BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42320.1
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331168 jgi|Araly1|331168|fgenesh1_pm.C_scaffold_8000511 1842 0.0
> Ahg331168 jgi|Araly1|331168|fgenesh1_pm.C_scaffold_8000511
Length=1377
Score = 1842 bits (997), Expect = 0.0
Identities = 1101/1153 (95%), Gaps = 0/1153 (0%)
Strand=Plus/Plus
Query 38 CAGTGATGATTTAATGGAGCAGATACATTCTTTGGTACATCGACATCCAGATAAGCTCTC 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CAGTGATGATTTAATGGAGCAGATACATTCTTTGGTACATCGACATCCAGATAAGCTCTC 284
Query 98 GATTGAGTTGATTAAATCGGGAAACAAAGGCTACAATGCAGAGGTCAATGTGGTAACTTA 157
||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 285 GATTGAGATGATTAAATCGGGAAACAAAGGCTACAATGCAGAGGTTAACGTGGTTACTTA 344
Query 158 TTGTCGCGGTGGTAAAGAGAGTGATGACAGATCAAACTTTAGGATTCTTCTTACTTTTGG 217
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 345 TTGTCGCGGTGGTAGAGAGAGTGATGACAGATCAAACTTTAGGATCCTTCTTACTTTTGG 404
Query 218 TCAGCATGGGAGAGAGCTTATCACCTCTGAACTTGCTTTTCGGATTTTGTCAATTTTGAG 277
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 405 TCAGCATGGGAGAGAGCTTATCACCTCTGAACTTGCCTTTCGGATATTATCAATTTTAAG 464
Query 278 CGAAGAACAGTTCTTACCAAATAAAAACGGAGGAATCCTGAAAAACACATTAGACAAACT 337
||||||||||||| ||||||| |||||||||| | |||||| |||||||||||||| ||
Sbjct 465 CGAAGAACAGTTCCTACCAAAGAAAAACGGAGCAGCCCTGAACAACACATTAGACAAGCT 524
Query 338 AGTCATAAAAATGGTTCCTATAGAAAACCCGAATGGTCGCAAACGTGTTGAATCTGGAGA 397
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 525 AGTCATAAAAATGGTTCCTATAGAAAACCCAAATGGTCGCAAACGTGTTGAATCTGGAGA 584
Query 398 TCTTTGTGAACGAAGAAATGGAAGAGGAGTTGACCTGAACCGAAATTGGGGTGTTGACTG 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TCTTTGTGAACGAAGAAATGGAAGAGGAGTTGACCTGAACCGAAATTGGGGTGTTGACTG 644
Query 458 GGGCAAGAAAGAAAAGGATTATGATCCATCTGAAGAGAATCCAGGAACTGCTCCGTTTAG 517
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 645 GGGCAAGAAAGAAAAGGATTATGATCCATATGAAGAGAATCCAGGAACTGCTCCGTTTAG 704
Query 518 TGAGCCCGAAACTCAAATAATGCGGAAGCTAGCCATATCATTTGATCCTCACATATGGAT 577
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 705 TGAGCCTGAAACTCAAATTATGCGGAAGCTAGCTATATCATTTGATCCTCACATATGGAT 764
Query 578 AAATGTGCATTCTGGAATGGAGGCTTTATTTATGCCGTATGACCACAAAAACATAACCCC 637
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AAACGTGCATTCTGGAATGGAGGCTTTATTTATGCCGTATGACCACAAAAACATAACCCC 824
Query 638 AGAGGGATTACCTTCACAGAAAATGAGGACCTTACTTGAAAAACTTAACAAATTTCATTG 697
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 825 AGAGGGATTGCCTTCGCAGAAAATGAGGACCTTACTTGAAAAACTTAATAAATTTCATTG 884
Query 698 TCACGACCGCTGCATGATTGGATCTGGCGGCGGCTCTGTTGGGTATTTGGCACATGGTAC 757
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 885 TCACAACCGCTGCATGATTGGATCTGGCGGCGGCTCTGTTGGGTACCTGGCACATGGTAC 944
Query 758 AGCTACAGATTATATCTATGATGTTGTAAAGGCACCCATGGCATTCACCTTTGAGATCTA 817
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 945 AGCTACAGACTATATCTATGATGTTGTAAAGGCACCAATGGCATTTACCTTTGAGATTTA 1004
Query 818 TGGGGACAACCAAACTGCTTCAAGAGATTGCTTTAAAATGTTCAACCCTGTTGATCTACC 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TGGGGACAACCAAACTGCTTCAAGAGATTGCTTTAAAATGTTCAACCCTGTTGATCTACC 1064
Query 878 CAATTTCAAGAGAGTTCTTAATGACTGGTCTGCTGCATTCTTCACGATTTTCCAACTGGG 937
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 CAATTTCAAGAGAGTTCTGAATGACTGGTCTGCTGCATTCTTCACGATTTTCCAACTGGG 1124
Query 938 ACCGCTCCACTTAGACGGAAACACTTCCAAAGCTGCAGACAAATGGGTGTCTATAGACGA 997
||||||||| ||||||||||||| |||||| | |||||| ||||||||||| ||||||||
Sbjct 1125 ACCGCTCCAGTTAGACGGAAACAGTTCCAAGGTTGCAGAGAAATGGGTGTCGATAGACGA 1184
Query 998 GTATTTGGATGGCTACTTGGTGGAAAGGAAGAACAGATATGGGAAAAACATGGAAGTGAT 1057
|||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1185 GTATCTGGACGGCTACTTGGTGGAAAGGAAGAATAGATATGGGAAGAACATGGAAGTGAT 1244
Query 1058 CGATGTCGGAATGCAAGAGATAAAAACTTACTTCAGGCTCTTCTTGTTGTCTTCAGTACT 1117
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1245 TGATGTCGGAATGCAGGAGATAAAAACTTATTTCAGGCTCTTCTTGTTGTCCTCAGTACT 1304
Query 1118 TCTGATGTTCATGTTCTGTTCCAGGATAGCGAAGAGCAAGTATAGTAGAAACTCCATGCC 1177
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1305 TCTGATGTTCATGTTCTGTTCCAGGATAGCCAAAAGCAAGTATAGTAGAAACTCCATACC 1364
Query 1178 TGTCTTGCCATGA 1190
|||| ||||||||
Sbjct 1365 TGTCATGCCATGA 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50589110859
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5