAATTCACGCTCAAATGGGTTCAA 632
Query 733 ATTCAACATCAAAGGCATTGCAATAGGGAATCCACTTCTGAAGCTTGACAGGGACATTCC 792
||| ||| |||||||||||||||| || |||||||||||||||||||||||||| || |
Sbjct 633 ATTTAACGTCAAAGGCATTGCAATTGGCAATCCACTTCTGAAGCTTGACAGGGATGTTGC 692
Query 793 AGCTGTATACGAGTTCTTCTGGTCGCATGGCATGATCTCTGAGGTAGTGGGACGT-ACAA 851
||||| |||||||| ||||||||||||||| ||||||||||| | ||| ||| | ||||
Sbjct 693 AGCTGCATACGAGTACTTCTGGTCGCATGGGATGATCTCTGATGAAGTAAGAC-TCACAA 751
Query 852 TCAAGATTCAATGTGACTTCT-CACATTACACATATGCATACCCCCATAACGTAAGTGAT 910
||| || ||||||||||| | | || | || | | | | || || | |||| || |
Sbjct 752 TCATGAACCAATGTGACTT-TGC-CAATCCA-A-A-G-A-AC----ATGA-GTAA-TGCT 798
Query 911 GCCTGCA-ACGATGCTATCCGT-GAAGCCGGAGACATCAC-CACTGAGTATGTCAATACC 967
|| | || |||||||| || || | || | || | |||||||||| |||||| |
Sbjct 799 ---TGTATAC-ATGCTATC-GTTGACTCA--AG-CGTC-CTCACTGAGTATATCAATAGC 849
Query 968 TTTGATGTTCTCCCTGACCTATGCTACCCATCTATTGCCCTGCAAGAGCTAAGGCTTAA- 1026
| | ||||||||| ||| |||| ||||| ||||||| || ||||||||| ||||| ||
Sbjct 850 TATCATGTTCTCCTTGATGTATGTTACCCTTCTATTGTCCAGCAAGAGCTGAGGCTCAAG 909
Query 1027 ACAAATG 1033
| |||||
Sbjct 910 A-AAATG 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63496438415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5