BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42270.1
Length=2480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494803 jgi|Araly1|494803|fgenesh2_kg.8__619__AT5G42270.1 3465 0.0
Ahg923463 jgi|Araly1|923463|scaffold_104744.1 1718 0.0
> Ahg494803 jgi|Araly1|494803|fgenesh2_kg.8__619__AT5G42270.1
Length=2326
Score = 3465 bits (1876), Expect = 0.0
Identities = 2163/2297 (94%), Gaps = 37/2297 (2%)
Strand=Plus/Plus
Query 1 GTAGACGAACCTGAAGCAATCACTCAAACTCAAGACTTCTCTTTAATCCTCCTCCCAAAA 60
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1 GTAGACGAACCTCAAGCAATCACTCAAACTCATGACTTCTCTTTAATCCTCCTCCAAAAA 60
Query 61 A--TC----T-CAGAGAATCCTCCTTC-AATTCCAATTCAAAGCTCCTTCCTTTTTTCAC 112
| || | ||||||| |||||||| |||| |||||||||| ||||||| ||||||||
Sbjct 61 ATCTCAATTTGCAGAGAAACCTCCTTCAAATT-CAATTCAAAGATCCTTCC-TTTTTCAC 118
Query 113 ATCTCTCTTCTTCAAATTCAATCATCATAAAAATCGAATCTTTATTCTTCAGAGAGCTTC 172
| || |||||| ||||| ||| | ||| | || |||||||||||||||||
Sbjct 119 --CACT-TTCTTC---TTCAA-AATC-T---AAT----T-TTGATTCTTCAGAGAGCTTC 162
Query 173 AATGGCGACCACATCATCAAACCCATTACTACTTTCTTCAAATTTCCTCGGTTCTCAAAT 232
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 AATGGCGACCACATCTTCAAACCCATTACTACTTTCTTCAAATTTCCTCGGTTCTCAAAT 222
Query 233 TATAATCTCAGCTCCAACACCAAAAACCACCACAAAGTCTCTTCCTTTCTCAGTAATCTC 292
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 223 CATAATCTCAGCTCCAACACCAAAAACCACCACAAAGTCTCTTCCTTTCTCAGTCATCTC 282
Query 293 TCGAAAAAGATACCAAATTTCTCAATCGGAGAAGCTAATGAAATCGTTACCATCACAAGC 352
||||| ||||| | | ||||||||||||||||||||||| || |||||||||||
Sbjct 283 TCGAAGAAGAT-----A---C-CAATCGGAGAAGCTAATGAAATCTTTGCCATCACAAGC 333
Query 353 TGCGTTAGCAGCTCTGTTGTTCTCATCTTCATCTCCACAAGCTTTAGCAGTTAACGAACC 412
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 334 TGCGTTAGCGGCTCTGTTGTTCTCATCTTCGTCTCCACAAGCTTTAGCGGTTAACGAACC 393
Query 413 AGTTCAACCACCAGCACCAACCATTACTGCTGAAGCTCAATCACCAAATCTGTCGACTTT 472
||||| || ||||| || |||||||||| ||||||||| ||||||||||||||||| ||
Sbjct 394 GGTTCAGCCGCCAGCTCCGACCATTACTGTTGAAGCTCAGTCACCAAATCTGTCGACGTT 453
Query 473 TGGTCAAAACGTTTTGATGACAGCACCGAATCCACAAGCTCAATCATCAGATCTTCCTGA 532
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 454 TGGTCAGAACGTTTTGATGACAGCACCGAATCCACAAGCTCAATCATCGGATCTTCCTGA 513
Query 533 TGGAACACAATGGCGATACAGTGAGTTTCTAAATGCTGTGAAGAAAGGTAAAGTTGAGAG 592
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TGGAACACAGTGGCGATACAGTGAGTTTCTAAATGCTGTGAAGAAAGGTAAAGTTGAGAG 573
Query 593 AGTGAAGTTTAGTAAAGATGGTTCTGTTCTTCAGTTAACAGCTGTTGATAATCGTCGTGC 652
