BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42325.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483368 jgi|Araly1|483368|fgenesh2_kg.4__2428__AT5G42325.1 817 0.0
> Ahg483368 jgi|Araly1|483368|fgenesh2_kg.4__2428__AT5G42325.1
Length=678
Score = 817 bits (442), Expect = 0.0
Identities = 615/694 (89%), Gaps = 30/694 (4%)
Strand=Plus/Plus
Query 12 AGAGTTCTTGGAGTTGTTCGAGGCAGCACTTAGAGCGGCTAAGTCTGTGAAAGGTGCTGA 71
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |
Sbjct 12 AGAGTTCTTGGAGTTGTTCGATGCAGCACTTCGAGCGGCTAAGTCTGTGAAAGGTGTTAA 71
Query 72 GAGTTCTCCAGAGGTATTGAGGTTTGTCGATGCTATGAATCGTTTGAAGGAAGCACCTAA 131
|| |||||||||||||| ||||||||| || || |||||||||||||||||||| ||| |
Sbjct 72 GAATTCTCCAGAGGTATCGAGGTTTGTTGACGCCATGAATCGTTTGAAGGAAGCTCCTGA 131
Query 132 GTCACTTGTTTGTGACGTGGTCTGCAAAACCTCCATGGGGAAGGGTTTGGGATTCTTCAT 191
|||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 132 GTCACTTGCTTGTGACGTGGTCTGCACAACCTCCATGGGGAAGGGTTTGAGATTCTTCAA 191
Query 192 TGATCACAAAAACCCTAAAATTCGATCGGAAGGAAGGATTCTTCGGGATCTTTGGATGAA 251
||||||||||||||| |||||||||| ||||||| | ||||| |||||||||||| ||
Sbjct 192 AGATCACAAAAACCCTCAAATTCGATCAGAAGGAAAGCTTCTTTGGGATCTTTGGACAAA 251
Query 252 GATTCATT-ATGCTTCAGGTAGAGAAAAGAGTCGTGATAGAGAAACTCCGGTGAAGATTC 310
|||| ||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 252 GATT-ATTCACGCTTCAGGTAGAGAAAAGAGCCGTGATAGAGATACTCCGGTGAAGATTC 310
Query 311 CGACGCATTCAACGATGAAGAAGACTGGAGATTCAAAACGAGATAAAGTGCATGAGATTC 370
||||| ||||||| || |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 311 CGACGGATTCAACAATAAAGAAGACTGGAGATTCAAAACGAGACAAAGTGCGTGAGATTC 370
Query 371 TTCAATCATCTTTGGCTAAAGTCGCTACTGAGGTTGTTGACACGGAGATGAAGAGACGAG 430
| ||| |||||||||||||||| |||||||||||||||||||| |||||||||| |||||
Sbjct 371 TACAAACATCTTTGGCTAAAGTTGCTACTGAGGTTGTTGACACAGAGATGAAGACACGAG 430
Query 431 TCATGACTGTTTGTGATCCTTGGGTTGTGGCTGTATCTGTGGAATCTGCAATGTCGATTC 490
|| |||| |||||||||||||||||||||| |||| ||||||||||| | |
Sbjct 431 TC---ACTGCTTGTGATCCTTGGGTTGTGGCTATATCAGTGGAATCTGC-A-----A--- 478
Query 491 TGTTCAACATGGGAGATAGTAACAATCCAGATTTGAGGAGGAAAGTGTTAATTGGTGAGA 550
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGTT-----T--GAG--AGTAACAATCCAGATTTGAGGAGGAAAGTGTTAATTGGTGAGA 529
Query 551 TCAGTGGGGAGAGATTAGTGA-AGATGGAGAAAGACGAGATGGGGAGTGAGAAGATTCAG 609
||| ||| |||||| | |||| | ||||||| | | ||||||||||||||||||||||||
Sbjct 530 TCAATGGAGAGAGACTCGTGACA-ATGGAGAGACAAGAGATGGGGAGTGAGAAGATTCAG 588
Query 610 AAGGAGGTTCAAAGGATTAAAGAGAGA-GCAAGATTTAAGGAAGAGAGTCGCATGAAGAT 668
||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 589 AAGGAAGTTCAAAGGATTAAAGAGA-ATGCAAGATTTAAGGAAGAGAGTCGAATGAAGAT 647
Query 669 GCTTCTTGCATCAGCAGATATGATCATGACTTAG 702
||||| | ||||||||||||||||||||||||
Sbjct 648 GCTTCA-G--TCAGCAGATATGATCATGACTTAG 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5