BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42250.1
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494804 jgi|Araly1|494804|fgenesh2_kg.8__620__AT5G42250.1 2124 0.0
> Ahg494804 jgi|Araly1|494804|fgenesh2_kg.8__620__AT5G42250.1
Length=1407
Score = 2124 bits (1150), Expect = 0.0
Identities = 1335/1423 (94%), Gaps = 18/1423 (1%)
Strand=Plus/Plus
Query 1 TATACAGAGAAGCTCTTACAAATTGTGACTCTCACCAGaaaaacacacaccaaacaaaac 60
|||| |||||||||||||||||||| |||||| | |||| | | | ||| |||||
Sbjct 1 TATAGAGAGAAGCTCTTACAAATTGGGACTCT---C---AAAA-A-A-A--AAA-AAAAC 48
Query 61 aaaacaaaaaacaGAGAGATGGAAAACGGAAACTCCTCCAGCGACAACAAATCTTCACAT 120
| | |||| || | ||||||||||||||||||||||||| |||||||||| ||||||| |
Sbjct 49 ACACCAAAGAA-A-AGAGATGGAAAACGGAAACTCCTCCGGCGACAACAAGTCTTCACGT 106
Query 121 AAACCGATCCGATGCAAAGCGGCGGTTAGTAGGAAGGCTGGAGAGCCGTTGGTGATGGAA 180
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 107 AAGCCGATCCGATGCAAAGCGGCGGTTAGTAGGAAGGCCGGAGAGCCGTTGGTGATGGAA 166
Query 181 GAAATCATGGTGGCGCCGCCGCAGCCTTTCGAGGTTCGGATTCGAATCATCTGCACCGCG 240
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 167 GAAATCATGGTGGCGCCGCCGCAGCCTTACGAGGTTCGGATCCGAATCATCTGCACCGCG 226
Query 241 TTATGTCACAGTGACGTCACTTTCTGGAAACTCCAAGTTCCTCCAGCCTGCTTTCCGAGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CTATGTCACAGTGACGTCACTTTCTGGAAACTCCAAGTTCCTCCAGCCTGCTTTCCGAGG 286
Query 301 ATACTAGGCCACGAGGCAATAGGCGTAGTGGAAAGTGTTGGTGAAAATGTGAAGGAAGTG 360
|| |||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 287 ATTCTAGGCCATGAGGCAATAGGTGTAGTAGAAAGTGTGGGTGAAAATGTGAAGGAAGTG 346
Query 361 GTAGAAGGAGACACCGTACTACCAACGTTCATGCCTGACTGTGGTGACTGTGTTGATTGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GTAGAAGGAGACACCGTACTACCAACGTTCATGCCTGACTGTGGTGACTGTGTTGATTGC 406
Query 421 AAATCTCACAAAAGCAACTTATGTAGCAAATTTCCTTTCAAGGTATCCCCTTGGATGCCA 480
||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||||||||||
Sbjct 407 AAATCTCACAAAAGCAATTTATGTAGTAAATTCCCCTTCAAAGTATCGCCTTGGATGCCA 466
Query 481 AGATACGATAATTCCAGCAGATTCACCGACCTCAATGGCGAAACTCTCTTTCATTTCTTG 540
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 467 AGATACGAAAATTCCAGCAGATTCACCGATCTCAATGGCCAAACTCTCTTTCATTTCTTG 526
Query 541 AACGTCTCCAGCTTCAGCGAATACACGGTTCTTGATGTCGCTAACGTTGTTAAGATTGAT 600
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 527 AACGTCTCCAGCTTCAGCGAATACACCGTTCTTGATGTCGCTAACATTGTTAAGATCGAT 586
Query 601 TCTTCGATTCCTCCTAGTCGTGCTTGCCTCCTAAGCTGCGGAGTCTCCACCGGTGTTGGT 660
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 587 TCTTCGATTCCTCCTAGTCGTGCTTGTCTCTTAAGCTGTGGAGTCTCCACCGGTGTTGGT 646
Query 661 GCTGCTTGGGAGACCGCCAAAGTTGAAAAAGGATCAACCGTTGTGATTTTCGGACTTGGT 720