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 574 AGTGAAATTTAGTAAAGATGGTTCTGTTCTTCAGCTAACAGCTGTTGATAATCGTCGTGC 633
Query 653 TACTGTTATTGTTCCTAATGATCCTGATTTGATTGATATCTTGGCGATGAATGGTGTTGA 712
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 634 TACTGTTATTGTTCCTAATGATCCGGATTTGATTGATATCTTGGCGATGAATGGTGTCGA 693
Query 713 TATATCTGTTTCTGAAGGAGAAGGTGGAAATGGGTTGTTTGATTTCATTGGTAATTTGCT 772
|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 694 TATATCGGTTTCGGAAGGAGAATCTGGAAATGGGTTGTTTGATTTCATTGGTAATTTGCT 753
Query 773 TTTTCCTTTGTTGGCTTTTGGAGGGTTGTTTTATCTCTTTAGAGGAGGTCAAGGAGGTGC 832
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 754 TTTTCCTTTGTTGGCTTTTGGAGGGTTGTTTTATCTCTTTAGGGGAGGTCAGGGAGGTGC 813
Query 833 TGGTGGTCCTGGAGGTTTAGGAGGTCCTATGGATTTCGGAAGATCGAAATCGAAGTTTCA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TGGTGGTCCTGGAGGTTTAGGAGGTCCTATGGATTTCGGAAGATCGAAATCGAAGTTTCA 873
Query 893 GGAAGTGCCTGAAACCGGTGTGACATTTGGTGATGTTGCTGGAGCTGATCAAGCTAAGCT 952
||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 874 GGAAGTGCCGGAAACTGGGGTGACGTTTGGTGATGTTGCTGGAGCTGATCAAGCTAAGCT 933
Query 953 TGAGTTACAAGAAGTTGTTGATTTCTTGAAGAATCCTGATAAGTATACTGCGTTAGGTGC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 934 TGAGTTACAAGAAGTTGTTGATTTCTTGAAGAATCCTGATAAGTATACTGCTTTAGGTGC 993
Query 1013 TAAGATTCCTAAAGGTTGTTTGTTGGTTGGTCCACCGGGTACGGGGAAGACGCTTTTGGC 1072
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TAAGATTCCTAAAGGGTGTTTGTTGGTTGGTCCACCGGGTACGGGGAAGACGCTTTTGGC 1053
Query 1073 TAGAGCTGTGGCTGGAGAAGCTGGAGTGCCGTTCTTTTCGTGTGCTGCTTCGGAGTTTGT 1132
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TAGAGCTGTGGCTGGAGAAGCAGGAGTGCCGTTCTTTTCGTGTGCTGCTTCGGAGTTTGT 1113
Query 1133 TGAGCTTTTTGTTGGTGTGGGTGCTTCTAGAGTTAGGGATTTATTTGAGAAGGCGAAATC 1192
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1114 GGAGCTTTTTGTTGGTGTGGGTGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAATC 1173
Query 1193 GAAAGCTCCTTGTATTGTGTTTATTGATGAGATTGATGCTGTTGGTAGACAAAGAGGAGC 1252
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1174 GAAAGCTCCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGTAGGCAAAGAGGAGC 1233
Query 1253 TGGGATGGGTGGTGGAAATGATGAGAGGGAACAGACTATTAATCAGCTTTTGACTGAGAT 1312
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1234 TGGGATGGGTGGTGGAAATGATGAGAGAGAACAGACGATTAATCAGCTTTTGACTGAGAT 1293
Query 1313 GGATGGGTTTTCTGGTAACTCTGGTGTCATTGTGTTGGCTGCCACTAATAGACCGGATGT 1372
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 1294 GGATGGGTTTTCTGGTAATTCTGGTGTCATTGTGTTGGCTGCAACCAATAGACCGGATGT 1353
