BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G42242.1

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494805 jgi|Araly1|494805|fgenesh2_kg.8__621__AT5G42242.1          483    5e-136


> Ahg494805 jgi|Araly1|494805|fgenesh2_kg.8__621__AT5G42242.1
Length=375

 Score =  483 bits (261),  Expect = 5e-136
 Identities = 341/377 (90%), Gaps = 16/377 (4%)
 Strand=Plus/Plus

Query  1    ATGGAGAGGACAAGTACTTCACTTCTATTCC-TGCTTAGCTTACTTATCATATTTGCCTC  59
            ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
Sbjct  1    ATGGAGAGGACAAGTACTTCACTTCTATTCCTTG-TTAGCTTAGTTATCATATTTGCCAC  59

Query  60   AGCTGTGAATCAGATAAGAGCACAGACATGTGACGAGAACCTAAGCTCTTGTGAAAATTG  119
            || ||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||
Sbjct  60   AGTTGTGAATCAGATAAGAGCACAAACATGTGACGACAAACTAGGCTCTTGTGAAAATTG  119

Query  120  CGACCAAAGGTGCAAGGCCAAACACGGACCATCGTCCGTAAGCAAATGTAACGGTCCGGA  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CGACCAAAGGTGCAAGGCCAAACACGGACCATCGTCCGTAAGCAAATGTAACGGTCCGGA  179

Query  180  TGGGACGTGC--G-G-A--T--G--TGC-C-TCATTTAAACCAGCCAAACTGTGCATCGG  227
            ||||| ||||  | | |  |  |  ||  | |||||||||||||||||| ||||| ||||
Sbjct  180  TGGGATGTGCAAGTGCACCTACGAATGTGCGTCATTTAAACCAGCCAAAGTGTGCGTCGG  239

Query  228  TGCGACTGATATGTGCACTGATAAATGTCCTACA-AGTTGTTGTGATAGACAATGCGCTA  286
            ||||||||||||||||||||| |  |||||| || ||||||||||||||||||||||| |
Sbjct  240  TGCGACTGATATGTGCACTGACACTTGTCCT-CAGAGTTGTTGTGATAGACAATGCGCAA  298

Query  287  TAAAATATAAGAATGGAAAAGGGGGTTGTGTCGACTATGCTGGTTATAGGATGTGCATTT  346
            ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |
Sbjct  299  TAAAATATAAGAATGGACATGGGGGTTGTGTCAACTATGCTGGTTATAGGATGTGCATAT  358

Query  347  GCGAGTACACTTGCTAA  363
            |||||||| ||||||||
Sbjct  359  GCGAGTACTCTTGCTAA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12934744671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5