BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42320.1 Length=1352 Score E Sequences producing significant alignments: (Bits) Value Ahg331168 jgi|Araly1|331168|fgenesh1_pm.C_scaffold_8000511 1842 0.0 > Ahg331168 jgi|Araly1|331168|fgenesh1_pm.C_scaffold_8000511 Length=1377 Score = 1842 bits (997), Expect = 0.0 Identities = 1101/1153 (95%), Gaps = 0/1153 (0%) Strand=Plus/Plus Query 38 CAGTGATGATTTAATGGAGCAGATACATTCTTTGGTACATCGACATCCAGATAAGCTCTC 97 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 CAGTGATGATTTAATGGAGCAGATACATTCTTTGGTACATCGACATCCAGATAAGCTCTC 284 Query 98 GATTGAGTTGATTAAATCGGGAAACAAAGGCTACAATGCAGAGGTCAATGTGGTAACTTA 157 ||||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 285 GATTGAGATGATTAAATCGGGAAACAAAGGCTACAATGCAGAGGTTAACGTGGTTACTTA 344 Query 158 TTGTCGCGGTGGTAAAGAGAGTGATGACAGATCAAACTTTAGGATTCTTCTTACTTTTGG 217 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 345 TTGTCGCGGTGGTAGAGAGAGTGATGACAGATCAAACTTTAGGATCCTTCTTACTTTTGG 404 Query 218 TCAGCATGGGAGAGAGCTTATCACCTCTGAACTTGCTTTTCGGATTTTGTCAATTTTGAG 277 |||||||||||||||||||||||||||||||||||| |||||||| || |||||||| || Sbjct 405 TCAGCATGGGAGAGAGCTTATCACCTCTGAACTTGCCTTTCGGATATTATCAATTTTAAG 464 Query 278 CGAAGAACAGTTCTTACCAAATAAAAACGGAGGAATCCTGAAAAACACATTAGACAAACT 337 ||||||||||||| ||||||| |||||||||| | |||||| |||||||||||||| || Sbjct 465 CGAAGAACAGTTCCTACCAAAGAAAAACGGAGCAGCCCTGAACAACACATTAGACAAGCT 524 Query 338 AGTCATAAAAATGGTTCCTATAGAAAACCCGAATGGTCGCAAACGTGTTGAATCTGGAGA 397 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 525 AGTCATAAAAATGGTTCCTATAGAAAACCCAAATGGTCGCAAACGTGTTGAATCTGGAGA 584 Query 398 TCTTTGTGAACGAAGAAATGGAAGAGGAGTTGACCTGAACCGAAATTGGGGTGTTGACTG 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 TCTTTGTGAACGAAGAAATGGAAGAGGAGTTGACCTGAACCGAAATTGGGGTGTTGACTG 644 Query 458 GGGCAAGAAAGAAAAGGATTATGATCCATCTGAAGAGAATCCAGGAACTGCTCCGTTTAG 517 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 645 GGGCAAGAAAGAAAAGGATTATGATCCATATGAAGAGAATCCAGGAACTGCTCCGTTTAG 704 Query 518 TGAGCCCGAAACTCAAATAATGCGGAAGCTAGCCATATCATTTGATCCTCACATATGGAT 577 |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 705 TGAGCCTGAAACTCAAATTATGCGGAAGCTAGCTATATCATTTGATCCTCACATATGGAT 764 Query 578 AAATGTGCATTCTGGAATGGAGGCTTTATTTATGCCGTATGACCACAAAAACATAACCCC 637 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 AAACGTGCATTCTGGAATGGAGGCTTTATTTATGCCGTATGACCACAAAAACATAACCCC 824 Query 638 AGAGGGATTACCTTCACAGAAAATGAGGACCTTACTTGAAAAACTTAACAAATTTCATTG 697 ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 825 AGAGGGATTGCCTTCGCAGAAAATGAGGACCTTACTTGAAAAACTTAATAAATTTCATTG 884 Query 698 TCACGACCGCTGCATGATTGGATCTGGCGGCGGCTCTGTTGGGTATTTGGCACATGGTAC 757 |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 885 TCACAACCGCTGCATGATTGGATCTGGCGGCGGCTCTGTTGGGTACCTGGCACATGGTAC 944 Query 758 AGCTACAGATTATATCTATGATGTTGTAAAGGCACCCATGGCATTCACCTTTGAGATCTA 817 ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| || Sbjct 945 AGCTACAGACTATATCTATGATGTTGTAAAGGCACCAATGGCATTTACCTTTGAGATTTA 1004 Query 818 TGGGGACAACCAAACTGCTTCAAGAGATTGCTTTAAAATGTTCAACCCTGTTGATCTACC 877 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 TGGGGACAACCAAACTGCTTCAAGAGATTGCTTTAAAATGTTCAACCCTGTTGATCTACC 1064 Query 878 CAATTTCAAGAGAGTTCTTAATGACTGGTCTGCTGCATTCTTCACGATTTTCCAACTGGG 937 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1065 CAATTTCAAGAGAGTTCTGAATGACTGGTCTGCTGCATTCTTCACGATTTTCCAACTGGG 1124 Query 938 ACCGCTCCACTTAGACGGAAACACTTCCAAAGCTGCAGACAAATGGGTGTCTATAGACGA 997 ||||||||| ||||||||||||| |||||| | |||||| ||||||||||| |||||||| Sbjct 1125 ACCGCTCCAGTTAGACGGAAACAGTTCCAAGGTTGCAGAGAAATGGGTGTCGATAGACGA 1184 Query 998 GTATTTGGATGGCTACTTGGTGGAAAGGAAGAACAGATATGGGAAAAACATGGAAGTGAT 1057 |||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1185 GTATCTGGACGGCTACTTGGTGGAAAGGAAGAATAGATATGGGAAGAACATGGAAGTGAT 1244 Query 1058 CGATGTCGGAATGCAAGAGATAAAAACTTACTTCAGGCTCTTCTTGTTGTCTTCAGTACT 1117 |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1245 TGATGTCGGAATGCAGGAGATAAAAACTTATTTCAGGCTCTTCTTGTTGTCCTCAGTACT 1304 Query 1118 TCTGATGTTCATGTTCTGTTCCAGGATAGCGAAGAGCAAGTATAGTAGAAACTCCATGCC 1177 |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 1305 TCTGATGTTCATGTTCTGTTCCAGGATAGCCAAAAGCAAGTATAGTAGAAACTCCATACC 1364 Query 1178 TGTCTTGCCATGA 1190 |||| |||||||| Sbjct 1365 TGTCATGCCATGA 1377 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50589110859 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5