Query 1373 TCTTGACTCCGCGTTGCTGAGACCTGGTAGATTTGACCGGCAAGTCACAGTGGATAGGCC 1432
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TCTTGACTCCGCATTGCTGAGACCTGGTAGATTTGACCGGCAAGTCACAGTGGATAGGCC 1413
Query 1433 TGATGTAGCCGGAAGAGTTC-AGATCCTTAAGGTGCATTCTAGAGGAAAAGCTATTGGGA 1491
||||||||| ||||||| || ||||||| |||||||||||||||| || ||||||||||
Sbjct 1414 TGATGTAGCTGGAAGAG-TCAAGATCCTGCAGGTGCATTCTAGAGGGAAGGCTATTGGGA 1472
Query 1492 AGGATGTTGATTACGAAAAAGTTGCGAGGAGAACTCCGGGTTTCACTGGTGCTGATTTGC 1551
||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1473 AGGATGTGGATTATGAGAAAGTTGCGAGGAGAACTCCGGGTTTCACTGGTGCTGATTTAC 1532
Query 1552 AGAACCTGATGAATGAAGCTGCGATTCTTGCTGCTAGACGTGAGCTTAAGGAGATAAGCA 1611
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1533 AGAACCTGATGAATGAAGCTGCGATTCTTGCGGCTAGACGTGAGCTTAAGGAGATAAGCA 1592
Query 1612 AGGATGAAATATCTGATGCTCTTGAGAGGATCATTGCTGGACCTGAAAAGAAGAACGCTG 1671
||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1593 AGGATGAAATATCCGATGCTCTTGAGAGGATCATTGCTGGACCGGAGAAGAAGAATGCTG 1652
Query 1672 TTGTCTCTGAGGAGAAGAAAAGACTTGTTGCTTACCATGAGGCTGGGCATGCTTTAGTTG 1731
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1653 TTGTCTCAGAGGAGAAGAAGAGACTTGTTGCTTATCATGAGGCTGGGCATGCTTTAGTTG 1712
Query 1732 GTGCACTTATGCCGGAGTATGATCCAGTGGCCAAGATATCGATTATTCCACGTGGCCAAG 1791
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1713 GTGCACTTATGCCGGAGTACGATCCAGTGGCCAAGATATCGATTATTCCACGTGGTCAAG 1772
Query 1792 CTGGTGGGCTCACCTTTTTCGCTCCTAGCGAAGAGAGGCTAGAGTCCGGATTGTATAGCA 1851
|||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||
Sbjct 1773 CTGGTGGGCTCACCTTTTTCGCCCCTAGCGAAGAGAGACTTGAGTCTGGATTGTATAGCA 1832
Query 1852 GAAGCTACCTTGAGAACCAAATGGCTGTTGCACTTGGTGGAAGGGTTGCAGAAGAGGTGA 1911
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 GAAGCTACCTTGAGAATCAAATGGCTGTTGCACTTGGTGGAAGGGTTGCAGAAGAGGTGA 1892
Query 1912 TCTTTGGAGACGAGAATGTGACAACCGGAGCATCAAATGATTTCATGCAAGTGTCGCGGG 1971
||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| || |
Sbjct 1893 TCTTTGGTGACGAGAATGTAACAACCGGAGCATCAAACGATTTCATGCAGGTGTCACGAG 1952
Query 1972 TGGCTCGCCAAATGGTTGAGAGATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTG 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 TGGCTCGCCAAATGGTTGAGAGATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTG 2012
Query 2032 GTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTATGTCATCGCAGAAGGATTACTCGA 2091
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2013 GTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTATGTCATCACAGAAGGATTACTCAA 2072
