BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G42232.1

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg908058 jgi|Araly1|908058|Al_scaffold_0002_1139                    307    2e-83


> Ahg908058 jgi|Araly1|908058|Al_scaffold_0002_1139
Length=252

 Score =  307 bits (166),  Expect = 2e-83
 Identities = 216/240 (90%), Gaps = 3/240 (1%)
 Strand=Plus/Plus

Query  2    TGGCTATCACCAAGAAA-ATGCTTGTCGTATTTCTTCTTGCTTTTCTTTTTGTGACATCG  60
            ||| ||||||||| ||| |||||| |||||||||||||  || |||||||||| | ||| 
Sbjct  1    TGGATATCACCAA-AAAGATGCTTATCGTATTTCTTCTCACTATTCTTTTTGTCAAATCA  59

Query  61   TCGGTTCATTGTTCTGATAGCACTCTTGGTATTGGAATCAACCAAGATTGG-AAAAAATG  119
            |||||||||||||||||||||||||||||| ||||||| || ||| ||||| ||||||||
Sbjct  60   TCGGTTCATTGTTCTGATAGCACTCTTGGTGTTGGAATTAAGCAAAATTGGAAAAAAATG  119

Query  120  CTTCAGCCCAGACCCGTGTAAAAAAGCAGGGACGCAAGGCTGCATGGAGTTCTGTAGAAC  179
            ||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| 
Sbjct  120  CTTCAGCCCAGCCCCGTGTCAAAAAGCAGGGACGCAAGGCTGCATGGAGTTTTGTAGAAA  179

Query  180  TATAAGCTTTTTATTATTCGGTGAATGTACTTCTAAACCTGATCAATGTTGTTGTGTGAC  239
            ||||||||||||| |||| |||||||||||| ||||  ||||||||||||||||||||||
Sbjct  180  TATAAGCTTTTTACTATTTGGTGAATGTACTACTAATTCTGATCAATGTTGTTGTGTGAC  239



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8515982203


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5