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 647 GCTGCTTGGGAGACCGCCAAAGTTGAACAAGGATCGACCGTTGTGATTTTCGGACTTGGT 706
Query 721 TCTATCGGATTAGCGGTTGCAGAGGGTGCGAGACTTTGTGGTGCCTCTAGAATCATTGGT 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 707 TCTATCGGATTAGCGGTTGCAGAGGGTGCAAGACTTTGTGGTGCCTCTAGAATCATTGGT 766
Query 781 GTGGATATAAACCCTACCAAATTCCAAGTTGGCCAGAAATTTGGAGTTACCGAGTTTGTA 840
||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 767 GTGGATATAAACCCTGCCAAATTCCAAGTTGGCCAGAATTTTGGAATTACCGAGTTTGTA 826
Query 841 AACTCTATGACATGTGAGAAAAACCGTGTTAGCGAGGTGATCAATGAGATGACTGATGGG 900
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 827 AACTCTATGACATGCGAGAAAAAGAGTGTTAGCGAGGTGATCAATGAGATGACTGGTGGG 886
Query 901 GGAGCGGACTATTGCTTCGAATGTGTTGGAAGTAGTTCTTTGGTTCAAGAAGCTTATGCT 960
||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 887 GGAGCAGACTATTGTTTCGAGTGTGTTGGAAGTAGCTCTTTGGTTCAAGAAGCTTATGCT 946
Query 961 TGCTGTAGACAGGGATGGGGAAAGACAATAACTTTAGGGGTGGACAAGCCGGGTTCACAA 1020
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 947 TGTTGCAGACAGGGATGGGGAAAGACGATAACTTTAGGGGTGGACAAGCCGGGTTCACAA 1006
Query 1021 ATATGTTTAGATTCGTTTGATGTTCTTCACCATGGGAAGATTCTGATGGGTTCGTTGTTT 1080
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1007 ATATGTTTAGACTCCTTTGATGTTCTTCACCATGGGAAGATTCTGATGGGTTCATTGTTT 1066
Query 1081 GGAGGTTTAAAGGCTAAAACACACATTCCAATTCTTCTTAAACGCTACTTGAGCAATGAA 1140
|||||||| |||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 1067 GGAGGTTTGAAGGCTAAAACACACATTCCTCTTCTTCTAAAACGCTATTTGAGCAATGAG 1126
Query 1141 CTTGAATTGGATAAGTTTGTGACACATGAGATGAAATTCGAGGAGATCAACGACGCATTC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 CTTGAATTGGATAAGTTTGTGACACATGAGATGAAATTCGAGGAGATCAACGACGCATTC 1186
Query 1201 CAGCTACTTCTTGAAGGGAAATGCATCAGGTGTGTCTTATGGATGGGCTAAGTGAATTGA 1260
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1187 CAGCTACTTCTTGAAGGGAAATGCATCAGATGTGTCTTGTGGATGGGCTAAGTGAATTGA 1246
Query 1261 CTTATTTTATCTTTCCATCTTTTGCATCAATTTCATATGTTTCATGTTTAACTATTTTTA 1320
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1247 CTTATTTTATCTTTCCATCTTTTGCATCAATTTCATATGTTTCATGTAAAACTATTTTTA 1306
Query 1321 TTGGTTTGTAATCAAAACAAGCAAATGCCAAAGTGACA-GCAAAATAAAAAGTCAATGAA 1379
||||||||||||||||||||||||||||||||| | || ||||||||||| || |||| |
Sbjct 1307 TTGGTTTGTAATCAAAACAAGCAAATGCCAAAGCG-CAAGCAAAATAAAATGTTAATGGA 1365
Query 1380 TTGTAATGAAAATAAGCAAAGGACAAGAAATTGTTTT-TTCAT 1421
||| ||||||||||||||||||||||||| | |||| |||||
Sbjct 1366 CTGTTATGAAAATAAGCAAAGGACAAGAAAAT-TTTTATTCAT 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53135891775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5