Query 2092 TGGCAACAGCGGATGTGGTTGATGCGGAAGTGAGAGAGCTCGTTGAGAAGGCGTACGTGA 2151
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 2073 TGGCAACAGCGGATGTGGTTGATGCCGAAGTGAGAGAGCTGGTAGAGAAGGCGTACGTGA 2132
Query 2152 GAGCGAAAGAGATCATAACAACACAAATTGATATCCTACACAAGCTTGCACAGCTCCTTA 2211
| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 2133 GGGCGAAAGAGATCATAACAACACAAATTGATATCTTACACAAGCTTGCGCAGCTCCTAA 2192
Query 2212 TTGAGAAAGAAACTGTGGATGGAGAAGAGTTCATGAGTCTTTTCATTGACGGACAAGCCG 2271
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2193 TTGAGAAAGAAACTGTGGATGGAGAAGAGTTCATGAGCCTTTTCATTGACGGACAAGCTG 2252
Query 2272 AGTTATATGTTTCTTAA 2288
|||| ||||||||||||
Sbjct 2253 AGTTGTATGTTTCTTAA 2269
> Ahg923463 jgi|Araly1|923463|scaffold_104744.1
Length=2267
Score = 1718 bits (930), Expect = 0.0
Identities = 1516/1798 (84%), Gaps = 44/1798 (2%)
Strand=Plus/Plus
Query 514 AATCATCAGATCTTCCTGATGGAACACAATGGCGATACAGTGAGTTTCTAAATGCTGTGA 573
||||||| ||||||||||| ||| |||| ||||||||||| |||||||| || || ||||
Sbjct 412 AATCATCGGATCTTCCTGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCGGTGA 471
Query 574 AGAAAGGTAAAGTTGAGAGAGTGAAG-TTTAGTAAAGATGGTTCTGTTCTTCAG-TTAAC 631
|||||||||| || |||||||| || || || ||||| ||||||||| ||||| || ||
Sbjct 472 AGAAAGGTAAGGTGGAGAGAGT-TAGATTCAGCAAAGACGGTTCTGTTGTTCAGCTT-AC 529
Query 632 AGCTGTTGATAATCGTCGTG-CTACTGTTATTGTTCCTAATGATCCTGA-TTTGATTGAT 689
||||| || ||||| |||| || | || || || ||||| || ||||| || ||||||
Sbjct 530 TGCTGTCGACAATCGCCGTGCCT-CCGTCATCGTCCCTAACGACCCTGACCTT-ATTGAT 587
Query 690 ATCTTGGCGATGAATGGTGTTGATATATCTGTTTCTGAAGGAGAA---GGTGGAAATGGG 746
|||||||| ||||| || ||||||||||| ||||||||||||||| ||| ||||
Sbjct 588 ATCTTGGCTATGAACGGAGTTGATATATCGGTTTCTGAAGGAGAATCCTCTGGCAATGAC 647
Query 747 TTGTTTGA-TTTCATTGGTAATTTGCTTTTTCC-TTTGTTGGCTTTTGGAGGGTTGTT-T 803
||| || | | ||||||| || ||| |||| || || ||||| ||||| || | || |
Sbjct 648 TTG-TTCACTGTCATTGGAAACTTGATTTTCCCGCTT-TTGGCCTTTGGTGGACTCTTCT 705
Query 804 TATCTCTTT-AGAG-GAGGTCAAGGAGGTGCTGGTGGT---CCTGGAGGTTTAGGAGGTC 858
| || ||| || | ||| ||| || ||| |||||||| |||||||| || || ||||
Sbjct 706 T-GCT-TTTCAG-GCGAGCTCAGGGCGGTCCTGGTGGTGGCCCTGGAGGCTTGGGTGGTC 762
Query 859 CTATGGATTTCGGAAGATCGAAATCGAAGTTTCAGGAAGTGCCTGAAACCGGTGTGACAT 918
|||||||||||||| | || ||||| ||||| |||||||||||||| || |||||| |||
Sbjct 763 CTATGGATTTCGGACGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGTGTCAT 822
Query 919 TTGGTGATGTTGCTGGAGCTGATCAAGCTAAGCTT-GAGTTACAAGAAGTTGTTGATTTC 977
| | ||||||||||| ||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 823 TCGCAGATGTTGCTGGTGCTGATCAAGCTAAG-TTGGAGTTACAGGAAGTTGTGGATTTC 881
Query 978 TTGAAGAATCCTGATAAGTATACTGCGTTAGGTGCTAAGATTCCTAAAGGTTGTTTG-TT 1036
|||||||||||||||||||| || || || |||||||||||||||||||| |||||| ||
Sbjct 882 TTGAAGAATCCTGATAAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTT 941
Query 1037 GGTTGGTCCACCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCTGG 1096
||||| || || |||||||| ||||| || ||||||| || |||||||| ||||| ||
Sbjct 942 -GTTGGACCGCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCAGG 1000
Query 1097 AGTGCCGTTCTTTTCGTGTGCTGCTTCGGAGTTTGTTGAGCTTTTTGTTGGTGTGGGTGC 1156
||| ||||||||||| || || || ||||||||||| ||||||||||| |||||||||||
Sbjct 1001 AGTACCGTTCTTTTCTTGCGCAGCCTCGGAGTTTGTGGAGCTTTTTGTGGGTGTGGGTGC 1060
Query 1157 TTCTAGAGTTAGGGATTTATTTGAGAAGGCGAAATCGAAAGCTCCTTGTATTGTGTTTAT 1216
||||||||||||||||| || |||||||| || |||||||| ||||||||||| || ||
Sbjct 1061 ATCTAGAGTTAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGCACCTTGTATTGTATTCAT 1120
Query 1217 TGATGAGATTGATGCTGTTGGTAGACAAAGAGGAGCTGGGATGGGTGGTGGAAATGATGA 1276
|||||||||||||||||| || || || ||||||||||||||||| || |||||||||||
Sbjct 1121 TGATGAGATTGATGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGA 1180
Query 1277 GAGGGAACAGACTATTAATCAGCTT-TTGACTGAGATGGATGGGTTTTCTGGTAACTCTG 1335
||| |||||||||||||||||| || ||||| ||||||||||| |||||||| |||||||
Sbjct 1181 GAGAGAACAGACTATTAATCAG-TTGTTGACGGAGATGGATGGATTTTCTGGCAACTCTG 1239
Query 1336 GTGTCATTGTGTTGGCTGCCACTAATAGACCGGATGTTCTTGACTCCGCGTTGCTGAGAC 1395
|||| || || ||||| || |||||||| ||||| |||||||| || || || |||| |
Sbjct 1240 GTGTGATAGTTTTGGCAGCTACTAATAGGCCGGACGTTCTTGATTCGGCACTGTTGAGGC 1299
Query 1396 CTGGTAGATTTGACCGGCAAGTCACAGTGGATAGGCCTGATGTAGCCGGAAGAGTTC-AG 1454
|||| || ||||| || || || || ||||||||||||||||| || || |||| || ||
Sbjct 1300 CTGGAAGGTTTGATCGACAGGTTACGGTGGATAGGCCTGATGTGGCTGGCAGAG-TCAAG 1358
Query 1455 ATCCTTAAGGTGCATTCTAGAGGAAAAGCTA-TTGGGAAGGATGTTGA-TTACGAAAAAG 1512
|| || |||| |||||||| || || || | | || || ||||| || || || || |
Sbjct 1359 ATTCTCCAGGTTCATTCTAGGGGGAAGGC-ACTCGGTAAAGATGTGGACTT-TGACAAGG 1416
Query 1513 TTGCGAGGAGAACTCCGGGTTTCACTGGTGCTGATTTGCAGAACCTGATGAATGAAGCTG 1572
|||||||||| || || |||||||| |||||||| || || ||||||||||||||||| |
Sbjct 1417 TTGCGAGGAGGACCCCCGGTTTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGG 1476
Query 1573 CGATTCTTGCTGCTAGACGTGAGCTTAAGGAGATAAGCAAGGATGAAATATCTGATGCTC 1632
|||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1477 CGATTCTTGCAGCCAGGCGTGAGCTTAAGGAGATAAGCAAGGATGAAATCTCTGATGCTC 1536
Query 1633 TTGAGAGGATCATTGCTGGACCTGAAAAGAAGAACGCTGTTGTCTCTGAGGAGAAGAAAA 1692
||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||| |
Sbjct 1537 TTGAGAGGATCATTGCTGGACCTGAGAAGAAGAATGCAGTTGTCTCTGATGAGAAGAAGA 1596
Query 1693 GACTTGTTGCTTACCATGAGGCTGGGCATGCTTTAGTTGGTGCACTTATGCCGGAGTATG 1752
|||||||||| |||||||||||||| |||||| |||| ||||| ||||||||||| ||||
Sbjct 1597 GACTTGTTGCATACCATGAGGCTGGCCATGCTCTAGTGGGTGCTCTTATGCCGGAATATG 1656
Query 1753 ATCCAGTGGCCAAGATATCGATTATTCCACGTGGCCAAGCTGGTGGGCTCACCTTTTTCG 1812
|||| || || ||||| || || ||||| ||||||||||||||||||||||| ||||| |
Sbjct 1657 ATCCGGTTGCAAAGATTTCCATCATTCCTCGTGGCCAAGCTGGTGGGCTCACTTTTTTTG 1716
Query 1813 CTCCTAGCGAAGAGAGGCTAGAGTCCGGATTGTATAGCAGAAGCTACCTTGAGAACCAAA 1872
|||| |||||||| || || ||||| |||||||| ||||| |||||||| ||||| ||||
Sbjct 1717 CTCCAAGCGAAGAAAGACTTGAGTCTGGATTGTACAGCAGGAGCTACCTCGAGAATCAAA 1776
Query 1873 TGGCTGTTGCACTTGGTGGAAGGGTTGCAGAAGAGGTGATCTTTGGAGACGAGAATGTGA 1932
|||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1777 TGGCTGTTGCACTTGGCGGAAGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGA 1836
Query 1933 CAACCGGAGCATCAAATGATTTCATGCAAGTGTCGCGGGTGGCTCGCCAAATGGTTGAGA 1992
| |||||||||||||||||||||||||| ||||| || ||||| || |||||| ||||||
Sbjct 1837 CGACCGGAGCATCAAATGATTTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGA 1896
Query 1993 GATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTGGTGGAGCAGGAGGAAA-CCCT 2051
|||| || |||||||||||||||||||||||||| |||||||| | || ||||| ||||
Sbjct 1897 GATTTGGCTTCAGCAAAAAGATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCT 1956
Query 2052 TTCTTGGGTCAA-AGTATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGT 2110
|| | ||||||| | |||||||| ||||| |||||||| |||||||| || ||| | ||
Sbjct 1957 TTAT-GGGTCAACAA-ATGTCATCACAGAAAGATTACTCAATGGCAACTGCAGATATTGT 2014
Query 2111 TGATGCGGAAGTGAGAGAGCTCGTTGAGAAGGCGTACGTGAGAGCGAAAG-AGATCATAA 2169
||||| || ||| ||||| | ||||||||||| ||| |||||| || | |||||||||
Sbjct 2015 AGATGCTGAGGTGCGAGAGTTAGTTGAGAAGGCATACAAGAGAGC-AACGGAGATCATAA 2073
Query 2170 CAACACAAATTGATATCCTACACAAGCTTGCACAGCTCCTTATTGAGAAAGAAACTGTGG 2229
|||| || |||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 2074 CAACTCATATTGATATCCTACACAAGCTTGCACAGCTCCTCATCGAGAAAGAAACTGTTG 2133
Query 2230 ATGGAGAAGAGTTCATGAGTCT-TTTCATTGACGGACAAGCCGAGTTATATGTTTCTT 2286
| || |||||||||||||| || ||| |||||||| ||||| ||||| ||| | ||||
Sbjct 2134 ACGGCGAAGAGTTCATGAGCCTCTTT-ATTGACGGCCAAGCTGAGTTGTATATATCTT 2190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473461230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5